Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08020

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,787,476	+		PFLU_RS08015	0.59	+0.0
1,787,477	-		PFLU_RS08015	0.59	-0.3
1,787,477	-		PFLU_RS08015	0.59	-1.4
1,787,477	-		PFLU_RS08015	0.59	-0.9
1,787,477	-		PFLU_RS08015	0.59	+0.2
1,787,618	-		PFLU_RS08015	0.68	-0.7
1,787,618	-		PFLU_RS08015	0.68	+0.7
1,787,726	+		PFLU_RS08015	0.75	-0.2
1,787,804	+		PFLU_RS08015	0.80	+0.2
1,787,804	+		PFLU_RS08015	0.80	+0.3
1,787,804	+		PFLU_RS08015	0.80	+0.3
1,787,804	+		PFLU_RS08015	0.80	+0.4
1,787,804	+		PFLU_RS08015	0.80	+0.4
1,787,805	-		PFLU_RS08015	0.81	-0.6
1,787,805	-		PFLU_RS08015	0.81	+0.4
1,787,805	-		PFLU_RS08015	0.81	+0.2
1,787,805	-		PFLU_RS08015	0.81	+0.1
1,787,996	+				-0.3
1,787,996	+				+0.4
1,787,996	+				-1.1
1,787,996	+				+1.8
1,788,130	+				-0.6
1,788,130	+				+0.5
1,788,130	+				+0.7
1,788,130	+				-0.5
1,788,130	+				+0.2
1,788,130	+				-0.1
1,788,130	+				+0.4
1,788,131	-				+2.6
1,788,131	-				-2.2
1,788,131	-				+1.2
1,788,131	-				-1.1
1,788,131	-				+0.4
1,788,131	-				+0.8
1,788,511	+		PFLU_RS08020	0.32	-1.3
1,788,511	+		PFLU_RS08020	0.32	+0.4
1,788,511	+		PFLU_RS08020	0.32	-1.0
1,788,511	+		PFLU_RS08020	0.32	+2.0
1,788,511	+		PFLU_RS08020	0.32	+0.5
1,788,595	+		PFLU_RS08020	0.41	+0.2
1,788,595	+		PFLU_RS08020	0.41	+0.1
1,788,595	+		PFLU_RS08020	0.41	-0.5
1,788,595	+		PFLU_RS08020	0.41	-1.1
1,788,596	-		PFLU_RS08020	0.41	+0.1
1,788,596	-		PFLU_RS08020	0.41	-1.9
1,788,596	-		PFLU_RS08020	0.41	+1.2
1,788,596	-		PFLU_RS08020	0.41	-0.0
1,788,619	+		PFLU_RS08020	0.44	-0.1
1,788,619	+		PFLU_RS08020	0.44	+0.3
1,788,619	+		PFLU_RS08020	0.44	+0.3
1,788,620	-		PFLU_RS08020	0.44	+1.5
1,788,634	+		PFLU_RS08020	0.45	-1.3
1,788,634	+		PFLU_RS08020	0.45	-1.1
1,788,635	-		PFLU_RS08020	0.45	-1.1
1,788,635	-		PFLU_RS08020	0.45	+0.3
1,788,635	-		PFLU_RS08020	0.45	+0.8
1,788,832	+		PFLU_RS08020	0.66	-0.6
1,788,832	+		PFLU_RS08020	0.66	-0.9
1,788,832	+		PFLU_RS08020	0.66	-0.6
1,788,832	+		PFLU_RS08020	0.66	-1.0
1,788,832	+		PFLU_RS08020	0.66	-1.6
1,788,832	+		PFLU_RS08020	0.66	+1.1
1,788,833	-		PFLU_RS08020	0.66	+0.5
1,788,833	-		PFLU_RS08020	0.66	-1.1
1,788,833	-		PFLU_RS08020	0.66	-0.0
1,788,836	+		PFLU_RS08020	0.67	-1.6
1,788,837	-		PFLU_RS08020	0.67	+0.2
1,788,837	-		PFLU_RS08020	0.67	-0.2
1,788,985	-		PFLU_RS08020	0.83	+0.0
1,789,002	+		PFLU_RS08020	0.85	+0.8
1,789,002	+		PFLU_RS08020	0.85	-2.3
1,789,002	+		PFLU_RS08020	0.85	+1.7
1,789,002	+		PFLU_RS08020	0.85	+0.5
1,789,002	+		PFLU_RS08020	0.85	-0.3
1,789,002	+		PFLU_RS08020	0.85	-0.4
1,789,002	+		PFLU_RS08020	0.85	-0.5
1,789,002	+		PFLU_RS08020	0.85	-0.2
1,789,002	+		PFLU_RS08020	0.85	+0.5
