Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS09890

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
2,178,615	+		PFLU_RS09885	0.75	-0.6
2,178,622	+		PFLU_RS09885	0.75	-0.5
2,178,623	-		PFLU_RS09885	0.75	+0.2
2,178,623	-		PFLU_RS09885	0.75	-1.3
2,178,623	-		PFLU_RS09885	0.75	+0.5
2,178,684	+		PFLU_RS09885	0.80	+1.0
2,178,720	-		PFLU_RS09885	0.82	+0.0
2,178,720	-		PFLU_RS09885	0.82	-0.1
2,178,721	+		PFLU_RS09885	0.82	-0.7
2,178,721	+		PFLU_RS09885	0.82	-0.1
2,178,722	-		PFLU_RS09885	0.83	-2.1
2,178,723	+		PFLU_RS09885	0.83	-0.8
2,178,723	+		PFLU_RS09885	0.83	-2.4
2,178,723	+		PFLU_RS09885	0.83	-1.0
2,178,723	+		PFLU_RS09885	0.83	-0.5
2,178,723	+		PFLU_RS09885	0.83	-2.1
2,178,724	-		PFLU_RS09885	0.83	-2.5
2,178,724	-		PFLU_RS09885	0.83	-2.5
2,178,724	-		PFLU_RS09885	0.83	-0.9
2,178,724	-		PFLU_RS09885	0.83	-1.1
2,178,724	-		PFLU_RS09885	0.83	+1.0
2,178,724	-		PFLU_RS09885	0.83	+0.0
2,178,724	-		PFLU_RS09885	0.83	-1.1
2,178,760	+		PFLU_RS09885	0.85	-1.4
2,178,767	+		PFLU_RS09885	0.86	-1.0
2,178,767	+		PFLU_RS09885	0.86	-1.1
2,178,767	+		PFLU_RS09885	0.86	-0.1
2,178,767	+		PFLU_RS09885	0.86	-2.8
2,178,768	-		PFLU_RS09885	0.86	-2.2
2,178,768	-		PFLU_RS09885	0.86	-1.1
2,178,768	-		PFLU_RS09885	0.86	-1.7
2,178,768	-		PFLU_RS09885	0.86	+1.6
2,178,768	-		PFLU_RS09885	0.86	+0.6
2,178,768	-		PFLU_RS09885	0.86	+0.9
2,178,769	+		PFLU_RS09885	0.86	-2.2
2,178,769	+		PFLU_RS09885	0.86	-0.3
2,178,769	+		PFLU_RS09885	0.86	+0.2
2,178,769	+		PFLU_RS09885	0.86	-0.1
2,178,769	+		PFLU_RS09885	0.86	-1.4
2,178,770	-		PFLU_RS09885	0.86	-0.4
2,178,819	+		PFLU_RS09885	0.90	-0.4
2,178,831	+				-0.3
2,178,831	+				-0.3
2,178,831	+				-2.9
2,178,834	+				-1.5
2,178,834	+				-0.8
2,178,834	+				-1.2
2,178,835	-				+2.9
2,178,835	-				+0.5
2,178,841	+				+0.8
2,178,842	-				+0.5
2,178,856	-				+2.8
2,178,860	-				+1.7
2,178,862	-				-1.1
2,178,879	+				-0.1
2,178,887	-				-1.4
2,178,974	+				-0.4
2,178,975	-				-0.9
2,179,028	-				-0.9
2,179,078	+		PFLU_RS30605	0.19	+0.9
2,179,079	-		PFLU_RS30605	0.20	+0.6
2,179,144	+		PFLU_RS30605	0.34	+1.0
2,179,144	+		PFLU_RS30605	0.34	+0.2
2,179,144	+		PFLU_RS30605	0.34	-0.1
2,179,152	+		PFLU_RS30605	0.36	+1.3
2,179,153	-		PFLU_RS30605	0.37	-0.3
2,179,153	-		PFLU_RS30605	0.37	-1.0
