Strain Fitness in Escherichia coli BW25113 around b0740

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttolA and tolB are separated by 132 nucleotidestolB and pal are separated by 34 nucleotidespal and ybgF are separated by 9 nucleotides b0739: tolA - cell envelope integrity inner membrane protein TolA (NCBI), at 775,565 to 776,830 tolA b0740: tolB - translocation protein TolB precursor (NCBI), at 776,963 to 778,255 tolB b0741: pal - peptidoglycan-associated outer membrane lipoprotein (NCBI), at 778,290 to 778,811 pal b0742: ybgF - hypothetical protein (NCBI), at 778,821 to 779,612 ybgF Position (kb) 776 777 778 779Strain fitness (log2 ratio) -2 -1 0 1 2at 776.098 kb on - strand, within tolAat 776.124 kb on + strand, within tolAat 776.146 kb on + strand, within tolAat 776.265 kb on - strand, within tolAat 776.265 kb on - strand, within tolAat 776.464 kb on + strand, within tolAat 776.475 kb on - strand, within tolAat 776.601 kb on - strand, within tolAat 776.625 kb on - strand, within tolAat 776.640 kb on - strand, within tolAat 776.640 kb on - strand, within tolAat 776.657 kb on - strand, within tolAat 776.713 kb on - strandat 776.725 kb on + strandat 776.779 kb on - strandat 776.943 kb on + strandat 776.968 kb on - strandat 776.994 kb on + strandat 776.994 kb on + strandat 777.012 kb on + strandat 777.014 kb on + strandat 777.135 kb on + strand, within tolBat 777.146 kb on + strand, within tolBat 777.260 kb on + strand, within tolBat 777.278 kb on - strand, within tolBat 777.299 kb on - strand, within tolBat 777.303 kb on - strand, within tolBat 777.393 kb on - strand, within tolBat 777.398 kb on - strand, within tolBat 777.444 kb on - strand, within tolBat 777.513 kb on + strand, within tolBat 777.522 kb on - strand, within tolBat 777.602 kb on - strand, within tolBat 777.602 kb on - strand, within tolBat 777.692 kb on + strand, within tolBat 777.700 kb on - strand, within tolBat 777.720 kb on - strand, within tolBat 777.770 kb on - strand, within tolBat 777.792 kb on - strand, within tolBat 777.839 kb on - strand, within tolBat 777.952 kb on - strand, within tolBat 777.954 kb on - strand, within tolBat 777.987 kb on - strand, within tolBat 778.009 kb on - strand, within tolBat 778.014 kb on - strand, within tolBat 778.020 kb on - strand, within tolBat 778.070 kb on + strand, within tolBat 778.127 kb on - strandat 778.150 kb on - strandat 778.150 kb on - strandat 778.212 kb on + strandat 778.212 kb on + strandat 778.212 kb on + strandat 778.220 kb on - strandat 778.222 kb on + strandat 778.316 kb on + strandat 778.316 kb on + strandat 778.382 kb on + strand, within palat 778.395 kb on - strand, within palat 778.420 kb on - strand, within palat 778.422 kb on - strand, within palat 778.455 kb on + strand, within palat 778.455 kb on + strand, within palat 778.560 kb on + strand, within palat 778.568 kb on - strand, within palat 778.596 kb on - strand, within palat 778.600 kb on + strand, within palat 778.604 kb on - strand, within palat 778.656 kb on - strand, within palat 778.656 kb on - strandat 778.661 kb on - strand, within palat 778.713 kb on - strand, within palat 778.752 kb on + strand, within palat 778.752 kb on + strand, within palat 778.752 kb on + strand, within palat 778.780 kb on + strandat 778.780 kb on + strandat 778.805 kb on - strandat 778.851 kb on + strandat 778.856 kb on + strandat 778.864 kb on - strandat 778.870 kb on + strandat 778.932 kb on + strand, within ybgFat 778.940 kb on - strand, within ybgFat 778.940 kb on - strand, within ybgFat 778.940 kb on - strand, within ybgFat 778.940 kb on - strand, within ybgFat 779.036 kb on + strand, within ybgFat 779.145 kb on + strand, within ybgFat 779.145 kb on + strand, within ybgFat 779.158 kb on - strand, within ybgFat 779.196 kb on + strand, within ybgFat 779.201 kb on + strand, within ybgFat 779.201 kb on + strand, within ybgFat 779.204 kb on - strand, within ybgF

