Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_480 and PfGW456L13_481 are separated by 123 nucleotides PfGW456L13_481 and PfGW456L13_482 are separated by 83 nucleotides PfGW456L13_482 and PfGW456L13_483 are separated by 90 nucleotides
PfGW456L13_480 - Transcriptional regulator, AraC family, at 551,498 to 552,502
_480
PfGW456L13_481 - transcriptional regulator, Crp/Fnr family, at 552,626 to 553,312
_481
PfGW456L13_482 - FIG028593: membrane protein, at 553,396 to 553,920
_482
PfGW456L13_483 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 554,011 to 555,000
_483
Position (kb) 553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 552.407 kb on + strand at 552.407 kb on + strand at 552.407 kb on + strand at 552.408 kb on - strand at 552.408 kb on - strand at 552.609 kb on + strand at 552.609 kb on + strand at 552.609 kb on + strand at 552.609 kb on + strand at 552.609 kb on + strand at 552.609 kb on + strand at 552.610 kb on - strand at 552.610 kb on - strand at 552.610 kb on - strand at 552.610 kb on - strand at 552.610 kb on - strand at 552.610 kb on - strand at 552.627 kb on + strand at 552.627 kb on + strand at 552.628 kb on - strand at 552.628 kb on - strand at 552.682 kb on - strand at 552.817 kb on - strand, within PfGW456L13_481 at 552.817 kb on - strand, within PfGW456L13_481 at 553.237 kb on + strand, within PfGW456L13_481 at 553.307 kb on - strand at 553.323 kb on - strand at 553.381 kb on + strand at 553.381 kb on + strand at 553.382 kb on - strand at 553.426 kb on + strand at 553.426 kb on + strand at 553.426 kb on + strand at 553.426 kb on + strand at 553.426 kb on + strand at 553.588 kb on + strand, within PfGW456L13_482 at 553.589 kb on - strand, within PfGW456L13_482 at 553.750 kb on + strand, within PfGW456L13_482 at 553.751 kb on - strand, within PfGW456L13_482 at 553.919 kb on - strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.958 kb on + strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.959 kb on - strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.969 kb on + strand at 553.970 kb on - strand at 553.970 kb on - strand at 553.970 kb on - strand at 553.970 kb on - strand at 553.970 kb on - strand at 553.970 kb on - strand at 553.970 kb on - strand at 553.970 kb on - strand at 554.012 kb on + strand at 554.012 kb on + strand at 554.013 kb on - strand at 554.016 kb on + strand at 554.300 kb on + strand, within PfGW456L13_483 at 554.300 kb on + strand, within PfGW456L13_483 at 554.301 kb on - strand, within PfGW456L13_483 at 554.301 kb on - strand, within PfGW456L13_483 at 554.383 kb on - strand, within PfGW456L13_483
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 552,407 + -1.1 552,407 + -0.3 552,407 + +0.7 552,408 - +1.3 552,408 - +1.0 552,609 + +0.7 552,609 + -0.1 552,609 + +0.3 552,609 + +0.1 552,609 + -1.3 552,609 + +0.3 552,610 - -0.5 552,610 - +0.2 552,610 - -0.9 552,610 - +1.2 552,610 - +0.7 552,610 - +1.7 552,627 + -0.2 552,627 + +0.9 552,628 - +0.3 552,628 - +1.1 552,682 - +0.1 552,817 - PfGW456L13_481 0.28 +0.0 552,817 - PfGW456L13_481 0.28 +0.7 553,237 + PfGW456L13_481 0.89 +0.9 553,307 - +0.3 553,323 - +0.6 553,381 + +2.5 553,381 + +0.5 553,382 - -0.9 553,426 + -0.4 553,426 + -0.3 553,426 + -0.6 553,426 + +0.5 553,426 + -0.5 553,588 + PfGW456L13_482 0.37 -0.2 553,589 - PfGW456L13_482 0.37 -1.0 553,750 + PfGW456L13_482 0.67 -1.3 553,751 - PfGW456L13_482 0.68 -0.9 553,919 - -0.9 553,958 + +0.2 553,958 + +0.2 553,958 + -1.4 553,958 + -0.6 553,958 + -0.3 553,958 + +0.9 553,958 + -1.1 553,958 + -0.2 553,958 + -1.1 553,958 + +1.2 553,958 + +0.0 553,958 + +0.5 553,958 + +0.1 553,959 - -1.4 553,959 - +0.5 553,959 - +0.1 553,959 - -0.9 553,959 - +0.5 553,959 - -0.6 553,959 - +0.6 553,959 - +2.0 553,959 - -2.0 553,959 - +0.4 553,959 - +0.0 553,959 - +0.1 553,969 + -2.1 553,969 + -0.9 553,969 + -0.1 553,969 + -0.3 553,969 + +0.2 553,969 + -2.5 553,969 + -2.0 553,969 + +0.3 553,969 + +0.9 553,969 + +0.1 553,969 + +0.9 553,969 + +0.4 553,969 + +0.3 553,970 - +0.8 553,970 - +1.2 553,970 - -2.9 553,970 - -0.2 553,970 - +1.2 553,970 - -0.3 553,970 - -0.5 553,970 - -0.9 554,012 + -0.0 554,012 + +0.1 554,013 - +1.2 554,016 + -1.1 554,300 + PfGW456L13_483 0.29 -0.2 554,300 + PfGW456L13_483 0.29 +0.6 554,301 - PfGW456L13_483 0.29 -0.3 554,301 - PfGW456L13_483 0.29 +0.4 554,383 - PfGW456L13_483 0.38 +0.2
Or see this region's nucleotide sequence