Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23610

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
5,294,432	+		PFLU_RS23600	0.32	-1.4
5,294,432	+		PFLU_RS23600	0.32	-1.9
5,294,432	+		PFLU_RS23600	0.32	+0.1
5,294,432	+		PFLU_RS23600	0.32	-0.3
5,294,432	+		PFLU_RS23600	0.32	-2.5
5,294,432	+		PFLU_RS23600	0.32	+1.5
5,294,433	-		PFLU_RS23600	0.33	-0.8
5,294,433	-		PFLU_RS23600	0.33	+0.1
5,294,433	-		PFLU_RS23600	0.33	-0.5
5,294,442	+		PFLU_RS23600	0.37	+0.1
5,294,442	+		PFLU_RS23600	0.37	+1.0
5,294,443	-		PFLU_RS23600	0.37	+1.0
5,294,443	-		PFLU_RS23600	0.37	-0.5
5,294,443	-		PFLU_RS23600	0.37	-1.5
5,294,443	-		PFLU_RS23600	0.37	-0.4
5,294,443	-		PFLU_RS23600	0.37	-0.1
5,294,443	-		PFLU_RS23600	0.37	+0.2
5,294,443	-		PFLU_RS23600	0.37	-0.8
5,294,443	-		PFLU_RS23600	0.37	+1.6
5,294,443	-		PFLU_RS23600	0.37	-1.3
5,294,519	+		PFLU_RS23600	0.70	-0.1
5,294,519	+		PFLU_RS23600	0.70	-0.4
5,294,520	-		PFLU_RS23600	0.71	-0.4
5,294,520	-		PFLU_RS23600	0.71	-0.8
5,294,520	-		PFLU_RS23600	0.71	-1.5
5,294,520	-		PFLU_RS23600	0.71	-0.9
5,294,551	-		PFLU_RS23600	0.84	+0.9
5,294,699	-				-0.1
5,294,722	-				+0.2
5,294,739	+				+0.4
5,294,746	+				-0.7
5,294,749	+				-1.3
5,294,750	-				-0.7
5,294,768	+				-0.9
5,294,880	+		PFLU_RS23605	0.16	-0.9
5,294,913	+		PFLU_RS23605	0.24	+0.7
5,294,914	-		PFLU_RS23605	0.24	+0.4
5,294,921	+		PFLU_RS23605	0.26	-0.0
5,294,922	-		PFLU_RS23605	0.26	+0.8
5,294,922	-		PFLU_RS23605	0.26	+1.4
5,294,926	-		PFLU_RS23605	0.27	+0.0
5,294,945	+		PFLU_RS23605	0.31	-0.4
5,294,945	+		PFLU_RS23605	0.31	+0.6
5,294,946	-		PFLU_RS23605	0.31	+0.6
5,294,967	+		PFLU_RS23605	0.36	+0.6
5,294,967	+		PFLU_RS23605	0.36	+1.3
5,294,968	-		PFLU_RS23605	0.37	+0.4
5,295,001	+		PFLU_RS23605	0.44	-2.2
5,295,001	+		PFLU_RS23605	0.44	+0.7
5,295,001	+		PFLU_RS23605	0.44	+1.0
5,295,001	+		PFLU_RS23605	0.44	-0.6
5,295,001	+		PFLU_RS23605	0.44	+0.8
5,295,002	-		PFLU_RS23605	0.45	-0.7
5,295,002	-		PFLU_RS23605	0.45	+0.3
5,295,002	-		PFLU_RS23605	0.45	+0.2
5,295,003	+		PFLU_RS23605	0.45	-0.5
5,295,041	+		PFLU_RS23605	0.54	+1.8
5,295,041	+		PFLU_RS23605	0.54	-0.1
5,295,042	-		PFLU_RS23605	0.54	+0.4
5,295,053	+		PFLU_RS23605	0.57	+1.0
5,295,053	+		PFLU_RS23605	0.57	-1.6
5,295,053	+		PFLU_RS23605	0.57	-0.0
5,295,085	-		PFLU_RS23605	0.64	-1.9
5,295,124	+		PFLU_RS23605	0.73	+0.7
