Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2150

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2148 and PfGW456L13_2149 are separated by 64 nucleotidesPfGW456L13_2149 and PfGW456L13_2150 are separated by 154 nucleotidesPfGW456L13_2150 and PfGW456L13_2151 are separated by 5 nucleotidesPfGW456L13_2151 and PfGW456L13_2152 are separated by 201 nucleotides PfGW456L13_2148 - Oxidoreductase, short chain dehydrogenase/reductase family, at 2,350,267 to 2,351,082 _2148 PfGW456L13_2149 - Protein of unknown function UPF0060, at 2,351,147 to 2,351,479 _2149 PfGW456L13_2150 - Carbon storage regulator, at 2,351,634 to 2,351,819 _2150 PfGW456L13_2151 - FIG00953242: hypothetical protein, at 2,351,825 to 2,352,052 _2151 PfGW456L13_2152 - Deblocking aminopeptidase (EC 3.4.11.-) @ Cyanophycinase 2 (EC 3.4.15.6), at 2,352,254 to 2,353,444 _2152 Position (kb) 2351 2352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2350.714 kb on + strand, within PfGW456L13_2148at 2350.714 kb on + strand, within PfGW456L13_2148at 2350.714 kb on + strand, within PfGW456L13_2148at 2350.714 kb on + strand, within PfGW456L13_2148at 2350.715 kb on - strand, within PfGW456L13_2148at 2350.715 kb on - strand, within PfGW456L13_2148at 2350.715 kb on - strandat 2350.715 kb on - strand, within PfGW456L13_2148at 2350.715 kb on - strand, within PfGW456L13_2148at 2350.715 kb on - strand, within PfGW456L13_2148at 2350.715 kb on - strand, within PfGW456L13_2148at 2350.715 kb on - strand, within PfGW456L13_2148at 2350.921 kb on + strand, within PfGW456L13_2148at 2350.921 kb on + strand, within PfGW456L13_2148at 2350.921 kb on + strand, within PfGW456L13_2148at 2350.921 kb on + strand, within PfGW456L13_2148at 2350.922 kb on - strand, within PfGW456L13_2148at 2350.922 kb on - strand, within PfGW456L13_2148at 2350.922 kb on - strand, within PfGW456L13_2148at 2350.922 kb on - strand, within PfGW456L13_2148at 2350.922 kb on - strand, within PfGW456L13_2148at 2350.922 kb on - strand, within PfGW456L13_2148at 2350.927 kb on + strand, within PfGW456L13_2148at 2350.927 kb on + strand, within PfGW456L13_2148at 2350.927 kb on + strand, within PfGW456L13_2148at 2350.927 kb on + strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2350.928 kb on - strand, within PfGW456L13_2148at 2351.020 kb on + strandat 2351.152 kb on + strandat 2351.152 kb on + strandat 2351.152 kb on + strandat 2351.152 kb on + strandat 2351.152 kb on + strandat 2351.152 kb on + strandat 2351.152 kb on + strandat 2351.152 kb on + strandat 2351.153 kb on - strandat 2351.153 kb on - strandat 2351.153 kb on - strandat 2351.153 kb on - strandat 2351.153 kb on - strandat 2351.153 kb on - strandat 2351.153 kb on - strandat 2351.156 kb on + strandat 2351.156 kb on + strandat 2351.156 kb on + strandat 2351.156 kb on + strandat 2351.157 kb on - strandat 2351.157 kb on - strandat 2351.157 kb on - strandat 2351.157 kb on - strandat 2351.157 kb on - strandat 2351.157 kb on - strandat 2351.157 kb on - strandat 2351.157 kb on - strandat 2351.230 kb