Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25025

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
5,600,746	-		PFLU_RS25020	0.18	+0.6
5,600,780	+		PFLU_RS25020	0.22	+0.4
5,600,780	+		PFLU_RS25020	0.22	-0.3
5,600,781	-		PFLU_RS25020	0.22	+0.3
5,600,781	-		PFLU_RS25020	0.22	+0.8
5,600,972	+		PFLU_RS25020	0.43	+0.3
5,601,022	-		PFLU_RS25020	0.49	-0.3
5,601,079	+		PFLU_RS25020	0.55	-0.0
5,601,083	+		PFLU_RS25020	0.56	+0.1
5,601,083	+		PFLU_RS25020	0.56	+0.3
5,601,083	+		PFLU_RS25020	0.56	+0.5
5,601,083	+		PFLU_RS25020	0.56	-0.5
5,601,083	+		PFLU_RS25020	0.56	+0.4
5,601,084	-		PFLU_RS25020	0.56	+0.7
5,601,084	-		PFLU_RS25020	0.56	+0.9
5,601,084	-		PFLU_RS25020	0.56	-1.0
5,601,084	-		PFLU_RS25020	0.56	+0.3
5,601,084	-		PFLU_RS25020	0.56	+0.3
5,601,084	-		PFLU_RS25020	0.56	-0.7
5,601,084	-		PFLU_RS25020	0.56	+1.4
5,601,084	-		PFLU_RS25020	0.56	+0.6
5,601,084	-		PFLU_RS25020	0.56	-0.4
5,601,113	+		PFLU_RS25020	0.59	-0.2
5,601,114	-		PFLU_RS25020	0.59	-0.1
5,601,197	+		PFLU_RS25020	0.68	+0.2
5,601,197	+		PFLU_RS25020	0.68	+0.2
5,601,197	+		PFLU_RS25020	0.68	+0.3
5,601,198	-		PFLU_RS25020	0.68	+0.3
5,601,198	-		PFLU_RS25020	0.68	+0.7
5,601,198	-		PFLU_RS25020	0.68	-0.2
5,601,248	+		PFLU_RS25020	0.74	-0.1
5,601,248	+		PFLU_RS25020	0.74	-0.0
5,601,248	+		PFLU_RS25020	0.74	-0.1
5,601,249	-		PFLU_RS25020	0.74	+0.4
5,601,249	-		PFLU_RS25020	0.74	-0.8
5,601,249	-		PFLU_RS25020	0.74	-0.4
5,601,258	+		PFLU_RS25020	0.75	+2.1
5,601,347	+		PFLU_RS25020	0.85	+0.4
5,601,347	+		PFLU_RS25020	0.85	+0.8
5,601,347	+		PFLU_RS25020	0.85	+0.2
5,601,347	+		PFLU_RS25020	0.85	+0.6
5,601,347	+		PFLU_RS25020	0.85	-1.5
5,601,347	+		PFLU_RS25020	0.85	-0.7
5,601,347	+		PFLU_RS25020	0.85	+1.0
5,601,348	-		PFLU_RS25020	0.85	-1.6
5,601,348	-		PFLU_RS25020	0.85	+1.0
5,601,370	+		PFLU_RS25020	0.88	+1.0
5,601,370	+		PFLU_RS25020	0.88	+0.2
5,601,498	+				+0.8
5,601,498	+				+1.2
5,601,498	+				-0.0
5,601,499	-				-0.0
5,601,506	+				+0.3
5,601,507	-				+1.0
5,601,569	+				+0.8
5,601,573	+				+0.7
5,601,574	-				-0.4
5,601,577	-				+0.7
5,601,577	-				+0.0
5,601,577	-				+1.1
5,601,629	+				+1.0
5,601,653	+				-0.5
5,601,653	+				+0.4
5,601,653	+				-1.3
5,601,653	+				+0.0
5,601,654	-				+0.8
5,601,654	-				+0.2
5,601,654	-				-0.3
5,601,685	+				+0.9
5,601,815	-		PFLU_RS25025	0.35	+0.6
5,601,815	-		PFLU_RS25025	0.35	-2.0
5,601,815	-		PFLU_RS25025	0.35	-0.8
5,601,815	-		PFLU_RS25025	0.35	-0.2
5,602,008	+				+0.5
5,602,106	+		PFLU_RS25030	0.11	-0.4
5,602,106	+		PFLU_RS25030	0.11	-0.4
5,602,192	+		PFLU_RS25030	0.24	+0.5
5,602,281	+		PFLU_RS25030	0.38	+0.3
5,602,281	+		PFLU_RS25030	0.38	+0.0
5,602,281	+		PFLU_RS25030	0.38	+0.2
5,602,281	+		PFLU_RS25030	0.38	+1.6
5,602,281	+		PFLU_RS25030	0.38	+0.7