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
776,098 - tolA b0739 0.42 -0.8
776,124 + tolA b0739 0.44 -0.8
776,146 + tolA b0739 0.46 -0.1
776,265 - tolA b0739 0.55 -1.1
776,265 - tolA b0739 0.55 -0.1
776,464 + tolA b0739 0.71 -0.0
776,475 - tolA b0739 0.72 -1.5
776,601 - tolA b0739 0.82 +0.5
776,625 - tolA b0739 0.84 -0.8
776,640 - tolA b0739 0.85 -1.8
776,640 - tolA b0739 0.85 -2.0
776,657 - tolA b0739 0.86 -0.1
776,713 - +0.7
776,725 + -0.1
776,779 - -0.4
776,943 + +0.3
776,968 - -0.9
776,994 + -1.5
776,994 + -0.8
777,012 + -1.6
777,014 + -1.7
777,135 + tolB b0740 0.13 +1.5
777,146 + tolB b0740 0.14 -2.1
777,260 + tolB b0740 0.23 -0.9
777,278 - tolB b0740 0.24 -1.0
777,299 - tolB b0740 0.26 -0.4
777,303 - tolB b0740 0.26 +0.8
777,393 - tolB b0740 0.33 -1.4
777,398 - tolB b0740 0.34 -0.8
777,444 - tolB b0740 0.37 -0.8
777,513 + tolB b0740 0.43 -2.0
777,522 - tolB b0740 0.43 -1.7
777,602 - tolB b0740 0.49 +0.9
777,602 - tolB b0740 0.49 -0.2
777,692 + tolB b0740 0.56 -0.6
777,700 - tolB b0740 0.57 -0.1
777,720 - tolB b0740 0.59 -1.8
777,770 - tolB b0740 0.62 -1.4
777,792 - tolB b0740 0.64 -2.0
777,839 - tolB b0740 0.68 -1.1
777,952 - tolB b0740 0.76 +1.9
777,954 - tolB b0740 0.77 -1.3
777,987 - tolB b0740 0.79 -1.0
778,009 - tolB b0740 0.81 +0.0
778,014 - tolB b0740 0.81 -1.4
778,020 - tolB b0740 0.82 -1.2
778,070 + tolB b0740 0.86 -0.5
778,127 - -1.7
778,150 - -1.8
778,150 - -1.0
778,212 + +1.5
778,212 + -0.5
778,212 + -0.1
778,220 - -0.7
778,222 + -1.9
778,316 + -1.5
778,316 + +0.1
778,382 + pal b0741 0.18 -0.5
778,395 - pal b0741 0.20 +1.5
778,420 - pal b0741 0.25 -1.3
778,422 - pal b0741 0.25 -0.4
778,455 + pal b0741 0.32 +0.5
778,455 + pal b0741 0.32 -1.0
778,560 + pal b0741 0.52 -0.9
778,568 - pal b0741 0.53 -0.1
778,596 - pal b0741 0.59 -0.8
778,600 + pal b0741 0.59 -1.1
778,604 - pal b0741 0.60 +0.1
778,656 - pal b0741 0.70 -0.3
778,656 - +0.5
778,661 - pal b0741 0.71 -0.3
778,713 - pal b0741 0.81 -2.3
778,752 + pal b0741 0.89 -1.8
778,752 + pal b0741 0.89 -1.3
778,752 + pal b0741 0.89 -1.1
778,780 + -1.1
778,780 + +0.6
778,805 - -0.7
778,851 + +0.4
778,856 + +0.3
778,864 - -0.7
778,870 + -0.1
778,932 + ybgF b0742 0.14 +0.1
778,940 - ybgF b0742 0.15 -1.0
778,940 - ybgF b0742 0.15 +0.8
778,940 - ybgF b0742 0.15 +1.5
778,940 - ybgF b0742 0.15 +0.3
779,036 + ybgF b0742 0.27 -2.0
779,145 + ybgF b0742 0.41 -1.0
779,145 + ybgF b0742 0.41 +0.2
779,158 - ybgF b0742 0.43 +0.9
779,196 + ybgF b0742 0.47 +0.1
779,201 + ybgF b0742 0.48 +0.3
779,201 + ybgF b0742 0.48 +0.6
779,204 - ybgF b0742 0.48 -0.8

Or see this region's nucleotide sequence