on + strand, within PfGW456L13_2149at 2351.231 kb on - strand, within PfGW456L13_2149at 2351.309 kb on + strand, within PfGW456L13_2149at 2351.309 kb on + strand, within PfGW456L13_2149at 2351.309 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.345 kb on + strand, within PfGW456L13_2149at 2351.346 kb on - strand, within PfGW456L13_2149at 2351.346 kb on - strand, within PfGW456L13_2149at 2351.346 kb on - strand, within PfGW456L13_2149at 2351.346 kb on - strand, within PfGW456L13_2149at 2351.346 kb on - strand, within PfGW456L13_2149at 2351.491 kb on + strandat 2351.492 kb on - strandat 2351.492 kb on - strandat 2351.492 kb on - strandat 2351.521 kb on + strandat 2351.521 kb on + strandat 2351.522 kb on - strandat 2351.576 kb on + strandat 2351.576 kb on + strandat 2351.576 kb on + strandat 2351.576 kb on + strandat 2351.576 kb on + strandat 2351.576 kb on + strandat 2351.577 kb on - strandat 2351.577 kb on - strandat 2351.577 kb on - strandat 2351.577 kb on - strandat 2351.641 kb on + strandat 2351.641 kb on + strandat 2351.641 kb on + strandat 2351.642 kb on - strandat 2351.642 kb on - strandat 2351.642 kb on - strandat 2351.775 kb on + strand, within PfGW456L13_2150at 2351.776 kb on - strand, within PfGW456L13_2150at 2351.776 kb on - strand, within PfGW456L13_2150at 2352.052 kb on + strandat 2352.052 kb on + strandat 2352.053 kb on - strandat 2352.053 kb on - strandat 2352.228 kb on + strandat 2352.228 kb on + strandat 2352.228 kb on + strandat 2352.230 kb on + strandat 2352.230 kb on + strandat 2352.230 kb on + strandat 2352.230 kb on + strandat 2352.231 kb on - strandat 2352.231 kb on - strandat 2352.231 kb on - strandat 2352.231 kb on - strandat 2352.231 kb on - strandat 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strandat 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.408 kb on + strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.409 kb on - strand, within PfGW456L13_2152at 2352.549 kb on + strand, within PfGW456L13_2152at 2352.550 kb on - strand, within PfGW456L13_2152at 2352.552 kb on + strand, within PfGW456L13_2152at 2352.553 kb on - strand, within PfGW456L13_2152at 2352.624 kb on + strand, within PfGW456L13_2152at 2352.624 kb on + strand, within PfGW456L13_2152at 2352.624 kb on + strand, within PfGW456L13_2152at 2352.624 kb on + strand, within PfGW456L13_2152at 2352.624 kb on + strand, within PfGW456L13_2152at 2352.625 kb on - strand, within PfGW456L13_2152at 2352.625 kb on - strand, within PfGW456L13_2152at 2352.625 kb on - strand, within PfGW456L13_2152

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
2,350,714 + PfGW456L13_2148 0.55 +0.4
2,350,714 + PfGW456L13_2148 0.55 -1.0
2,350,714 + PfGW456L13_2148 0.55 -0.7
2,350,714 + PfGW456L13_2148 0.55 -0.5
2,350,715 - PfGW456L13_2148 0.55 -2.6
2,350,715 - PfGW456L13_2148 0.55 -0.2
2,350,715 - -1.1
2,350,715 - PfGW456L13_2148 0.55 +1.7
2,350,715 - PfGW456L13_2148 0.55 +0.7
2,350,715 - PfGW456L13_2148 0.55 +0.1
2,350,715 - PfGW456L13_2148 0.55 -0.1
2,350,715 - PfGW456L13_2148 0.55 +1.0
