Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS21535

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,855,621	+		PFLU_RS31750	0.61	-0.8
4,855,621	+		PFLU_RS31750	0.61	+0.0
4,855,621	+		PFLU_RS31750	0.61	+0.2
4,855,621	+		PFLU_RS31750	0.61	-1.0
4,855,621	+		PFLU_RS31750	0.61	-0.7
4,855,621	+		PFLU_RS31750	0.61	-0.2
4,855,621	+		PFLU_RS31750	0.61	+0.4
4,855,621	+		PFLU_RS31750	0.61	-0.8
4,855,622	-		PFLU_RS31750	0.62	+0.7
4,855,622	-		PFLU_RS31750	0.62	-0.3
4,855,622	-		PFLU_RS31750	0.62	-1.3
4,855,622	-		PFLU_RS31750	0.62	-0.2
4,855,622	-		PFLU_RS31750	0.62	-0.1
4,855,622	-		PFLU_RS31750	0.62	+1.1
4,855,622	-		PFLU_RS31750	0.62	-0.1
4,855,622	-		PFLU_RS31750	0.62	+1.1
4,855,766	+		PFLU_RS21530	0.18	-1.1
4,855,766	+		PFLU_RS21530	0.18	+0.9
4,855,766	+		PFLU_RS21530	0.18	+0.8
4,855,766	+		PFLU_RS21530	0.18	-2.3
4,855,766	+		PFLU_RS21530	0.18	-0.2
4,855,767	-		PFLU_RS21530	0.18	+0.6
4,855,767	-		PFLU_RS21530	0.18	+0.8
4,855,767	-		PFLU_RS21530	0.18	-0.2
4,855,767	-		PFLU_RS21530	0.18	+1.5
4,855,767	-		PFLU_RS21530	0.18	-0.5
4,855,767	-		PFLU_RS21530	0.18	+0.1
4,855,767	-		PFLU_RS21530	0.18	+0.1
4,855,827	+		PFLU_RS21530	0.25	-0.5
4,855,827	+		PFLU_RS21530	0.25	-1.4
4,855,827	+		PFLU_RS21530	0.25	-0.0
4,855,828	-		PFLU_RS21530	0.25	+0.6
4,855,828	-		PFLU_RS21530	0.25	-0.8
4,855,828	-		PFLU_RS21530	0.25	+0.1
4,855,828	-		PFLU_RS21530	0.25	+0.0
4,855,841	+		PFLU_RS21530	0.27	+1.0
4,855,842	-		PFLU_RS21530	0.27	-1.8
4,855,842	-		PFLU_RS21530	0.27	+1.5
4,855,910	+		PFLU_RS21530	0.36	+1.0
4,855,910	+		PFLU_RS21530	0.36	+0.1
4,855,910	+		PFLU_RS21530	0.36	-2.6
4,855,910	+		PFLU_RS21530	0.36	+1.0
4,855,911	-		PFLU_RS21530	0.36	-1.1
4,855,911	-		PFLU_RS21530	0.36	-1.6
4,855,911	-		PFLU_RS21530	0.36	+1.3
4,855,911	-		PFLU_RS21530	0.36	-2.2
4,855,943	+		PFLU_RS21530	0.40	-0.7
4,855,943	+		PFLU_RS21530	0.40	-0.1
4,855,943	+		PFLU_RS21530	0.40	+0.5
4,855,943	+		PFLU_RS21530	0.40	-0.5
4,855,943	+		PFLU_RS21530	0.40	-0.3
4,855,943	+		PFLU_RS21530	0.40	-1.4
4,855,943	+		PFLU_RS21530	0.40	-0.1
4,855,943	+		PFLU_RS21530	0.40	-1.3
4,855,943	+		PFLU_RS21530	0.40	-1.0
4,855,944	-		PFLU_RS21530	0.40	-1.3
4,855,944	-		PFLU_RS21530	0.40	+0.1
4,855,944	-		PFLU_RS21530	0.40	+0.3
4,855,944	-		PFLU_RS21530	0.40	+0.8
4,855,944	-		PFLU_RS21530	0.40	-1.0
4,855,944	-		PFLU_RS21530	0.40	+1.4
4,855,944	-		PFLU_RS21530	0.40	+0.1
4,855,944	-		PFLU_RS21530	0.40	+0.1
4,855,944	-		PFLU_RS21530	0.40	-2.5
4,855,944	-		PFLU_RS21530	0.40	+1.0
4,855,944	-		PFLU_RS21530	0.40	-2.3
4,855,976	+		PFLU_RS21530	0.44	+0.3
4,855,976	+		PFLU_RS21530	0.44	-0.3
4,855,977	-		PFLU_RS21530	0.44	-0.7
4,855,977	-		PFLU_RS21530	0.44	-0.6
4,856,028	-		PFLU_RS21530	0.51	+1.5
4,856,028	-		PFLU_RS21530	0.51	-1.2
4,856,028	-		PFLU_RS21530	0.51	-0.1
4,856,142	+		PFLU_RS21530	0.65	+0.8
4,856,216	+		PFLU_RS21530	0.75	-0.8
4,856,297	+		PFLU_RS21530	0.85	-0.7
