Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_72

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_71 and PfGW456L13_72 are separated by 396 nucleotidesPfGW456L13_72 and PfGW456L13_73 are separated by 155 nucleotidesPfGW456L13_73 and PfGW456L13_74 are separated by 47 nucleotides PfGW456L13_71 - Cobalt-precorrin-6x reductase (EC 1.3.1.54), at 82,486 to 83,211 _71 PfGW456L13_72 - hypothetical protein, at 83,608 to 83,931 _72 PfGW456L13_73 - FIG00955840: hypothetical protein, at 84,087 to 84,440 _73 PfGW456L13_74 - Copper metallochaperone, bacterial analog of Cox17 protein, at 84,488 to 84,967 _74 Position (kb) 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1at 82.653 kb on + strand, within PfGW456L13_71at 82.699 kb on + strand, within PfGW456L13_71at 83.180 kb on + strandat 83.180 kb on + strandat 83.180 kb on + strandat 83.180 kb on + strandat 83.180 kb on + strandat 83.181 kb on - strandat 83.181 kb on - strandat 83.209 kb on + strandat 83.286 kb on + strandat 83.286 kb on + strandat 83.287 kb on - strandat 83.287 kb on - strandat 83.287 kb on - strandat 83.290 kb on + strandat 83.290 kb on + strandat 83.290 kb on + strandat 83.290 kb on + strandat 83.291 kb on - strandat 83.291 kb on - strandat 83.291 kb on - strandat 83.291 kb on - strandat 83.359 kb on + strandat 83.359 kb on + strandat 83.359 kb on + strandat 83.360 kb on - strandat 83.360 kb on - strandat 83.386 kb on + strandat 83.387 kb on - strandat 83.393 kb on + strandat 83.393 kb on + strandat 83.393 kb on + strandat 83.394 kb on - strandat 83.394 kb on - strandat 83.437 kb on + strandat 83.438 kb on - strandat 83.455 kb on - strandat 83.456 kb on + strandat 83.456 kb on + strandat 83.456 kb on + strandat 83.457 kb on - strandat 83.457 kb on - strandat 83.457 kb on - strandat 83.457 kb on - strandat 83.457 kb on - strandat 83.457 kb on - strandat 83.457 kb on - strandat 83.463 kb on + strandat 83.464 kb on - strandat 83.464 kb on - strandat 83.551 kb on + strandat 83.552 kb on - strandat 83.602 kb on - strandat 83.698 kb on - strand, within PfGW456L13_72at 83.868 kb on - strand, within PfGW456L13_72at 83.897 kb on + strand, within PfGW456L13_72at 83.897 kb on + strand, within PfGW456L13_72at 83.897 kb on + strand, within PfGW456L13_72at 83.897 kb on + strand, within PfGW456L13_72at 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.903 kb on + strandat 83.904 kb on - strandat 83.904 kb on - strandat 83.904 kb on - strandat 83.904 kb on - strandat 83.904 kb on - strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.909 kb on + strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.910 kb on - strandat 83.976 kb on + strandat 83.976 kb on + strandat 83.980 kb on + strandat 83.981 kb on - strandat 83.998 kb on + strandat 83.998 kb on + strandat 83.999 kb on - strandat 83.999 kb on - strandat 84.317 kb on + strand, within PfGW456L13_73at 84.317 kb on + strand, within PfGW456L13_73at 84.330 kb on + strand, within PfGW456L13_73

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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82,653 + PfGW456L13_71 0.23 +0.3
82,699 + PfGW456L13_71 0.29 -1.4
83,180 + +1.7
83,180 + +1.0
83,180 + +0.3
83,180 + -1.4
83,180 + +1.5
83,181 - +0.9
83,181 - -2.6
83,209 + -0.1
83,286 + -0.3
83,286 + -0.2
83,287 - +0.6
83,287 - -0.5
83,287 - -0.5
83,290 + +0.9
83,290 + -0.9
83,290 + -1.7
83,290 + +0.1
83,291 - -0.2
83,291 - +0.7
83,291 - -1.1
83,291 - +0.8
83,359 + +0.7
83,359 + -1.5
83,359 + +0.0
83,360 - -0.7
83,360 - +0.3
83,386 + -0.9
83,387 - +0.1
83,393 + +0.6
83,393 + -3.6
83,393 + -2.9
83,394 - -0.2
83,394 - -0.3
83,437 + +0.7
83,438 - +0.7
83,455 - +0.4
83,456 + -0.2
83,456 + +0.6
83,456 + -0.1
83,457 - -0.8
83,457 - -1.3
83,457 - -2.8
83,457 - +0.5
83,457 - +0.7
83,457 - -0.9
83,457 - +0.4
83,463 + -0.1
83,464 - -0.8
83,464 - -1.2
83,551 + +1.6
83,552 - +0.7
83,602 - -3.3
83,698 - PfGW456L13_72 0.28 -2.3
83,868 - PfGW456L13_72 0.80 -1.5
83,897 + PfGW456L13_72 0.89 -2.7
83,897 + PfGW456L13_72 0.89 -1.2
83,897 + PfGW456L13_72 0.89 -1.2
83,897 + PfGW456L13_72 0.89 -0.9
83,903 + +0.1
83,903 + -0.4
83,903 + -1.4
83,903 + -0.6
83,903 + -0.8
83,903 + -1.7
83,903 + -1.5
83,903 + -1.3
83,904 - -3.6
83,904 - -0.2
83,904 - +0.3
83,904 - +0.3
83,904 - +0.8
83,909 + -1.5
83,909 + +0.4
83,909 + +0.5
83,909 + -1.5
83,909 + -2.3
83,909 + +0.8
83,909 + -0.9
83,909 + +0.4
83,910 - -0.1
83,910 - +0.4
83,910 - -2.3
83,910 - -0.5
83,910 - -0.2
83,910 - +0.9
83,910 - +1.1
83,910 - +0.4
83,910 - -1.7
83,910 - -0.4
83,910 - -0.3
83,910 - -0.5
83,976 + -1.6
83,976 + +0.9
83,980 + -1.2
83,981 - +1.5
83,998 + +0.3
83,998 + -0.4
83,999 - +0.8
83,999 - -0.9
84,317 + PfGW456L13_73 0.65 +1.5
84,317 + PfGW456L13_73 0.65 -1.5
84,330 + PfGW456L13_73 0.69 +0.7

Or see this region's nucleotide sequence