2,350,921 + PfGW456L13_2148 0.80 -0.8
2,350,921 + PfGW456L13_2148 0.80 -1.4
2,350,921 + PfGW456L13_2148 0.80 +0.7
2,350,921 + PfGW456L13_2148 0.80 -0.3
2,350,922 - PfGW456L13_2148 0.80 +0.2
2,350,922 - PfGW456L13_2148 0.80 -0.7
2,350,922 - PfGW456L13_2148 0.80 +0.0
2,350,922 - PfGW456L13_2148 0.80 -3.1
2,350,922 - PfGW456L13_2148 0.80 +0.3
2,350,922 - PfGW456L13_2148 0.80 -0.3
2,350,927 + PfGW456L13_2148 0.81 -2.0
2,350,927 + PfGW456L13_2148 0.81 +0.8
2,350,927 + PfGW456L13_2148 0.81 +0.6
2,350,927 + PfGW456L13_2148 0.81 +0.3
2,350,928 - PfGW456L13_2148 0.81 -0.3
2,350,928 - PfGW456L13_2148 0.81 +0.6
2,350,928 - PfGW456L13_2148 0.81 -0.2
2,350,928 - PfGW456L13_2148 0.81 -0.1
2,350,928 - PfGW456L13_2148 0.81 +1.0
2,350,928 - PfGW456L13_2148 0.81 -1.4
2,350,928 - PfGW456L13_2148 0.81 -0.6
2,350,928 - PfGW456L13_2148 0.81 -0.1
2,350,928 - PfGW456L13_2148 0.81 +0.8
2,351,020 + -0.7
2,351,152 + +0.8
2,351,152 + -0.1
2,351,152 + -0.1
2,351,152 + +0.9
2,351,152 + -0.5
2,351,152 + +1.6
2,351,152 + +0.7
2,351,152 + +0.4
2,351,153 - +0.3
2,351,153 - +1.9
2,351,153 - -1.4
2,351,153 - -2.4
2,351,153 - -0.3
2,351,153 - +0.5
2,351,153 - -2.9
2,351,156 + -0.5
2,351,156 + -0.4
2,351,156 + -0.5
2,351,156 + +1.2
2,351,157 - -1.0
2,351,157 - -0.1
2,351,157 - +0.9
2,351,157 - -0.7
2,351,157 - -0.4
2,351,157 - -0.8
2,351,157 - -0.1
2,351,157 - +0.1
2,351,230 + PfGW456L13_2149 0.25 +0.1
2,351,231 - PfGW456L13_2149 0.25 -0.8
2,351,309 + PfGW456L13_2149 0.49 -2.1
2,351,309 + PfGW456L13_2149 0.49 -0.3
2,351,309 + PfGW456L13_2149 0.49 +0.2
2,351,345 + PfGW456L13_2149 0.59 -0.5
2,351,345 + PfGW456L13_2149 0.59 +0.8
2,351,345 + PfGW456L13_2149 0.59 -0.0
2,351,345 + PfGW456L13_2149 0.59 +0.0
2,351,345 + PfGW456L13_2149 0.59 +1.0
2,351,345 + PfGW456L13_2149 0.59 +0.6
2,351,345 + PfGW456L13_2149 0.59 +0.3
2,351,345 + PfGW456L13_2149 0.59 +0.4
2,351,345 + PfGW456L13_2149 0.59 -1.2
2,351,345 + PfGW456L13_2149 0.59 +0.8
2,351,345 + PfGW456L13_2149 0.59 +0.4
2,351,345 + PfGW456L13_2149 0.59 +0.4
2,351,345 + PfGW456L13_2149 0.59 +0.5
2,351,345 + PfGW456L13_2149 0.59 -0.0
2,351,345 + PfGW456L13_2149 0.59 -0.1
2,351,346 - PfGW456L13_2149 0.60 +0.3
2,351,346 - PfGW456L13_2149 0.60 -0.2
2,351,346 - PfGW456L13_2149 0.60 -0.2
2,351,346 - PfGW456L13_2149 0.60 -2.4
2,351,346 - PfGW456L13_2149 0.60 -3.1
2,351,491 + -0.1
2,351,492 - -0.6
2,351,492 - +0.7
2,351,492 - +0.7
2,351,521 + +1.1
2,351,521 + +1.9
2,351,522 - -0.4
2,351,576 + +0.1
2,351,576 + +1.6
2,351,576 + +0.4
2,351,576 + +0.3
2,351,576 + -1.8
2,351,576 + +0.6
2,351,577 - -0.2
2,351,577 - -0.2
2,351,577 - -1.9
2,351,577 - +0.7
2,351,641 + -0.1
2,351,641 + -0.9
2,351,641 + +0.5
2,351,642 - -1.2
2,351,642 - -1.6
2,351,642 - -0.1
2,351,775 + PfGW456L13_2150 0.76 -0.8
2,351,776 - PfGW456L13_2150 0.76 -2.6
2,351,776 - PfGW456L13_2150 0.76 -0.3
2,352,052 + +0.1
2,352,052 + +0.8
2,352,053 - -1.0
2,352,053 - +0.6
2,352,228 + -0.2
2,352,228 + +0.3
2,352,228 + -0.9
2,352,230 + -0.8
2,352,230 + +0.8
2,352,230 + +0.3
2,352,230 + -0.4
2,352,231 - +0.0
