Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1789

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1788 and PfGW456L13_1789 are separated by 9 nucleotidesPfGW456L13_1789 and PfGW456L13_1790 are separated by 202 nucleotides PfGW456L13_1788 - Transcriptional regulator PobR, AraC family, at 1,969,682 to 1,970,578 _1788 PfGW456L13_1789 - FIG00954094: hypothetical protein, at 1,970,588 to 1,970,764 _1789 PfGW456L13_1790 - LysR-family transcriptional regulator clustered with PA0057, at 1,970,967 to 1,971,854 _1790 Position (kb) 1970 1971Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1969.621 kb on + strandat 1969.621 kb on + strandat 1969.621 kb on + strandat 1969.621 kb on + strandat 1969.621 kb on + strandat 1969.621 kb on + strandat 1969.621 kb on + strandat 1969.621 kb on + strandat 1969.621 kb on + strandat 1969.622 kb on - strandat 1969.622 kb on - strandat 1969.622 kb on - strandat 1969.622 kb on - strandat 1969.622 kb on - strandat 1969.622 kb on - strandat 1969.724 kb on + strandat 1969.725 kb on - strandat 1969.851 kb on + strand, within PfGW456L13_1788at 1969.851 kb on + strand, within PfGW456L13_1788at 1970.061 kb on - strand, within PfGW456L13_1788at 1970.121 kb on - strand, within PfGW456L13_1788at 1970.121 kb on - strand, within PfGW456L13_1788at 1970.121 kb on - strand, within PfGW456L13_1788at 1970.121 kb on - strand, within PfGW456L13_1788at 1970.246 kb on + strand, within PfGW456L13_1788at 1970.246 kb on + strand, within PfGW456L13_1788at 1970.246 kb on + strand, within PfGW456L13_1788at 1970.247 kb on - strand, within PfGW456L13_1788at 1970.247 kb on - strand, within PfGW456L13_1788at 1970.260 kb on + strand, within PfGW456L13_1788at 1970.260 kb on + strand, within PfGW456L13_1788at 1970.260 kb on + strand, within PfGW456L13_1788at 1970.260 kb on + strand, within PfGW456L13_1788at 1970.283 kb on - strand, within PfGW456L13_1788at 1970.433 kb on - strand, within PfGW456L13_1788at 1970.433 kb on - strand, within PfGW456L13_1788at 1970.450 kb on + strand, within PfGW456L13_1788at 1970.450 kb on + strand, within PfGW456L13_1788at 1970.450 kb on + strandat 1970.451 kb on - strand, within PfGW456L13_1788at 1970.451 kb on - strand, within PfGW456L13_1788at 1970.451 kb on - strand, within PfGW456L13_1788at 1970.700 kb on + strand, within PfGW456L13_1789at 1970.742 kb on + strand, within PfGW456L13_1789at 1970.742 kb on + strand, within PfGW456L13_1789at 1970.743 kb on - strand, within PfGW456L13_1789at 1970.785 kb on + strandat 1970.786 kb on - strandat 1970.795 kb on + strandat 1970.795 kb on + strandat 1970.798 kb on + strandat 1970.798 kb on + strandat 1970.798 kb on + strandat 1970.798 kb on + strandat 1970.799 kb on - strandat 1970.799 kb on - strandat 1970.799 kb on - strandat 