Strain Fitness in Escherichia coli BW25113 around b0075

Experiment: L-Fucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntleuA and leuL are separated by 92 nucleotidesleuL and leuO are separated by 659 nucleotides b0074: leuA - 2-isopropylmalate synthase (NCBI), at 81,958 to 83,529 leuA b0075: leuL - leu operon leader peptide (NCBI), at 83,622 to 83,708 leuL b0076: leuO - probable transcriptional activator for leuABCD operon (VIMSS), at 84,368 to 85,312 leuO Position (kb) 83 84Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 82.624 kb on + strand, within leuAat 82.632 kb on - strand, within leuAat 82.635 kb on + strand, within leuAat 82.637 kb on + strand, within leuAat 82.638 kb on - strand, within leuAat 82.638 kb on - strand, within leuAat 82.647 kb on + strand, within leuAat 82.671 kb on - strand, within leuAat 82.671 kb on - strand, within leuAat 82.671 kb on - strand, within leuAat 82.713 kb on + strand, within leuAat 82.860 kb on + strand, within leuAat 82.860 kb on + strand, within leuAat 82.870 kb on + strand, within leuAat 82.878 kb on - strand, within leuAat 82.963 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.006 kb on + strand, within leuAat 83.190 kb on - strand, within leuAat 83.360 kb on - strand, within leuAat 83.360 kb on - strand, within leuAat 83.465 kb on - strandat 83.465 kb on - strandat 83.470 kb on + strandat 83.486 kb on - strandat 83.525 kb on + strandat 83.525 kb on - strandat 83.547 kb on + strandat 83.557 kb on + strandat 83.561 kb on + strandat 83.610 kb on + strandat 83.619 kb on + strandat 83.620 kb on + strandat 83.620 kb on + strandat 83.620 kb on + strandat 83.622 kb on - strandat 83.625 kb on + strandat 83.627 kb on - strandat 83.627 kb on - strandat 83.627 kb on - strandat 83.627 kb on - strandat 83.635 kb on - strand, within leuLat 83.640 kb on + strand, within leuLat 83.640 kb on + strand, within leuLat 83.642 kb on + strand, within leuLat 83.642 kb on + strand, within leuLat 83.643 kb on - strand, within leuLat 83.643 kb on - strand, within leuLat 83.644 kb on + strand, within leuLat 83.645 kb on - strand, within leuLat 83.650 kb on - strand, within leuLat 83.650 kb on - strand, within leuLat 83.650 kb on - strand, within leuLat 83.650 kb on - strand, within leuLat 83.660 kb on - strand, within leuLat 83.660 kb on - strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.675 kb on + strand, within leuLat 83.676 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.683 kb on - strand, within leuLat 83.691 kb on - strand, within leuLat 83.691 kb on - strand, within leuLat 83.704 kb on - strandat 83.706 kb on - strandat 83.717 kb on + strandat 83.730 kb on + strandat 83.730 kb on + strandat 83.730 kb on - strandat 83.745 kb on - strandat 83.772 kb on + strandat 83.772 kb on + strandat 83.774 kb on - strandat 83.774 kb on - strandat 83.832 kb on + strandat 83.832 kb on + strandat 83.897 kb on + strandat 83.920 kb on + strandat 83.950 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 83.959 kb on + strandat 84.187 kb on + strandat 84.199 kb on + strandat 84.199 kb on + strandat 84.348 kb on + strandat 84.354 kb on - strandat 84.354 kb on - strandat 84.362 kb on - strandat 84.364 kb on - strandat 84.364 kb on - strandat 84.367 kb on - strandat 84.369 kb on - strandat 