2,352,231 - -0.5
2,352,231 - +1.0
2,352,231 - +0.2
2,352,231 - -0.2
2,352,408 + PfGW456L13_2152 0.13 +1.2
2,352,408 + PfGW456L13_2152 0.13 +0.4
2,352,408 + PfGW456L13_2152 0.13 -1.3
2,352,408 + PfGW456L13_2152 0.13 +0.1
2,352,408 + PfGW456L13_2152 0.13 +1.0
2,352,408 + PfGW456L13_2152 0.13 -0.6
2,352,408 + PfGW456L13_2152 0.13 +1.7
2,352,408 + PfGW456L13_2152 0.13 -0.1
2,352,408 + PfGW456L13_2152 0.13 +0.4
2,352,408 + PfGW456L13_2152 0.13 -2.9
2,352,408 + PfGW456L13_2152 0.13 -2.3
2,352,408 + PfGW456L13_2152 0.13 +0.8
2,352,408 + PfGW456L13_2152 0.13 +0.5
2,352,408 + PfGW456L13_2152 0.13 +0.9
2,352,408 + PfGW456L13_2152 0.13 +0.3
2,352,408 + PfGW456L13_2152 0.13 +0.1
2,352,408 + PfGW456L13_2152 0.13 -0.5
2,352,408 + PfGW456L13_2152 0.13 +0.1
2,352,408 + PfGW456L13_2152 0.13 -0.0
2,352,408 + PfGW456L13_2152 0.13 +0.5
2,352,408 + PfGW456L13_2152 0.13 -1.3
2,352,408 + -0.7
2,352,408 + PfGW456L13_2152 0.13 -1.0
2,352,408 + PfGW456L13_2152 0.13 +0.7
2,352,408 + PfGW456L13_2152 0.13 -0.1
2,352,408 + PfGW456L13_2152 0.13 -1.2
2,352,408 + PfGW456L13_2152 0.13 +0.1
2,352,408 + PfGW456L13_2152 0.13 -0.3
2,352,409 - PfGW456L13_2152 0.13 +0.3
2,352,409 - PfGW456L13_2152 0.13 -0.4
2,352,409 - PfGW456L13_2152 0.13 -0.0
2,352,409 - PfGW456L13_2152 0.13 +0.1
2,352,409 - PfGW456L13_2152 0.13 -0.7
2,352,409 - PfGW456L13_2152 0.13 -0.1
2,352,409 - PfGW456L13_2152 0.13 -1.4
2,352,409 - PfGW456L13_2152 0.13 -0.2
2,352,409 - PfGW456L13_2152 0.13 +0.5
2,352,409 - PfGW456L13_2152 0.13 +1.1
2,352,409 - PfGW456L13_2152 0.13 +1.6
2,352,409 - PfGW456L13_2152 0.13 +0.7
2,352,409 - PfGW456L13_2152 0.13 +0.5
2,352,409 - PfGW456L13_2152 0.13 +1.4
2,352,409 - PfGW456L13_2152 0.13 +0.3
2,352,409 - PfGW456L13_2152 0.13 +0.7
2,352,409 - PfGW456L13_2152 0.13 +0.6
2,352,409 - PfGW456L13_2152 0.13 -0.2
2,352,409 - PfGW456L13_2152 0.13 -0.2
2,352,409 - PfGW456L13_2152 0.13 +0.1
2,352,409 - PfGW456L13_2152 0.13 +0.4
2,352,409 - PfGW456L13_2152 0.13 +0.1
2,352,409 - PfGW456L13_2152 0.13 -1.1
2,352,409 - PfGW456L13_2152 0.13 +0.4
2,352,409 - PfGW456L13_2152 0.13 +0.6
2,352,409 - PfGW456L13_2152 0.13 -2.3
2,352,409 - PfGW456L13_2152 0.13 +0.5
2,352,409 - PfGW456L13_2152 0.13 -0.3
2,352,409 - PfGW456L13_2152 0.13 +1.4
2,352,409 - PfGW456L13_2152 0.13 +0.6
2,352,409 - PfGW456L13_2152 0.13 -0.6
2,352,409 - PfGW456L13_2152 0.13 -0.7
2,352,409 - PfGW456L13_2152 0.13 -0.7
2,352,409 - PfGW456L13_2152 0.13 +0.8
2,352,409 - PfGW456L13_2152 0.13 -0.9
2,352,409 - PfGW456L13_2152 0.13 +0.4
2,352,409 - PfGW456L13_2152 0.13 +0.0
2,352,549 + PfGW456L13_2152 0.25 -1.6
2,352,550 - PfGW456L13_2152 0.25 -3.3
2,352,552 + PfGW456L13_2152 0.25 +0.5
2,352,553 - PfGW456L13_2152 0.25 -1.0
2,352,624 + PfGW456L13_2152 0.31 -0.8
2,352,624 + PfGW456L13_2152 0.31 +0.6
2,352,624 + PfGW456L13_2152 0.31 -0.7
2,352,624 + PfGW456L13_2152 0.31 -1.0
2,352,624 + PfGW456L13_2152 0.31 -0.3
2,352,625 - PfGW456L13_2152 0.31 +0.1
2,352,625 - PfGW456L13_2152 0.31 -1.2
2,352,625 - PfGW456L13_2152 0.31 -1.4

Or see this region's nucleotide sequence