Strain Fitness in Escherichia coli BW25113 around b0726

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsdhB and sucA are separated by 300 nucleotidessucA and sucB are separated by 14 nucleotides b0724: sdhB - succinate dehydrogenase, FeS subunit (NCBI), at 756,912 to 757,628 sdhB b0726: sucA - alpha-ketoglutarate decarboxylase (NCBI), at 757,929 to 760,730 sucA b0727: sucB - dihydrolipoamide acetyltransferase (NCBI), at 760,745 to 761,962 sucB Position (kb) 757 758 759 760 761Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 757.053 kb on + strand, within sdhBat 757.138 kb on - strand, within sdhBat 757.143 kb on - strand, within sdhBat 757.184 kb on - strand, within sdhBat 757.198 kb on + strand, within sdhBat 757.198 kb on + strand, within sdhBat 757.229 kb on - strand, within sdhBat 757.233 kb on + strand, within sdhBat 757.241 kb on - strand, within sdhBat 757.381 kb on - strand, within sdhBat 757.392 kb on - strand, within sdhBat 757.392 kb on - strand, within sdhBat 757.488 kb on + strand, within sdhBat 757.517 kb on - strand, within sdhBat 757.517 kb on - strand, within sdhBat 757.536 kb on + strandat 757.536 kb on + strand, within sdhBat 757.536 kb on - strand, within sdhBat 757.544 kb on + strand, within sdhBat 757.544 kb on - strand, within sdhBat 757.566 kb on - strandat 757.566 kb on - strandat 757.673 kb on + strandat 757.681 kb on - strandat 757.703 kb on + strandat 757.713 kb on - strandat 757.713 kb on - strandat 757.791 kb on + strandat 757.929 kb on - strandat 758.303 kb on + strand, within sucAat 758.313 kb on + strand, within sucAat 759.115 kb on + strand, within sucAat 759.151 kb on + strand, within sucAat 759.205 kb on + strand, within sucAat 759.205 kb on + strand, within sucAat 759.270 kb on + strand, within sucAat 759.270 kb on + strand, within sucAat 759.633 kb on + strand, within sucAat 759.888 kb on + strand, within sucAat 759.888 kb on + strand, within sucAat 759.918 kb on + strand, within sucAat 759.959 kb on + strand, within sucAat 759.961 kb on + strand, within sucAat 759.961 kb on + strand, within sucAat 760.247 kb on + strand, within sucAat 760.469 kb on + strandat 760.665 kb on + strandat 760.667 kb on + strandat 760.880 kb on + strandat 760.880 kb on + strand, within sucBat 761.505 kb on + strand, within sucBat 761.728 kb on + strand, within sucB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
757,053 + sdhB b0724 0.20 -1.4
757,138 - sdhB b0724 0.32 +0.0
757,143 - sdhB b0724 0.32 +0.5
757,184 - sdhB b0724 0.38 -0.5
757,198 + sdhB b0724 0.40 -1.2
757,198 + sdhB b0724 0.40 -0.1
757,229 - sdhB b0724 0.44 -1.4
757,233 + sdhB b0724 0.45 -1.9
757,241 - sdhB b0724 0.46 -1.0
757,381 - sdhB b0724 0.65 -1.2
757,392 - sdhB b0724 0.67 -0.4
757,392 - sdhB b0724 0.67 -0.7
757,488 + sdhB b0724 0.80 -0.8
757,517 - sdhB b0724 0.84 -0.8
757,517 - sdhB b0724 0.84 -0.5
757,536 + -0.1
757,536 + sdhB b0724 0.87 -1.1
757,536 - sdhB b0724 0.87 +0.7
757,544 + sdhB b0724 0.88 -0.6
757,544 - sdhB b0724 0.88 -1.0
757,566 - -0.5
757,566 - -0.7
757,673 + -1.5
757,681 - +0.2
757,703 + -0.2
757,713 - +0.3
757,713 - -0.3
757,791 + -0.6
757,929 - -0.5
758,303 + sucA b0726 0.13 -0.8
758,313 + sucA b0726 0.14 -0.5
759,115 + sucA b0726 0.42 -0.1
759,151 + sucA b0726 0.44 -3.1
759,205 + sucA b0726 0.46 -1.5
759,205 + sucA b0726 0.46 -1.3
759,270 + sucA b0726 0.48 -1.5
759,270 + sucA b0726 0.48 -1.1
759,633 + sucA b0726 0.61 -0.8
759,888 + sucA b0726 0.70 -2.1
759,888 + sucA b0726 0.70 -0.1
759,918 + sucA b0726 0.71 -0.7
759,959 + sucA b0726 0.72 -1.7
759,961 + sucA b0726 0.73 +0.5
759,961 + sucA b0726 0.73 +2.1
760,247 + sucA b0726 0.83 -0.1
760,469 + -1.7
760,665 + -0.8
760,667 + -0.1
760,880 + +0.5
760,880 + sucB b0727 0.11 -1.1
761,505 + sucB b0727 0.62 +0.5
761,728 + sucB b0727 0.81 -2.2

Or see this region's nucleotide sequence