Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_138 and PfGW456L13_139 are separated by 122 nucleotides PfGW456L13_139 and PfGW456L13_140 are separated by 19 nucleotides PfGW456L13_140 and PfGW456L13_141 are separated by 36 nucleotides PfGW456L13_141 and PfGW456L13_142 are separated by 28 nucleotides
PfGW456L13_138 - Replicative DNA helicase (EC 3.6.1.-), at 159,395 to 160,792
_138
PfGW456L13_139 - LSU ribosomal protein L9p, at 160,915 to 161,361
_139
PfGW456L13_140 - FIG003573: hypothetical protein, at 161,381 to 162,274
_140
PfGW456L13_141 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 162,311 to 162,541
_141
PfGW456L13_142 - SSU ribosomal protein S6p, at 162,570 to 162,992
_142
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 160.814 kb on - strand at 160.814 kb on - strand at 160.814 kb on - strand at 160.814 kb on - strand at 160.991 kb on - strand, within PfGW456L13_139 at 161.376 kb on - strand at 161.479 kb on - strand, within PfGW456L13_140 at 161.479 kb on - strand, within PfGW456L13_140 at 161.479 kb on - strand, within PfGW456L13_140 at 161.479 kb on - strand, within PfGW456L13_140 at 161.512 kb on - strand, within PfGW456L13_140 at 161.512 kb on - strand, within PfGW456L13_140 at 161.512 kb on - strand, within PfGW456L13_140 at 161.512 kb on - strand, within PfGW456L13_140 at 163.142 kb on + strand at 163.143 kb on - strand at 163.154 kb on - strand at 163.182 kb on + strand at 163.183 kb on - strand at 163.237 kb on + strand at 163.237 kb on + strand at 163.237 kb on + strand at 163.238 kb on - strand at 163.238 kb on - strand at 163.250 kb on + strand at 163.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 160,814 - +0.3 160,814 - -0.4 160,814 - -0.4 160,814 - +1.0 160,991 - PfGW456L13_139 0.17 -0.3 161,376 - -2.9 161,479 - PfGW456L13_140 0.11 -2.5 161,479 - PfGW456L13_140 0.11 -1.5 161,479 - PfGW456L13_140 0.11 -1.8 161,479 - PfGW456L13_140 0.11 -0.2 161,512 - PfGW456L13_140 0.15 +1.1 161,512 - PfGW456L13_140 0.15 -1.1 161,512 - PfGW456L13_140 0.15 -2.2 161,512 - PfGW456L13_140 0.15 -1.1 163,142 + +1.0 163,143 - -0.3 163,154 - -0.4 163,182 + -2.1 163,183 - -0.0 163,237 + -0.1 163,237 + +0.8 163,237 + +0.7 163,238 - -3.6 163,238 - +0.5 163,250 + -0.3 163,250 + +1.0
Or see this region's nucleotide sequence