5,602,281	+		PFLU_RS25030	0.38	-0.5
5,602,281	+		PFLU_RS25030	0.38	+1.4
5,602,281	+		PFLU_RS25030	0.38	+0.1
5,602,281	+		PFLU_RS25030	0.38	+0.0
5,602,281	+		PFLU_RS25030	0.38	+1.0
5,602,281	+		PFLU_RS25030	0.38	-0.4
5,602,281	+		PFLU_RS25030	0.38	+0.4
5,602,282	-		PFLU_RS25030	0.39	+1.1
5,602,282	-		PFLU_RS25030	0.39	-0.4
5,602,282	-		PFLU_RS25030	0.39	-0.4
5,602,282	-		PFLU_RS25030	0.39	-2.3
5,602,282	-		PFLU_RS25030	0.39	+0.6
5,602,282	-		PFLU_RS25030	0.39	+0.3
5,602,282	-		PFLU_RS25030	0.39	-0.9
5,602,282	-		PFLU_RS25030	0.39	+0.4
5,602,282	-		PFLU_RS25030	0.39	+1.1
5,602,282	-		PFLU_RS25030	0.39	-0.4
5,602,416	+		PFLU_RS25030	0.60	+1.3
5,602,416	+		PFLU_RS25030	0.60	+0.5
5,602,416	+		PFLU_RS25030	0.60	-0.0
5,602,416	+		PFLU_RS25030	0.60	-1.1
5,602,416	+		PFLU_RS25030	0.60	-1.3
5,602,416	+		PFLU_RS25030	0.60	-0.6
5,602,416	+		PFLU_RS25030	0.60	+1.1
5,602,416	+		PFLU_RS25030	0.60	-0.6
5,602,416	+		PFLU_RS25030	0.60	-1.1
5,602,417	-		PFLU_RS25030	0.60	-0.2
5,602,417	-		PFLU_RS25030	0.60	-0.8
5,602,417	-		PFLU_RS25030	0.60	-0.5
5,602,425	+		PFLU_RS25030	0.61	+0.6
5,602,425	+		PFLU_RS25030	0.61	+0.4
5,602,426	-		PFLU_RS25030	0.61	-0.7
5,602,456	-		PFLU_RS25030	0.66	-0.1
5,602,456	-		PFLU_RS25030	0.66	+0.1
5,602,512	+		PFLU_RS25030	0.75	-0.3
5,602,512	+		PFLU_RS25030	0.75	-1.5
5,602,512	+		PFLU_RS25030	0.75	+0.2
5,602,512	+		PFLU_RS25030	0.75	-0.6
5,602,512	+		PFLU_RS25030	0.75	+0.4
5,602,512	+		PFLU_RS25030	0.75	-1.5
5,602,513	-		PFLU_RS25030	0.75	+1.0
5,602,513	-		PFLU_RS25030	0.75	-0.1
5,602,593	+		PFLU_RS25030	0.87	+1.0
5,602,594	-		PFLU_RS25030	0.88	+0.1
5,602,594	-		PFLU_RS25030	0.88	-0.0
5,602,644	+				-1.9
5,602,645	-				-0.2
5,602,645	-				+0.0
5,602,693	-				-1.1
5,602,726	+				+0.5
5,602,726	+				+0.0
5,602,726	+				+0.7
5,602,726	+				+0.9
5,602,727	-				-1.2
5,602,727	-				-0.5
5,602,727	-				+0.9
5,602,727	-				-1.2
5,602,767	+				-1.9
5,602,768	-				-0.3
5,602,772	-				+0.3
5,602,795	+				-0.3
5,602,796	-				+0.5
5,602,796	-				+0.9
5,602,882	-		PFLU_RS25035	0.14	+0.5
5,602,935	+		PFLU_RS25035	0.28	-0.4
5,602,935	+		PFLU_RS25035	0.28	+0.4
5,602,936	-		PFLU_RS25035	0.28	+1.5
5,602,936	-		PFLU_RS25035	0.28	+0.4
5,602,936	-		PFLU_RS25035	0.28	+1.4
5,602,936	-		PFLU_RS25035	0.28	+0.4
5,602,964	+		PFLU_RS25035	0.36	+0.2
5,602,980	-		PFLU_RS25035	0.40	+0.7
5,603,024	+		PFLU_RS25035	0.52	+0.6
5,603,024	+		PFLU_RS25035	0.52	+0.3
5,603,024	+		PFLU_RS25035	0.52	+1.1
5,603,024	+		PFLU_RS25035	0.52	+1.8
5,603,024	+		PFLU_RS25035	0.52	-1.9
5,603,024	+		PFLU_RS25035	0.52	+0.1
5,603,024	+		PFLU_RS25035	0.52	+0.2
5,603,024	+		PFLU_RS25035	0.52	-0.3
5,603,024	+		PFLU_RS25035	0.52	+0.7
5,603,025	-		PFLU_RS25035	0.52	+0.9
5,603,025	-		PFLU_RS25035	0.52	+0.4
5,603,025	-		PFLU_RS25035	0.52	+1.3