1970.799 kb on - strandat 1970.810 kb on - strandat 1970.810 kb on - strandat 1970.828 kb on + strandat 1970.828 kb on + strandat 1970.968 kb on + strandat 1970.968 kb on + strandat 1970.968 kb on + strandat 1970.968 kb on + strandat 1970.969 kb on - strandat 1970.969 kb on - strandat 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.064 kb on + strand, within PfGW456L13_1790at 1971.065 kb on - strand, within PfGW456L13_1790at 1971.065 kb on - strand, within PfGW456L13_1790at 1971.065 kb on - strand, within PfGW456L13_1790at 1971.065 kb on - strand, within PfGW456L13_1790at 1971.065 kb on - strand, within PfGW456L13_1790at 1971.073 kb on + strand, within PfGW456L13_1790at 1971.073 kb on + strand, within PfGW456L13_1790at 1971.073 kb on + strand, within PfGW456L13_1790at 1971.074 kb on - strand, within PfGW456L13_1790at 1971.074 kb on - strand, within PfGW456L13_1790at 1971.074 kb on - strand, within PfGW456L13_1790at 1971.074 kb on - strand, within PfGW456L13_1790at 1971.138 kb on + strand, within PfGW456L13_1790at 1971.138 kb on + strand, within PfGW456L13_1790at 1971.139 kb on - strand, within PfGW456L13_1790at 1971.151 kb on + strand, within PfGW456L13_1790at 1971.151 kb on + strand, within PfGW456L13_1790at 1971.292 kb on + strand, within PfGW456L13_1790at 1971.362 kb on - strand, within PfGW456L13_1790at 1971.440 kb on + strand, within PfGW456L13_1790at 1971.532 kb on + strand, within PfGW456L13_1790at 1971.532 kb on + strand, within PfGW456L13_1790at 1971.532 kb on + strand, within PfGW456L13_1790at 1971.532 kb on + strand, within PfGW456L13_1790at 1971.532 kb on + strand, within PfGW456L13_1790at 1971.532 kb on + strand, within PfGW456L13_1790at 1971.532 kb on + strand, within PfGW456L13_1790at 1971.533 kb on - strand, within PfGW456L13_1790at 1971.533 kb on - strand, within PfGW456L13_1790at 1971.533 kb on - strand, within PfGW456L13_1790at 1971.533 kb on - strand, within PfGW456L13_1790at 1971.533 kb on - strand, within PfGW456L13_1790at 1971.533 kb on - strand, within PfGW456L13_1790

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,969,621 + -0.0
1,969,621 + +0.5
1,969,621 + -0.7
1,969,621 + -0.8
1,969,621 + +1.2
1,969,621 + +0.0
1,969,621 + -1.5
1,969,621 + -0.2
1,969,621 + +0.6
1,969,622 - -0.4
1,969,622 - -1.1
1,969,622 - +0.5
1,969,622 - -1.3
1,969,622 - -0.3
1,969,622 - +0.7
1,969,724 + -2.6
1,969,725 - -0.2
1,969,851 + PfGW456L13_1788 0.19 -0.8
1,969,851 + PfGW456L13_1788 0.19 -0.3
1,970,061 - PfGW456L13_1788 0.42 +0.7
1,970,121 - PfGW456L13_1788 0.49 +0.8
1,970,121 - PfGW456L13_1788 0.49 -0.6
1,970,121 - PfGW456L13_1788 0.49 +0.2
1,970,121 - PfGW456L13_1788 0.49 -0.2
1,970,246 + PfGW456L13_1788 0.63 +0.2
1,970,246 + PfGW456L13_1788 0.63 -0.6
1,970,246 + PfGW456L13_1788 0.63 -0.6