84.370 kb on + strandat 84.380 kb on + strandat 84.384 kb on - strandat 84.384 kb on - strandat 84.384 kb on - strandat 84.384 kb on - strandat 84.384 kb on - strandat 84.393 kb on - strandat 84.398 kb on - strandat 84.412 kb on - strandat 84.414 kb on + strandat 84.414 kb on + strandat 84.414 kb on + strandat 84.414 kb on + strandat 84.414 kb on - strandat 84.414 kb on - strandat 84.419 kb on + strandat 84.422 kb on - strandat 84.424 kb on + strandat 84.424 kb on + strandat 84.425 kb on + strandat 84.429 kb on - strandat 84.429 kb on - strandat 84.432 kb on - strandat 84.432 kb on - strandat 84.432 kb on - strandat 84.433 kb on - strandat 84.442 kb on - strandat 84.443 kb on - strandat 84.443 kb on - strandat 84.469 kb on - strand, within leuOat 84.480 kb on + strand, within leuOat 84.480 kb on + strand, within leuOat 84.480 kb on + strand, within leuOat 84.480 kb on + strand, within leuOat 84.484 kb on + strand, within leuOat 84.484 kb on + strand, within leuOat 84.486 kb on - strand, within leuOat 84.486 kb on - strand, within leuOat 84.488 kb on - strand, within leuOat 84.488 kb on - strand, within leuOat 84.488 kb on - strand, within leuOat 84.508 kb on - strand, within leuOat 84.515 kb on - strand, within leuOat 84.515 kb on - strand, within leuOat 84.531 kb on + strand, within leuOat 84.531 kb on + strand, within leuOat 84.534 kb on + strand, within leuOat 84.534 kb on - strand, within leuOat 84.534 kb on - strand, within leuOat 84.539 kb on - strand, within leuOat 84.544 kb on + strand, within leuOat 84.544 kb on - strand, within leuOat 84.552 kb on - strand, within leuOat 84.552 kb on - strand, within leuOat 84.556 kb on + strand, within leuOat 84.591 kb on + strand, within leuOat 84.591 kb on + strand, within leuOat 84.591 kb on + strand, within leuOat 84.593 kb on - strand, within leuOat 84.599 kb on - strand, within leuOat 84.603 kb on - strand, within leuOat 84.635 kb on + strand, within leuOat 84.635 kb on + strand, within leuOat 84.644 kb on - strand, within leuOat 84.648 kb on + strand, within leuOat 84.648 kb on + strand, within leuOat 84.648 kb on + strand, within leuOat 84.648 kb on + strand, within leuOat 84.658 kb on - strand, within leuOat 84.658 kb on - strand, within leuOat 84.671 kb on + strand, within leuOat 84.696 kb on + strand, within leuOat 84.696 kb on + strand, within leuO

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
remove
82,624 + leuA b0074 0.42 -4.0
82,632 - leuA b0074 0.43 -4.3
82,635 + leuA b0074 0.43 -4.2
82,637 + leuA b0074 0.43 -3.6
82,638 - leuA b0074 0.43 -2.0
82,638 - leuA b0074 0.43 -2.3
82,647 + leuA b0074 0.44 -4.0
82,671 - leuA b0074 0.45 -3.3
82,671 - leuA b0074 0.45 -3.0
82,671 - leuA b0074 0.45 -2.7
82,713 + leuA b0074 0.48 -3.6
82,860 + leuA b0074 0.57 -1.2
82,860 + leuA b0074 0.57 -0.9
82,870 + leuA b0074 0.58 -4.1
82,878 - leuA b0074 0.59 -1.3
82,963 + leuA b0074 0.64 -3.3
83,006 + leuA b0074 0.67 -2.9
83,006 + leuA b0074 0.67 -3.5
83,006 + leuA b0074 0.67 -3.7
83,006 + leuA b0074 0.67 -2.3
83,006 + leuA b0074 0.67 -2.8
83,190 - leuA b0074 0.78 -2.6
83,360 - leuA b0074 0.89 -3.5
83,360 - leuA b0074 0.89 -3.4
83,465 - -2.9
83,465 - -2.2
83,470 + -3.3
83,486 - -4.3
83,525 + -4.4
83,525 - -3.8
83,547 + -3.0
83,557 + -2.9
83,561 + -4.9
83,610 + -3.3
83,619 + -3.4
83,620 + -1.8