5,295,125	-		PFLU_RS23605	0.73	-0.1
5,295,126	+		PFLU_RS23605	0.74	-1.8
5,295,127	-		PFLU_RS23605	0.74	+0.1
5,295,147	-		PFLU_RS23605	0.79	+1.4
5,295,280	-				+0.5
5,295,306	+				+0.8
5,295,306	+				+0.6
5,295,306	+				-1.3
5,295,334	+				-0.1
5,295,334	+				+1.1
5,295,334	+				+1.8
5,295,335	-				+0.6
5,295,335	-				+0.3
5,295,336	+				+0.3
5,295,336	+				-1.5
5,295,336	+				-1.2
5,295,336	+				+0.3
5,295,336	+				+1.7
5,295,336	+				+0.3
5,295,336	+				+1.2
5,295,336	+				-0.1
5,295,337	-				+1.3
5,295,337	-				+2.1
5,295,337	-				+0.3
5,295,337	-				+0.2
5,295,337	-				+0.2
5,295,337	-				-2.0
5,295,337	-				-0.9
5,295,337	-				-0.4
5,295,337	-				+0.2
5,295,337	-				-0.8
5,295,337	-				+0.4
5,295,350	+				+0.4
5,295,350	+				-1.4
5,295,351	-				+0.7
5,295,446	-				+0.5
5,295,446	-				+0.3
5,295,446	-				-0.6
5,295,478	-		PFLU_RS23610	0.14	-0.2
5,295,478	-		PFLU_RS23610	0.14	-0.5
5,295,688	+		PFLU_RS23610	0.47	-1.0
5,295,689	-		PFLU_RS23610	0.47	+0.3
5,295,852	+		PFLU_RS23610	0.73	+1.6
5,295,852	+		PFLU_RS23610	0.73	+0.6
5,295,852	+		PFLU_RS23610	0.73	+1.1
5,295,852	+		PFLU_RS23610	0.73	-2.4
5,295,852	+		PFLU_RS23610	0.73	+0.6
5,295,852	+		PFLU_RS23610	0.73	+0.2
5,295,852	+		PFLU_RS23610	0.73	+1.4
5,295,852	+		PFLU_RS23610	0.73	+0.6
5,295,853	-		PFLU_RS23610	0.73	-1.7
5,295,853	-		PFLU_RS23610	0.73	+0.2
5,295,853	-		PFLU_RS23610	0.73	-2.4
5,295,853	-		PFLU_RS23610	0.73	+0.2
5,295,853	-		PFLU_RS23610	0.73	+0.6
5,295,960	+				+0.3
5,295,960	+				+0.5
5,295,960	+				+0.0
5,295,960	+				+0.2
5,295,960	+				+0.2
5,295,961	-				-0.1
5,295,961	-				+2.5
5,295,961	-				+0.3
5,295,963	+				-0.3
5,295,963	+				-0.3
5,295,963	+				-1.7
5,295,963	+				-0.7
5,295,963	+				+1.2
5,295,963	+				-0.1
5,295,963	+				-0.1
5,295,963	+				-0.1
5,295,964	-				+0.6
5,295,964	-				+2.2
5,295,964	-				-0.1
5,295,964	-				-0.5
5,295,964	-				+0.8
5,296,020	+				+0.0
5,296,020	+				-1.8
5,296,020	+				-0.1
5,296,021	-				-1.5
5,296,021	-				-0.5
5,296,021	-				-0.1
5,296,021	-				+1.1
5,296,054	+				+0.1
5,296,054	+				+0.2
5,296,054	+				+0.0
5,296,054	+				-0.2
5,296,055	-				+0.1
5,296,055	-				-2.2
5,296,055	-				-0.1
5,296,055	-				+1.3
5,296,055	-				+0.3
5,296,055	-				-1.4
5,296,055	-				-0.8
5,296,314	+		PFLU_RS23615	0.37	+0.0
5,296,314	+		PFLU_RS23615	0.37	+0.2
