Strain Fitness in Escherichia coli BW25113 around b0062

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaraD and araA are separated by 284 nucleotidesaraA and araB are separated by 10 nucleotides b0061: araD - L-ribulose-5-phosphate 4-epimerase (NCBI), at 65,855 to 66,550 araD b0062: araA - L-arabinose isomerase (NCBI), at 66,835 to 68,337 araA b0063: araB - ribulokinase (NCBI), at 68,348 to 70,048 araB Position (kb) 66 67 68 69Strain fitness (log2 ratio) -2 -1 0 1at 65.865 kb on + strandat 65.873 kb on - strandat 65.873 kb on - strandat 65.883 kb on + strandat 65.883 kb on + strandat 65.891 kb on - strandat 65.900 kb on - strandat 65.949 kb on + strand, within araDat 65.949 kb on + strand, within araDat 65.977 kb on + strand, within araDat 66.057 kb on - strand, within araDat 66.057 kb on - strand, within araDat 66.195 kb on + strand, within araDat 66.226 kb on + strand, within araDat 66.226 kb on + strand, within araDat 66.271 kb on - strand, within araDat 66.271 kb on - strand, within araDat 66.276 kb on - strand, within araDat 66.381 kb on + strand, within araDat 66.381 kb on + strand, within araDat 66.470 kb on + strand, within araDat 66.470 kb on + strand, within araDat 66.473 kb on - strand, within araDat 66.473 kb on - strand, within araDat 66.483 kb on - strandat 66.484 kb on + strandat 66.484 kb on + strandat 66.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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65,865 + -0.6
65,873 - -1.8
65,873 - +0.8
65,883 + -0.8
65,883 + -1.7
65,891 - -0.2
65,900 - +0.1
65,949 + araD b0061 0.14 -0.3
65,949 + araD b0061 0.14 -0.2
65,977 + araD b0061 0.18 +0.1
66,057 - araD b0061 0.29 -0.5
66,057 - araD b0061 0.29 -0.3
66,195 + araD b0061 0.49 +0.2
66,226 + araD b0061 0.53 -0.3
66,226 + araD b0061 0.53 -1.2
66,271 - araD b0061 0.60 -0.6
66,271 - araD b0061 0.60 +0.1
66,276 - araD b0061 0.60 +1.2
66,381 + araD b0061 0.76 -0.3
66,381 + araD b0061 0.76 -1.3
66,470 + araD b0061 0.88 -0.6
66,470 + araD b0061 0.88 -0.7
66,473 - araD b0061 0.89 +0.2
66,473 - araD b0061 0.89 -1.0
66,483 - +0.7
66,484 + +1.1
66,484 + -0.6
66,527 - -0.1

Or see this region's nucleotide sequence