Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3306

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_3305 and PfGW456L13_3306 overlap by 13 nucleotidesPfGW456L13_3306 and PfGW456L13_3307 overlap by 15 nucleotides PfGW456L13_3305 - BatD, at 3,714,237 to 3,715,886 _3305 PfGW456L13_3306 - hypothetical protein, at 3,715,874 to 3,716,209 _3306 PfGW456L13_3307 - Exonuclease SbcD, at 3,716,195 to 3,717,439 _3307 Position (kb) 3715 3716 3717Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3714.934 kb on + strand, within PfGW456L13_3305at 3715.026 kb on + strand, within PfGW456L13_3305at 3715.027 kb on - strand, within PfGW456L13_3305at 3715.493 kb on + strand, within PfGW456L13_3305at 3715.720 kb on + strand, within PfGW456L13_3305at 3715.761 kb on + strandat 3715.761 kb on + strandat 3715.762 kb on - strandat 3715.779 kb on + strandat 3715.780 kb on - strandat 3715.884 kb on + strandat 3715.885 kb on - strandat 3715.885 kb on - strandat 3715.885 kb on - strandat 3715.885 kb on - strandat 3715.885 kb on - strandat 3715.957 kb on - strand, within PfGW456L13_3306at 3716.085 kb on + strand, within PfGW456L13_3306at 3716.085 kb on + strand, within PfGW456L13_3306at 3716.120 kb on + strand, within PfGW456L13_3306at 3716.120 kb on + strand, within PfGW456L13_3306at 3716.121 kb on - strand, within PfGW456L13_3306at 3716.126 kb on + strand, within PfGW456L13_3306at 3716.170 kb on + strand, within PfGW456L13_3306at 3716.171 kb on - strand, within PfGW456L13_3306at 3716.174 kb on + strand, within PfGW456L13_3306at 3716.174 kb on + strand, within PfGW456L13_3306at 3716.175 kb on - strand, within PfGW456L13_3306at 3716.175 kb on - strand, within PfGW456L13_3306at 3716.384 kb on + strand, within PfGW456L13_3307at 3716.666 kb on + strand, within PfGW456L13_3307at 3716.666 kb on + strand, within PfGW456L13_3307at 3716.666 kb on + strand, within PfGW456L13_3307at 3716.666 kb on + strand, within PfGW456L13_3307at 3716.666 kb on + strand, within PfGW456L13_3307at 3716.666 kb on + strand, within PfGW456L13_3307at 3716.666 kb on + strand, within PfGW456L13_3307at 3716.666 kb on + strand, within PfGW456L13_3307at 3716.667 kb on - strand, within PfGW456L13_3307at 3716.861 kb on + strand, within PfGW456L13_3307at 3716.862 kb on - strand, within PfGW456L13_3307at 3716.862 kb on - strand, within PfGW456L13_3307at 3716.862 kb on - strand, within PfGW456L13_3307at 3716.862 kb on - strand, within PfGW456L13_3307at 3716.922 kb on - strand, within PfGW456L13_3307at 3716.963 kb on + strand, within PfGW456L13_3307at 3716.964 kb on - strand, within PfGW456L13_3307at 3716.964 kb on - strand, within PfGW456L13_3307

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
3,714,934 + PfGW456L13_3305 0.42 -2.8
3,715,026 + PfGW456L13_3305 0.48 -2.7
3,715,027 - PfGW456L13_3305 0.48 -1.2
3,715,493 + PfGW456L13_3305 0.76 -3.3
3,715,720 + PfGW456L13_3305 0.90 -3.1
3,715,761 + -1.2
3,715,761 + -3.3
3,715,762 - -3.2
3,715,779 + -1.6
3,715,780 - -0.4
3,715,884 + -0.2
3,715,885 - +0.3
3,715,885 - -0.2
3,715,885 - +0.1
3,715,885 - +1.1
3,715,885 - +1.9
3,715,957 - PfGW456L13_3306 0.25 -0.1
3,716,085 + PfGW456L13_3306 0.63 -1.6
3,716,085 + PfGW456L13_3306 0.63 -0.2
3,716,120 + PfGW456L13_3306 0.73 -0.3
3,716,120 + PfGW456L13_3306 0.73 -1.8
3,716,121 - PfGW456L13_3306 0.74 +0.1
3,716,126 + PfGW456L13_3306 0.75 +0.1
3,716,170 + PfGW456L13_3306 0.88 -0.4
3,716,171 - PfGW456L13_3306 0.88 +1.4
3,716,174 + PfGW456L13_3306 0.89 +0.0
3,716,174 + PfGW456L13_3306 0.89 -0.5
3,716,175 - PfGW456L13_3306 0.90 +0.0
3,716,175 - PfGW456L13_3306 0.90 +0.4
3,716,384 + PfGW456L13_3307 0.15 +1.0
3,716,666 + PfGW456L13_3307 0.38 -2.2
3,716,666 + PfGW456L13_3307 0.38 +0.5
3,716,666 + PfGW456L13_3307 0.38 +0.8
3,716,666 + PfGW456L13_3307 0.38 -0.6
3,716,666 + PfGW456L13_3307 0.38 -0.0
3,716,666 + PfGW456L13_3307 0.38 +0.8
3,716,666 + PfGW456L13_3307 0.38 -0.8
3,716,666 + PfGW456L13_3307 0.38 -1.1
3,716,667 - PfGW456L13_3307 0.38 -0.5
3,716,861 + PfGW456L13_3307 0.53 +0.8
3,716,862 - PfGW456L13_3307 0.54 -2.9
3,716,862 - PfGW456L13_3307 0.54 +0.5
3,716,862 - PfGW456L13_3307 0.54 -0.4
3,716,862 - PfGW456L13_3307 0.54 +0.4
3,716,922 - PfGW456L13_3307 0.58 -0.7
3,716,963 + PfGW456L13_3307 0.62 +2.0
3,716,964 - PfGW456L13_3307 0.62 +0.6
3,716,964 - PfGW456L13_3307 0.62 -0.0

Or see this region's nucleotide sequence