83,620 + -3.0
83,620 + -1.9
83,622 - -3.0
83,625 + -2.2
83,627 - -4.0
83,627 - -4.1
83,627 - -2.4
83,627 - -4.0
83,635 - leuL b0075 0.15 -2.3
83,640 + leuL b0075 0.21 -2.7
83,640 + leuL b0075 0.21 -2.3
83,642 + leuL b0075 0.23 -2.4
83,642 + leuL b0075 0.23 -3.7
83,643 - leuL b0075 0.24 -2.9
83,643 - leuL b0075 0.24 -2.0
83,644 + leuL b0075 0.25 -3.4
83,645 - leuL b0075 0.26 -3.8
83,650 - leuL b0075 0.32 -3.7
83,650 - leuL b0075 0.32 -4.4
83,650 - leuL b0075 0.32 -4.3
83,650 - leuL b0075 0.32 -2.6
83,660 - leuL b0075 0.44 +0.5
83,660 - leuL b0075 0.44 -0.3
83,675 + leuL b0075 0.61 -3.5
83,675 + leuL b0075 0.61 -3.6
83,675 + leuL b0075 0.61 -2.5
83,675 + leuL b0075 0.61 -3.7
83,675 + leuL b0075 0.61 -2.6
83,675 + leuL b0075 0.61 -3.5
83,676 - leuL b0075 0.62 +0.4
83,683 - leuL b0075 0.70 +1.0
83,683 - leuL b0075 0.70 -0.3
83,683 - leuL b0075 0.70 -0.6
83,683 - leuL b0075 0.70 +0.3
83,683 - leuL b0075 0.70 +0.5
83,683 - leuL b0075 0.70 +0.9
83,683 - leuL b0075 0.70 +0.7
83,691 - leuL b0075 0.79 -1.0
83,691 - leuL b0075 0.79 +0.2
83,704 - +0.7
83,706 - -0.6
83,717 + -4.2
83,730 + -1.3
83,730 + -1.9
83,730 - -1.0
83,745 - -1.3
83,772 + -1.4
83,772 + -1.0
83,774 - -0.8
83,774 - -1.6
83,832 + -1.8
83,832 + -0.5
83,897 + -0.2
83,920 + +0.2
83,950 + +1.7
83,959 + -2.7
83,959 + +0.6
83,959 + +0.1
83,959 + -0.6
83,959 + -1.2
83,959 + +1.0
84,187 + -2.0
84,199 + +0.9
84,199 + -2.7
84,348 + -0.4
84,354 - -0.6
84,354 - -0.3
84,362 - -0.7
84,364 - -1.4
84,364 - -0.6
84,367 - +1.0
84,369 - +0.6
84,370 + -1.2
84,380 + -1.5
84,384 - +0.2
84,384 - -0.0
84,384 - -0.1
84,384 - -1.0
84,384 - -0.3
84,393 - -0.3
84,398 - -0.6
84,412 - -1.0
84,414 + -0.1
84,414 + -2.2
84,414 + +0.6
84,414 + -1.4
84,414 - +0.7
84,414 - -0.4
84,419 + -1.8
84,422 - -0.9
84,424 + +0.1
84,424 + -0.2
84,425 + -0.2
84,429 - -0.7
84,429 - -0.9
84,432 - -1.3
84,432 - -0.2
84,432 - -0.9
84,433 - -1.2
84,442 - -0.5
84,443 - +0.7
84,443 - -0.7
84,469 - leuO b0076 0.11 -0.9
84,480 + leuO b0076 0.12 -0.6
84,480 + leuO b0076 0.12 -1.5
84,480 + leuO b0076 0.12 -0.7
84,480 + leuO b0076 0.12 -0.3
84,484 + leuO b0076 0.12 +0.7
84,484 + leuO b0076 0.12 -0.3
84,486 - leuO b0076 0.12 -0.4
84,486 - leuO b0076 0.12 +0.4
84,488 - leuO b0076 0.13 -1.8
84,488 - leuO b0076 0.13 -0.3
84,488 - leuO b0076 0.13 -0.6
84,508 - leuO b0076 0.15 -0.6
84,515 - leuO b0076 0.16 +0.1
84,515 - leuO b0076 0.16 -0.3
84,531 + leuO b0076 0.17 +0.2
84,531 + leuO b0076 0.17 -0.9
84,534 + leuO b0076 0.18 -1.2
84,534 - leuO b0076 0.18 -2.4
84,534 - leuO b0076 0.18 -0.5
84,539 - leuO b0076 0.18 -1.1
84,544 + leuO b0076 0.19 +0.2
84,544 - leuO b0076 0.19 +0.8
84,552 - leuO b0076 0.19 -0.3
84,552 - leuO b0076 0.19 -2.2
84,556 + leuO b0076 0.20 -0.9
84,591 + leuO b0076 0.24 +0.4
84,591 + leuO b0076 0.24 -0.9
84,591 + leuO b0076 0.24 -1.1
84,593 - leuO b0076 0.24 -0.6
84,599 - leuO b0076 0.24 -0.3
84,603 - leuO b0076 0.25 -1.3
84,635 + leuO b0076 0.28 +0.5
84,635 + leuO b0076 0.28 +0.2
84,644 - leuO b0076 0.29 -0.8
84,648 + leuO b0076 0.30 -1.1
84,648 + leuO b0076 0.30 -0.2
84,648 + leuO b0076 0.30 -1.2
84,648 + leuO b0076 0.30 -0.7
84,658 - leuO b0076 0.31 +0.2
84,658 - leuO b0076 0.31 +0.8
84,671 + leuO b0076 0.32 -0.1
84,696 + leuO b0076 0.35 -0.2
84,696 + leuO b0076 0.35 +0.1

Or see this region's nucleotide sequence