1,789,002	+		PFLU_RS08020	0.85	-0.4
1,789,002	+		PFLU_RS08020	0.85	+0.6
1,789,002	+		PFLU_RS08020	0.85	-0.3
1,789,002	+		PFLU_RS08020	0.85	-1.3
1,789,002	+		PFLU_RS08020	0.85	+1.8
1,789,002	+		PFLU_RS08020	0.85	-0.8
1,789,002	+		PFLU_RS08020	0.85	-0.1
1,789,002	+		PFLU_RS08020	0.85	-2.6
1,789,002	+		PFLU_RS08020	0.85	-0.5
1,789,002	+		PFLU_RS08020	0.85	+1.4
1,789,003	-		PFLU_RS08020	0.85	+0.3
1,789,003	-		PFLU_RS08020	0.85	+2.1
1,789,003	-		PFLU_RS08020	0.85	+0.5
1,789,003	-		PFLU_RS08020	0.85	-1.1
1,789,003	-		PFLU_RS08020	0.85	-0.6
1,789,003	-		PFLU_RS08020	0.85	-0.1
1,789,006	+		PFLU_RS08020	0.85	+0.8
1,789,006	+		PFLU_RS08020	0.85	-0.6
1,789,006	+		PFLU_RS08020	0.85	+0.7
1,789,006	+		PFLU_RS08020	0.85	-0.6
1,789,006	+		PFLU_RS08020	0.85	-0.2
1,789,006	+		PFLU_RS08020	0.85	-0.2
1,789,006	+		PFLU_RS08020	0.85	+0.4
1,789,006	+		PFLU_RS08020	0.85	-0.0
1,789,006	+		PFLU_RS08020	0.85	+0.8
1,789,006	+		PFLU_RS08020	0.85	+0.2
1,789,006	+		PFLU_RS08020	0.85	-2.0
1,789,006	+		PFLU_RS08020	0.85	-0.5
1,789,006	+		PFLU_RS08020	0.85	+0.9
1,789,006	+		PFLU_RS08020	0.85	-1.7
1,789,006	+		PFLU_RS08020	0.85	+0.6
1,789,006	+		PFLU_RS08020	0.85	-0.1
1,789,006	+		PFLU_RS08020	0.85	-0.4
1,789,006	+		PFLU_RS08020	0.85	+0.4
1,789,007	-		PFLU_RS08020	0.85	-1.0
1,789,007	-		PFLU_RS08020	0.85	-0.1
1,789,007	-		PFLU_RS08020	0.85	+1.5
1,789,007	-		PFLU_RS08020	0.85	-0.2
1,789,007	-		PFLU_RS08020	0.85	-0.1
1,789,007	-		PFLU_RS08020	0.85	-0.5
1,789,007	-		PFLU_RS08020	0.85	+0.7
1,789,114	+				-0.2
1,789,115	-				+1.1
1,789,115	-				+0.9
1,789,183	+				+1.0
1,789,184	-				-0.2
1,789,201	+				+0.4
1,789,202	-				+0.5
1,789,202	-				+0.0
1,789,205	+				-0.7
1,789,205	+				+0.2
1,789,205	+				+0.1
1,789,205	+				+0.6
1,789,205	+				+0.3
1,789,205	+				+0.8
1,789,205	+				-0.4
1,789,205	+				+0.5
1,789,205	+				+0.4
1,789,206	-				+1.4
1,789,206	-				-0.3
1,789,206	-				-0.5
1,789,206	-				-2.2
1,789,206	-				-0.7
1,789,206	-				-0.1
1,789,209	+				+0.3
1,789,209	+				-0.4
1,789,209	+				-0.1
1,789,209	+				-0.1
1,789,210	-				+1.6
1,789,221	+				-0.5
1,789,221	+				-0.8
1,789,221	+				+0.7
1,789,222	-				-0.6
1,789,222	-				+0.2
1,789,367	+		PFLU_RS08025	0.17	+0.5
1,789,367	+		PFLU_RS08025	0.17	+0.2
1,789,436	-		PFLU_RS08025	0.26	+0.6
1,789,436	-		PFLU_RS08025	0.26	-1.1
1,789,436	-		PFLU_RS08025	0.26	+0.5
1,789,443	+		PFLU_RS08025	0.27	-2.3
1,789,444	-		PFLU_RS08025	0.27	-0.4
1,789,647	+		PFLU_RS08025	0.53	-0.8
1,789,648	-		PFLU_RS08025	0.54	-0.2
1,789,648	-		PFLU_RS08025	0.54	-1.5
1,789,648	-		PFLU_RS08025	0.54	+1.2
1,789,648	-		PFLU_RS08025	0.54	-0.7
1,789,713	+		PFLU_RS08025	0.62	-0.8
1,789,713	+		PFLU_RS08025	0.62	+0.6
1,789,714	-		PFLU_RS08025	0.62	-0.1
