Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07960

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,773,418	-		PFLU_RS07950	0.47	-0.3
1,773,418	-		PFLU_RS07950	0.47	-1.2
1,773,418	-		PFLU_RS07950	0.47	+1.1
1,773,449	+		PFLU_RS07950	0.50	-0.4
1,773,449	+		PFLU_RS07950	0.50	-0.4
1,773,450	-		PFLU_RS07950	0.50	-0.2
1,773,452	+		PFLU_RS07950	0.50	-0.2
1,773,452	+		PFLU_RS07950	0.50	+0.1
1,773,452	+		PFLU_RS07950	0.50	-0.8
1,773,453	-		PFLU_RS07950	0.51	+0.8
1,773,453	-		PFLU_RS07950	0.51	-0.3
1,773,453	-		PFLU_RS07950	0.51	+0.4
1,773,453	-		PFLU_RS07950	0.51	+1.4
1,773,453	-		PFLU_RS07950	0.51	-0.7
1,773,453	-		PFLU_RS07950	0.51	+0.4
1,773,484	-		PFLU_RS07950	0.54	-0.8
1,773,514	-		PFLU_RS07950	0.57	+0.2
1,773,531	-		PFLU_RS07950	0.59	+0.3
1,773,531	-		PFLU_RS07950	0.59	-3.0
1,773,554	+		PFLU_RS07950	0.62	+0.1
1,773,554	+		PFLU_RS07950	0.62	-0.5
1,773,554	+		PFLU_RS07950	0.62	-1.1
1,773,554	+		PFLU_RS07950	0.62	-0.1
1,773,555	-		PFLU_RS07950	0.62	+1.2
1,773,555	-		PFLU_RS07950	0.62	+0.4
1,773,555	-		PFLU_RS07950	0.62	+0.5
1,773,555	-		PFLU_RS07950	0.62	-3.0
1,773,555	-		PFLU_RS07950	0.62	+0.0
1,773,555	-		PFLU_RS07950	0.62	+0.2
1,773,576	+		PFLU_RS07950	0.64	+0.9
1,773,618	+		PFLU_RS07950	0.69	-0.4
1,773,618	+		PFLU_RS07950	0.69	-0.6
1,773,618	+		PFLU_RS07950	0.69	-1.7
1,773,819	+				+0.1
1,773,820	-				+1.4
1,773,820	-				-0.8
1,773,820	-				-0.5
1,773,820	-				-0.4
1,773,820	-				+0.7
1,773,820	-				-0.4
1,773,820	-				+1.1
1,773,973	+				-0.2
1,773,973	+				-0.6
1,773,973	+				-0.1
1,773,973	+				-0.2
1,773,974	-				-0.0
1,773,974	-				+0.2
1,773,974	-				-0.5
1,773,974	-				-0.6
1,773,974	-				+0.0
1,773,974	-				-0.1
1,773,974	-				-1.6
1,773,974	-				-0.8
1,774,040	+				-0.4
1,774,040	+				-0.7
1,774,040	+				+0.8
1,774,040	+				-0.1
1,774,040	+				+0.9
1,774,040	+				+1.0
1,774,040	+				-1.3
1,774,040	+				+1.0
1,774,040	+				+1.2
1,774,040	+				+0.6
1,774,040	+				-0.8
1,774,040	+				+1.5
1,774,040	+				-0.1
1,774,040	+				-0.4
1,774,041	-				-0.6
1,774,041	-				+0.5
1,774,041	-				+0.5
1,774,041	-				-0.2
1,774,041	-				-1.3
1,774,041	-				+0.5
1,774,041	-				+0.2
1,774,041	-				-1.5
1,774,072	+				-0.0
1,774,072	+				-0.2
1,774,072	+				+0.4
1,774,072	+				+0.7
1,774,072	+				-1.0
1,774,072	+				-0.3
1,774,072	+				+0.1
1,774,072	+				-0.3
1,774,072	+				+0.7
1,774,072	+				+1.5
1,774,072	+				+2.3
1,774,072	+				+0.4
1,774,072	+				-0.8
1,774,072	+				-1.4
1,774,072	+				-3.2
1,774,072	+				-1.4
1,774,072	+				-0.1
1,774,072	+				-0.8
1,774,072	+				-0.5
1,774,072	+				-1.0
1,774,073	-				+0.3
1,774,073	-				+1.1
1,774,073	-				+0.1
1,774,073	-				+0.1
1,774,073	-				+1.5
1,774,073	-				-2.7
1,774,073	-				-0.5
1,774,085	+				-0.9
1,774,085	+				+0.7
1,774,086	-				-0.8
1,774,086	-				+1.0
1,774,172	+		PFLU_RS07955	0.30	-0.2
1,774,172	+		PFLU_RS07955	0.30	-0.7
1,774,172	+		PFLU_RS07955	0.30	+0.4