1,970,247 - PfGW456L13_1788 0.63 -0.0
1,970,247 - PfGW456L13_1788 0.63 -0.0
1,970,260 + PfGW456L13_1788 0.64 +0.5
1,970,260 + PfGW456L13_1788 0.64 +0.4
1,970,260 + PfGW456L13_1788 0.64 -1.1
1,970,260 + PfGW456L13_1788 0.64 -0.3
1,970,283 - PfGW456L13_1788 0.67 +0.4
1,970,433 - PfGW456L13_1788 0.84 +0.7
1,970,433 - PfGW456L13_1788 0.84 -1.0
1,970,450 + PfGW456L13_1788 0.86 -0.0
1,970,450 + PfGW456L13_1788 0.86 -0.7
1,970,450 + -1.0
1,970,451 - PfGW456L13_1788 0.86 +0.6
1,970,451 - PfGW456L13_1788 0.86 -0.1
1,970,451 - PfGW456L13_1788 0.86 -2.0
1,970,700 + PfGW456L13_1789 0.63 -0.6
1,970,742 + PfGW456L13_1789 0.87 -2.1
1,970,742 + PfGW456L13_1789 0.87 -0.7
1,970,743 - PfGW456L13_1789 0.88 -3.5
1,970,785 + +0.3
1,970,786 - -2.8
1,970,795 + +1.1
1,970,795 + +0.7
1,970,798 + +0.8
1,970,798 + +0.3
1,970,798 + +0.3
1,970,798 + -0.6
1,970,799 - +0.5
1,970,799 - -0.1
1,970,799 - +0.0
1,970,799 - -0.3
1,970,810 - +0.2
1,970,810 - -0.4
1,970,828 + +1.3
1,970,828 + +0.0
1,970,968 + -0.1
1,970,968 + -0.2
1,970,968 + +0.5
1,970,968 + -0.9
1,970,969 - +0.0
1,970,969 - +0.3
1,971,064 + PfGW456L13_1790 0.11 -0.1
1,971,064 + PfGW456L13_1790 0.11 +0.7
1,971,064 + PfGW456L13_1790 0.11 -0.4
1,971,064 + PfGW456L13_1790 0.11 -0.4
1,971,064 + PfGW456L13_1790 0.11 +0.1
1,971,064 + PfGW456L13_1790 0.11 +0.4
1,971,064 + PfGW456L13_1790 0.11 +0.6
1,971,064 + PfGW456L13_1790 0.11 -0.0
1,971,064 + PfGW456L13_1790 0.11 +1.0
1,971,064 + PfGW456L13_1790 0.11 -0.4
1,971,065 - PfGW456L13_1790 0.11 +0.2
1,971,065 - PfGW456L13_1790 0.11 +0.7
1,971,065 - PfGW456L13_1790 0.11 -0.3
1,971,065 - PfGW456L13_1790 0.11 +0.4
1,971,065 - PfGW456L13_1790 0.11 -1.1
1,971,073 + PfGW456L13_1790 0.12 +2.2
1,971,073 + PfGW456L13_1790 0.12 -0.3
1,971,073 + PfGW456L13_1790 0.12 -3.1
1,971,074 - PfGW456L13_1790 0.12 +0.6
1,971,074 - PfGW456L13_1790 0.12 -0.1
1,971,074 - PfGW456L13_1790 0.12 +1.5
1,971,074 - PfGW456L13_1790 0.12 -1.6
1,971,138 + PfGW456L13_1790 0.19 -1.7
1,971,138 + PfGW456L13_1790 0.19 -0.2
1,971,139 - PfGW456L13_1790 0.19 -1.6
1,971,151 + PfGW456L13_1790 0.21 +0.6
1,971,151 + PfGW456L13_1790 0.21 -0.4
1,971,292 + PfGW456L13_1790 0.37 -1.0
1,971,362 - PfGW456L13_1790 0.44 -0.3
1,971,440 + PfGW456L13_1790 0.53 -0.4
1,971,532 + PfGW456L13_1790 0.64 +0.7
1,971,532 + PfGW456L13_1790 0.64 -0.0
1,971,532 + PfGW456L13_1790 0.64 +0.6
1,971,532 + PfGW456L13_1790 0.64 -0.1
1,971,532 + PfGW456L13_1790 0.64 -0.5
1,971,532 + PfGW456L13_1790 0.64 +0.6
1,971,532 + PfGW456L13_1790 0.64 +0.8
1,971,533 - PfGW456L13_1790 0.64 +0.5
1,971,533 - PfGW456L13_1790 0.64 +1.1
1,971,533 - PfGW456L13_1790 0.64 -0.5
1,971,533 - PfGW456L13_1790 0.64 -0.5
1,971,533 - PfGW456L13_1790 0.64 +0.7
1,971,533 - PfGW456L13_1790 0.64 -0.2

Or see this region's nucleotide sequence