1,789,714	-		PFLU_RS08025	0.62	-0.3
1,789,714	-		PFLU_RS08025	0.62	-0.1
1,789,714	-		PFLU_RS08025	0.62	-0.1
1,789,714	-		PFLU_RS08025	0.62	-0.1
1,789,739	-		PFLU_RS08025	0.65	+0.5
1,789,773	+		PFLU_RS08025	0.70	-1.1
1,789,773	+		PFLU_RS08025	0.70	-0.3
1,789,773	+		PFLU_RS08025	0.70	+0.9
1,789,774	-		PFLU_RS08025	0.70	+0.4
1,789,793	+		PFLU_RS08025	0.73	-1.2
1,789,793	+		PFLU_RS08025	0.73	-1.0
1,789,794	-		PFLU_RS08025	0.73	-2.7
1,789,794	-		PFLU_RS08025	0.73	+0.6
1,789,794	-		PFLU_RS08025	0.73	-0.7
1,789,881	+		PFLU_RS08025	0.84	-2.3
1,789,881	+		PFLU_RS08025	0.84	-0.0
1,789,881	+		PFLU_RS08025	0.84	+0.2
1,789,881	+		PFLU_RS08025	0.84	-1.1
1,789,881	+		PFLU_RS08025	0.84	-0.2
1,789,881	+		PFLU_RS08025	0.84	-1.6
1,789,882	-		PFLU_RS08025	0.84	-0.1
1,789,882	-		PFLU_RS08025	0.84	-1.2
1,789,882	-		PFLU_RS08025	0.84	+0.4
1,789,882	-		PFLU_RS08025	0.84	+0.7
1,789,882	-		PFLU_RS08025	0.84	+0.0
1,789,882	-		PFLU_RS08025	0.84	-1.2
1,789,882	-		PFLU_RS08025	0.84	+0.5
1,789,887	+		PFLU_RS08025	0.85	-1.0
1,789,887	+		PFLU_RS08025	0.85	-0.5
1,789,887	+		PFLU_RS08025	0.85	-0.2
1,789,887	+		PFLU_RS08025	0.85	+0.4
1,789,887	+		PFLU_RS08025	0.85	+0.7
1,789,887	+		PFLU_RS08025	0.85	+0.0
1,789,888	-		PFLU_RS08025	0.85	+0.3
1,789,888	-		PFLU_RS08025	0.85	+0.4
1,789,888	-		PFLU_RS08025	0.85	-0.7
1,789,888	-		PFLU_RS08025	0.85	+0.1
1,789,888	-		PFLU_RS08025	0.85	-0.8
1,789,888	-		PFLU_RS08025	0.85	+1.2
1,789,888	-		PFLU_RS08025	0.85	+1.3
1,789,888	-		PFLU_RS08025	0.85	-0.2
1,789,888	-		PFLU_RS08025	0.85	-0.8
1,789,888	-		PFLU_RS08025	0.85	+0.9
1,789,888	-		PFLU_RS08025	0.85	-0.2
1,789,888	-		PFLU_RS08025	0.85	-0.3
1,789,888	-		PFLU_RS08025	0.85	-0.1
1,789,888	-		PFLU_RS08025	0.85	+0.5
1,789,924	+		PFLU_RS08025	0.90	-0.9
1,789,979	+				-0.1
1,789,980	-				-0.8
1,789,980	-				+0.5
1,789,980	-				+1.0
1,789,980	-				+0.4
1,789,980	-				-1.3
1,789,980	-				+1.3
1,789,987	+				-0.5
1,789,987	+				-0.1
1,789,987	+				+0.1
1,789,987	+				-0.3
1,789,987	+				+0.4
1,789,988	-				+0.8
1,789,988	-				+1.1
1,789,988	-				-0.4
1,789,988	-				-0.5
1,789,988	-				+0.1
1,789,988	-				-0.2
1,790,046	+				-1.3
1,790,046	+				-1.8
1,790,046	+				-2.1
1,790,046	+				+0.9
1,790,046	+				+0.7
1,790,046	+				-1.9
1,790,047	-				-0.7
1,790,047	-				+0.2
1,790,047	-				+0.1
1,790,047	-				-0.5
1,790,047	-				-0.3
1,790,047	-				-0.1
1,790,086	+				-0.5
1,790,086	+				-0.1
1,790,086	+				+0.0
1,790,086	+				+0.6
1,790,087	-				+0.4
1,790,088	+				+0.6
1,790,098	+				-0.3
1,790,098	+				+0.3
1,790,098	+				-0.2
1,790,098	+				+0.7
1,790,098	+				+0.8
1,790,099	-				+1.5
1,790,099	-				-1.6
1,790,099	-				+0.8
1,790,099	-				+0.5
1,790,099	-				+0.8