2,179,153	-		PFLU_RS30605	0.37	+1.5
2,179,154	+		PFLU_RS30605	0.37	-0.5
2,179,154	+		PFLU_RS30605	0.37	+0.2
2,179,154	+		PFLU_RS30605	0.37	-0.1
2,179,154	+		PFLU_RS30605	0.37	-0.1
2,179,154	+		PFLU_RS30605	0.37	-0.2
2,179,154	+		PFLU_RS30605	0.37	+0.7
2,179,155	-		PFLU_RS30605	0.37	+2.9
2,179,155	-		PFLU_RS30605	0.37	+0.5
2,179,155	-		PFLU_RS30605	0.37	+0.6
2,179,155	-		PFLU_RS30605	0.37	+0.2
2,179,159	+		PFLU_RS30605	0.38	-0.1
2,179,160	-		PFLU_RS30605	0.38	+0.9
2,179,160	-		PFLU_RS30605	0.38	+1.1
2,179,160	-		PFLU_RS30605	0.38	-0.1
2,179,163	+		PFLU_RS30605	0.39	-0.9
2,179,163	+		PFLU_RS30605	0.39	-2.5
2,179,196	-		PFLU_RS30605	0.46	-2.5
2,179,222	-		PFLU_RS30605	0.52	+0.7
2,179,305	+		PFLU_RS30605	0.71	-0.7
2,179,306	-		PFLU_RS30605	0.71	+0.3
2,179,318	+		PFLU_RS30605	0.74	-0.0
2,179,318	+		PFLU_RS30605	0.74	-0.5
2,179,319	-		PFLU_RS30605	0.74	-1.9
2,179,349	-		PFLU_RS30605	0.81	-1.0
2,179,399	+				-1.8
2,179,400	-				+1.2
2,179,424	+				+1.7
2,179,428	+				-0.6
2,179,428	+				+0.1
2,179,428	+				-1.5
2,179,428	+				+0.4
2,179,429	-				-3.0
2,179,556	+				-0.3
2,179,570	+				+0.7
2,179,570	+				-1.4
2,179,570	+				+0.2
2,179,571	-				-0.9
2,179,571	-				+0.7
2,179,571	-				+1.5
2,179,574	+				-0.1
2,179,580	-				+0.5
2,179,619	-				-0.5
2,179,619	-				+1.8
2,179,627	+				-0.1
2,179,628	-				-0.5
2,179,802	+		PFLU_RS09890	0.19	+1.2
2,179,833	-		PFLU_RS09890	0.22	+0.0
2,179,901	+		PFLU_RS09890	0.29	-1.5
2,179,901	+		PFLU_RS09890	0.29	+0.2
2,179,973	-		PFLU_RS09890	0.36	+1.2
2,179,980	-		PFLU_RS09890	0.36	+0.3
2,179,980	-		PFLU_RS09890	0.36	+0.8
2,180,036	+		PFLU_RS09890	0.42	+0.5
2,180,036	+		PFLU_RS09890	0.42	+0.2
2,180,036	+		PFLU_RS09890	0.42	-0.4
2,180,037	-		PFLU_RS09890	0.42	+0.8
2,180,037	-		PFLU_RS09890	0.42	-0.2
2,180,037	-		PFLU_RS09890	0.42	+0.1
2,180,066	-		PFLU_RS09890	0.45	+0.9
2,180,066	-		PFLU_RS09890	0.45	-0.3
2,180,075	+		PFLU_RS09890	0.45	+1.0
2,180,156	+		PFLU_RS09890	0.53	-2.2
2,180,156	+		PFLU_RS09890	0.53	-1.1
2,180,157	-		PFLU_RS09890	0.53	+1.1
2,180,160	+		PFLU_RS09890	0.54	+0.5
2,180,161	-		PFLU_RS09890	0.54	-1.5
2,180,175	-		PFLU_RS09890	0.55	+1.0
2,180,247	-		PFLU_RS09890	0.62	-0.1
2,180,287	+		PFLU_RS09890	0.66	+0.9
2,180,320	+		PFLU_RS09890	0.69	+1.5
2,180,320	+		PFLU_RS09890	0.69	+0.6
2,180,324	+		PFLU_RS09890	0.69	+0.5