5,296,314	+		PFLU_RS23615	0.37	+1.8
5,296,314	+		PFLU_RS23615	0.37	-1.2
5,296,314	+		PFLU_RS23615	0.37	+0.3
5,296,314	+		PFLU_RS23615	0.37	-0.9
5,296,314	+		PFLU_RS23615	0.37	+2.9
5,296,314	+		PFLU_RS23615	0.37	-0.9
5,296,314	+		PFLU_RS23615	0.37	+1.1
5,296,314	+		PFLU_RS23615	0.37	+1.2
5,296,314	+		PFLU_RS23615	0.37	+0.4
5,296,315	-		PFLU_RS23615	0.38	-0.2
5,296,315	-		PFLU_RS23615	0.38	-1.0
5,296,315	-		PFLU_RS23615	0.38	-0.6
5,296,315	-		PFLU_RS23615	0.38	+1.2
5,296,345	+		PFLU_RS23615	0.42	+0.5
5,296,358	-		PFLU_RS23615	0.43	-0.4
5,296,358	-		PFLU_RS23615	0.43	-2.1
5,296,389	+		PFLU_RS23615	0.48	+0.4
5,296,482	+		PFLU_RS23615	0.60	-0.4
5,296,485	+		PFLU_RS23615	0.61	+1.0
5,296,485	+		PFLU_RS23615	0.61	-0.6
5,296,485	+		PFLU_RS23615	0.61	+0.3
5,296,485	+		PFLU_RS23615	0.61	-1.1
5,296,485	+		PFLU_RS23615	0.61	-0.6
5,296,486	-		PFLU_RS23615	0.61	+0.1
5,296,486	-		PFLU_RS23615	0.61	+1.0
5,296,486	-		PFLU_RS23615	0.61	-1.3
5,296,664	+		PFLU_RS23615	0.85	+0.4
5,296,664	+		PFLU_RS23615	0.85	-1.3
5,296,664	+		PFLU_RS23615	0.85	+0.6
5,296,664	+		PFLU_RS23615	0.85	+0.0
5,296,664	+		PFLU_RS23615	0.85	+1.8
5,296,664	+		PFLU_RS23615	0.85	+0.6
5,296,664	+		PFLU_RS23615	0.85	-1.9
5,296,665	-		PFLU_RS23615	0.85	+2.2
5,296,665	-		PFLU_RS23615	0.85	-0.2
5,296,665	-		PFLU_RS23615	0.85	-0.4
5,296,665	-		PFLU_RS23615	0.85	+0.7
5,296,665	-		PFLU_RS23615	0.85	-1.4
5,296,722	+				+1.8
5,296,770	+				-0.6
5,296,770	+				-0.7
5,296,771	-				+0.3
5,296,771	-				-2.2
5,296,771	-				+1.6
5,296,771	-				-0.1
5,296,771	-				+0.4
5,296,771	-				+1.2
5,296,771	-				+0.2
5,296,801	+				+0.3
5,296,871	-				+1.6
5,296,922	+				+0.4
5,296,922	+				+0.7
5,296,922	+				+0.4
5,296,922	+				+0.5
5,296,922	+				-0.1
5,296,922	+				+2.0
5,296,922	+				+0.1
5,296,923	-				+0.2
5,296,923	-				+0.9
5,296,923	-				-0.2
5,296,923	-				-1.8
5,296,923	-				-0.1
5,296,923	-				+0.3
5,296,923	-				+1.2
5,296,923	-				+0.8
5,296,923	-				+0.5
5,296,923	-				+0.6
5,296,943	+		PFLU_RS23620	0.11	+0.3
5,296,943	+		PFLU_RS23620	0.11	+0.8
5,296,943	+		PFLU_RS23620	0.11	-0.3
5,296,943	+		PFLU_RS23620	0.11	-0.7
5,296,944	-		PFLU_RS23620	0.11	+0.3
5,296,944	-		PFLU_RS23620	0.11	-0.7
5,296,944	-		PFLU_RS23620	0.11	+0.8
5,296,944	-		PFLU_RS23620	0.11	+0.3
5,296,944	-		PFLU_RS23620	0.11	+0.6
5,296,944	-		PFLU_RS23620	0.11	-1.4