Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_322

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_321 and PfGW456L13_322 are separated by 150 nucleotidesPfGW456L13_322 and PfGW456L13_323 overlap by 4 nucleotidesPfGW456L13_323 and PfGW456L13_324 are separated by 70 nucleotides PfGW456L13_321 - Histidine ammonia-lyase (EC 4.3.1.3), at 375,421 to 376,944 _321 PfGW456L13_322 - Histidine ABC transporter, ATP-binding protein (TC 3.A.1), at 377,095 to 377,925 _322 PfGW456L13_323 - Histidine ABC transporter, permease protein (TC 3.A.1), at 377,922 to 378,773 _323 PfGW456L13_324 - Histidine ABC transporter, histidine-binding protein (TC 3.A.1), at 378,844 to 379,812 _324 Position (kb) 377 378Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 376.451 kb on + strand, within PfGW456L13_321at 376.452 kb on - strand, within PfGW456L13_321at 376.613 kb on + strand, within PfGW456L13_321at 376.613 kb on + strand, within PfGW456L13_321at 376.666 kb on + strand, within PfGW456L13_321at 376.959 kb on + strandat 376.960 kb on - strandat 376.960 kb on - strandat 376.960 kb on - strandat 376.972 kb on - strandat 377.096 kb on + strandat 377.096 kb on + strandat 377.097 kb on - strandat 377.135 kb on + strandat 377.135 kb on + strandat 377.135 kb on + strandat 377.135 kb on + strandat 377.135 kb on + strandat 377.136 kb on - strandat 377.136 kb on - strandat 377.136 kb on - strandat 377.136 kb on - strandat 377.433 kb on - strand, within PfGW456L13_322at 377.433 kb on - strand, within PfGW456L13_322at 377.631 kb on - strand, within PfGW456L13_322at 377.631 kb on - strand, within PfGW456L13_322at 377.953 kb on + strandat 377.953 kb on + strandat 377.953 kb on + strandat 377.954 kb on - strandat 377.954 kb on - strandat 377.954 kb on - strandat 377.963 kb on + strandat 377.963 kb on + strandat 377.964 kb on - strandat 377.964 kb on - strandat 378.046 kb on - strand, within PfGW456L13_323at 378.283 kb on + strand, within PfGW456L13_323at 378.284 kb on - strand, within PfGW456L13_323at 378.284 kb on - strand, within PfGW456L13_323at 378.349 kb on + strand, within PfGW456L13_323at 378.350 kb on - strand, within PfGW456L13_323at 378.589 kb on - strand, within PfGW456L13_323at 378.755 kb on + strandat 378.773 kb on + strandat 378.773 kb on + strandat 378.773 kb on + strandat 378.773 kb on + strandat 378.773 kb on + strandat 378.774 kb on - strandat 378.774 kb on - strandat 378.774 kb on - strandat 378.774 kb on - strandat 378.774 kb on - strandat 378.845 kb on + strandat 378.845 kb on + strandat 378.845 kb on + strandat 378.846 kb on - strandat 378.846 kb on - strandat 378.846 kb on - strandat 378.846 kb on - strandat 378.846 kb on - strandat 378.846 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
376,451 + PfGW456L13_321 0.68 -2.4
376,452 - PfGW456L13_321 0.68 +0.2
376,613 + PfGW456L13_321 0.78 -4.6
376,613 + PfGW456L13_321 0.78 -4.1
376,666 + PfGW456L13_321 0.82 -3.1
376,959 + -1.7
376,960 - -3.2
376,960 - -1.6
376,960 - -2.3
376,972 - -1.1
377,096 + -1.9
377,096 + -2.3
377,097 - +1.4
377,135 + -4.0
377,135 + -3.8
377,135 + -3.1
377,135 + -2.7
377,135 + -2.8
377,136 - +0.9
377,136 - +1.2
377,136 - +1.6
377,136 - +0.9
377,433 - PfGW456L13_322 0.41 +0.3
377,433 - PfGW456L13_322 0.41 -0.0
377,631 - PfGW456L13_322 0.65 -1.8
377,631 - PfGW456L13_322 0.65 -0.7
377,953 + -3.0
377,953 + -4.7
377,953 + -4.0
377,954 - -1.1
377,954 - +0.9
377,954 - +0.4
377,963 + -3.1
377,963 + -2.4
377,964 - +1.7
377,964 - -1.7
378,046 - PfGW456L13_323 0.15 +0.3
378,283 + PfGW456L13_323 0.42 -3.2
378,284 - PfGW456L13_323 0.42 +1.1
378,284 - PfGW456L13_323 0.42 +0.7
378,349 + PfGW456L13_323 0.50 -3.0
378,350 - PfGW456L13_323 0.50 +1.8
378,589 - PfGW456L13_323 0.78 -1.1
378,755 + -4.6
378,773 + -4.0
378,773 + -3.1
378,773 + -4.4
378,773 + -1.5
378,773 + -2.5
378,774 - -3.6
378,774 - -2.0
378,774 - -1.4
378,774 - -2.2
378,774 - -2.7
378,845 + -3.3
378,845 + -4.0
378,845 + -2.2
378,846 - +0.8
378,846 - +1.5
378,846 - +1.5
378,846 - +1.3
378,846 - +1.7
378,846 - -0.4

Or see this region's nucleotide sequence