2,180,324	+		PFLU_RS09890	0.69	+0.6
2,180,325	-		PFLU_RS09890	0.69	+1.2
2,180,641	-				+0.6
2,180,704	+				+0.6
2,180,704	+				+1.6
2,180,730	-				+0.1
2,180,731	+				-0.8
2,180,731	+				-0.5
2,180,732	-				-0.9
2,180,735	+				-0.7
2,180,735	+				+0.5
2,180,740	+				-0.5
2,180,741	-				+0.5
2,180,764	+				+0.2
2,180,765	-				-0.1
2,180,922	-		PFLU_RS09895	0.19	-1.4
2,181,021	+		PFLU_RS09895	0.26	+0.5
2,181,021	+		PFLU_RS09895	0.26	-0.8
2,181,021	+		PFLU_RS09895	0.26	-0.1
2,181,021	+		PFLU_RS09895	0.26	-1.1
2,181,086	+		PFLU_RS09895	0.31	-0.2
2,181,086	+		PFLU_RS09895	0.31	+1.0
2,181,086	+		PFLU_RS09895	0.31	+1.2
2,181,086	+		PFLU_RS09895	0.31	-2.5
2,181,086	+		PFLU_RS09895	0.31	+0.3
2,181,086	+		PFLU_RS09895	0.31	+0.1
2,181,086	+		PFLU_RS09895	0.31	-0.1
2,181,087	-		PFLU_RS09895	0.31	+1.0
2,181,093	+		PFLU_RS09895	0.31	+0.6
2,181,093	+		PFLU_RS09895	0.31	+0.5
2,181,093	+		PFLU_RS09895	0.31	-0.0
2,181,094	-		PFLU_RS09895	0.31	+0.1
2,181,094	-		PFLU_RS09895	0.31	-0.8
2,181,122	+		PFLU_RS09895	0.33	+1.0
2,181,122	+		PFLU_RS09895	0.33	+0.8
2,181,122	+		PFLU_RS09895	0.33	-0.0
2,181,123	-		PFLU_RS09895	0.33	+2.2
2,181,123	-		PFLU_RS09895	0.33	+0.1
2,181,123	-		PFLU_RS09895	0.33	-1.5
2,181,123	-		PFLU_RS09895	0.33	+0.3
2,181,123	-		PFLU_RS09895	0.33	-0.2
2,181,163	+		PFLU_RS09895	0.36	-0.6
2,181,164	-		PFLU_RS09895	0.36	+0.6
2,181,210	+		PFLU_RS09895	0.39	-0.1
2,181,210	+		PFLU_RS09895	0.39	-0.0
2,181,210	+		PFLU_RS09895	0.39	-0.1
2,181,250	+		PFLU_RS09895	0.42	+1.2
2,181,250	+		PFLU_RS09895	0.42	+0.3
2,181,251	-		PFLU_RS09895	0.42	-1.7
2,181,251	-		PFLU_RS09895	0.42	+0.4
2,181,251	-		PFLU_RS09895	0.42	+0.2
2,181,251	-		PFLU_RS09895	0.42	-0.4
2,181,251	-		PFLU_RS09895	0.42	+0.6
2,181,251	-		PFLU_RS09895	0.42	-0.7
2,181,317	+		PFLU_RS09895	0.47	-0.5
2,181,373	+		PFLU_RS09895	0.51	+0.3
2,181,373	+		PFLU_RS09895	0.51	+0.2
2,181,374	-		PFLU_RS09895	0.51	+0.5
2,181,374	-		PFLU_RS09895	0.51	-0.5
2,181,409	+		PFLU_RS09895	0.53	-0.1
2,181,410	-		PFLU_RS09895	0.53	-0.8
2,181,522	+		PFLU_RS09895	0.61	-0.1
2,181,523	-		PFLU_RS09895	0.61	+0.9
2,181,523	-		PFLU_RS09895	0.61	+1.2
2,181,523	-		PFLU_RS09895	0.61	-1.9
2,181,553	+		PFLU_RS09895	0.64	+1.3
2,181,554	-		PFLU_RS09895	0.64	+0.5
2,181,569	-		PFLU_RS09895	0.65	-0.3