4,856,297	+		PFLU_RS21530	0.85	+0.5
4,856,297	+		PFLU_RS21530	0.85	-0.7
4,856,382	+				+0.1
4,856,382	+				+0.8
4,856,382	+				-0.3
4,856,383	-				-0.2
4,856,383	-				-0.5
4,856,383	-				-2.4
4,856,383	-				+0.9
4,856,383	-				-0.9
4,856,442	-				-0.4
4,856,455	+				-0.7
4,856,456	-				-0.1
4,856,456	-				-0.3
4,856,496	+				+0.0
4,856,496	+				+0.3
4,856,497	-				+0.3
4,856,497	-				+1.2
4,856,499	+				+0.0
4,856,500	-				+1.3
4,856,652	+		PFLU_RS21535	0.23	+0.7
4,856,652	+		PFLU_RS21535	0.23	+0.2
4,856,652	+		PFLU_RS21535	0.23	+0.4
4,856,653	-		PFLU_RS21535	0.23	+0.7
4,856,653	-		PFLU_RS21535	0.23	+1.4
4,856,653	-		PFLU_RS21535	0.23	+0.2
4,856,679	-		PFLU_RS21535	0.27	-0.2
4,856,679	-		PFLU_RS21535	0.27	-0.8
4,856,679	-		PFLU_RS21535	0.27	+0.4
4,856,679	-		PFLU_RS21535	0.27	+1.2
4,856,679	-		PFLU_RS21535	0.27	-0.5
4,856,700	+		PFLU_RS21535	0.30	+0.1
4,856,700	+		PFLU_RS21535	0.30	+1.0
4,856,700	+		PFLU_RS21535	0.30	+0.1
4,856,700	+		PFLU_RS21535	0.30	+0.7
4,856,700	+		PFLU_RS21535	0.30	+1.5
4,856,701	-		PFLU_RS21535	0.31	+1.0
4,856,701	-		PFLU_RS21535	0.31	-0.1
4,856,701	-		PFLU_RS21535	0.31	+1.6
4,856,701	-		PFLU_RS21535	0.31	-0.2
4,856,701	-		PFLU_RS21535	0.31	+0.2
4,856,701	-		PFLU_RS21535	0.31	-0.6
4,856,701	-		PFLU_RS21535	0.31	+0.7
4,856,701	-		PFLU_RS21535	0.31	+0.1
4,856,701	-		PFLU_RS21535	0.31	-0.3
4,856,701	-		PFLU_RS21535	0.31	-1.3
4,856,761	-		PFLU_RS21535	0.40	-2.5
4,856,761	-		PFLU_RS21535	0.40	+1.2
4,856,889	+		PFLU_RS21535	0.61	-0.8
4,856,889	+		PFLU_RS21535	0.61	+0.0
4,856,889	+		PFLU_RS21535	0.61	-0.5
4,856,889	+		PFLU_RS21535	0.61	+0.9
4,856,890	-		PFLU_RS21535	0.61	+0.7
4,856,890	-		PFLU_RS21535	0.61	-0.1
4,856,890	-		PFLU_RS21535	0.61	+1.3
4,856,890	-		PFLU_RS21535	0.61	-1.4
4,857,146	+				-0.2
4,857,147	-				+0.8
4,857,147	-				+0.6
4,857,176	-				+0.6
4,857,381	-				-1.5
4,857,381	-				+1.2
4,857,396	-				+0.2
4,857,396	-				+0.0
4,857,458	+				+0.5
4,857,458	+				+0.0
4,857,484	+		PFLU_RS21540	0.11	+1.9
4,857,484	+		PFLU_RS21540	0.11	+1.6
4,857,485	-		PFLU_RS21540	0.11	+1.1
4,857,485	-		PFLU_RS21540	0.11	-0.0
4,857,722	+		PFLU_RS21540	0.24	-0.3
4,857,723	-		PFLU_RS21540	0.25	+0.8
4,857,851	+		PFLU_RS21540	0.32	+1.6
4,857,852	-		PFLU_RS21540	0.32	-1.0
4,857,852	-		PFLU_RS21540	0.32	-0.2
4,857,852	-		PFLU_RS21540	0.32	-1.0
4,857,886	+		PFLU_RS21540	0.34	-1.3
4,857,886	+		PFLU_RS21540	0.34	+1.3
4,857,886	+		PFLU_RS21540	0.34	+0.8
4,857,886	+		PFLU_RS21540	0.34	-1.5
4,857,887	-		PFLU_RS21540	0.34	-0.1
4,857,887	-		PFLU_RS21540	0.34	+0.6
4,857,950	+		PFLU_RS21540	0.37	+1.3
4,857,950	+		PFLU_RS21540	0.37	-0.3
4,857,951	-		PFLU_RS21540	0.37	-1.1
4,858,067	+		PFLU_RS21540	0.44	+0.0
4,858,068	-		PFLU_RS21540	0.44	+1.8
4,858,091	+		PFLU_RS21540	0.45	+1.7
4,858,091	+		PFLU_RS21540	0.45	-1.8
4,858,091	+		PFLU_RS21540	0.45	-0.0
4,858,092	-		PFLU_RS21540	0.45	-0.2