1,774,172	+		PFLU_RS07955	0.30	+1.0
1,774,172	+		PFLU_RS07955	0.30	+0.2
1,774,172	+		PFLU_RS07955	0.30	-0.5
1,774,172	+		PFLU_RS07955	0.30	-0.2
1,774,172	+		PFLU_RS07955	0.30	-2.5
1,774,172	+		PFLU_RS07955	0.30	-0.1
1,774,172	+		PFLU_RS07955	0.30	+0.8
1,774,172	+		PFLU_RS07955	0.30	-1.4
1,774,173	-		PFLU_RS07955	0.30	+0.2
1,774,173	-		PFLU_RS07955	0.30	+2.9
1,774,173	-		PFLU_RS07955	0.30	+0.9
1,774,173	-		PFLU_RS07955	0.30	-0.3
1,774,173	-		PFLU_RS07955	0.30	-1.5
1,774,173	-		PFLU_RS07955	0.30	+0.1
1,774,173	-		PFLU_RS07955	0.30	-0.7
1,774,173	-		PFLU_RS07955	0.30	-2.0
1,774,173	-		PFLU_RS07955	0.30	-0.3
1,774,173	-		PFLU_RS07955	0.30	-0.2
1,774,173	-		PFLU_RS07955	0.30	+0.4
1,774,173	-		PFLU_RS07955	0.30	-2.0
1,774,173	-		PFLU_RS07955	0.30	-0.7
1,774,173	-		PFLU_RS07955	0.30	+1.2
1,774,173	-		PFLU_RS07955	0.30	-0.2
1,774,173	-		PFLU_RS07955	0.30	+1.3
1,774,173	-		PFLU_RS07955	0.30	+0.5
1,774,176	+		PFLU_RS07955	0.31	+0.5
1,774,176	+		PFLU_RS07955	0.31	+0.6
1,774,176	+		PFLU_RS07955	0.31	+0.8
1,774,176	+		PFLU_RS07955	0.31	+0.4
1,774,176	+		PFLU_RS07955	0.31	-1.5
1,774,176	+		PFLU_RS07955	0.31	+0.2
1,774,176	+		PFLU_RS07955	0.31	-0.9
1,774,176	+		PFLU_RS07955	0.31	-1.3
1,774,176	+		PFLU_RS07955	0.31	+0.4
1,774,177	-		PFLU_RS07955	0.32	+1.0
1,774,177	-		PFLU_RS07955	0.32	+0.0
1,774,177	-		PFLU_RS07955	0.32	-1.3
1,774,177	-		PFLU_RS07955	0.32	+0.1
1,774,177	-		PFLU_RS07955	0.32	+0.4
1,774,177	-		PFLU_RS07955	0.32	-0.6
1,774,177	-		PFLU_RS07955	0.32	+1.3
1,774,177	-		PFLU_RS07955	0.32	+1.0
1,774,177	-		PFLU_RS07955	0.32	+0.2
1,774,177	-		PFLU_RS07955	0.32	+1.1
1,774,177	-		PFLU_RS07955	0.32	-1.6
1,774,244	+		PFLU_RS07955	0.52	+0.2
1,774,244	+		PFLU_RS07955	0.52	+2.1
1,774,244	+		PFLU_RS07955	0.52	-1.8
1,774,244	+		PFLU_RS07955	0.52	+1.5
1,774,244	+		PFLU_RS07955	0.52	+0.8
1,774,245	-		PFLU_RS07955	0.52	+0.5
1,774,245	-		PFLU_RS07955	0.52	-0.8
1,774,245	-		PFLU_RS07955	0.52	+0.3
1,774,245	-		PFLU_RS07955	0.52	-1.0
1,774,248	+		PFLU_RS07955	0.53	-1.1
1,774,248	+		PFLU_RS07955	0.53	+1.0
1,774,248	+		PFLU_RS07955	0.53	-1.6
1,774,248	+		PFLU_RS07955	0.53	+0.2
1,774,248	+		PFLU_RS07955	0.53	-0.3
1,774,248	+		PFLU_RS07955	0.53	+0.5
1,774,248	+		PFLU_RS07955	0.53	+0.3
1,774,248	+		PFLU_RS07955	0.53	-1.4
1,774,248	+		PFLU_RS07955	0.53	-0.3
1,774,248	+		PFLU_RS07955	0.53	-1.6
1,774,248	+		PFLU_RS07955	0.53	-1.1
1,774,248	+		PFLU_RS07955	0.53	+0.6
1,774,248	+		PFLU_RS07955	0.53	-1.6
1,774,248	+		PFLU_RS07955	0.53	+0.5
1,774,248	+		PFLU_RS07955	0.53	+0.0
1,774,248	+		PFLU_RS07955	0.53	+0.9
1,774,248	+		PFLU_RS07955	0.53	+1.5
1,774,248	+		PFLU_RS07955	0.53	-0.7
1,774,248	+		PFLU_RS07955	0.53	-1.2
1,774,249	-		PFLU_RS07955	0.53	-0.5
1,774,249	-		PFLU_RS07955	0.53	-0.3
1,774,249	-		PFLU_RS07955	0.53	+0.5
1,774,249	-		PFLU_RS07955	0.53	+0.5
1,774,249	-		PFLU_RS07955	0.53	+1.4
1,774,249	-		PFLU_RS07955	0.53	-1.2
1,774,249	-		PFLU_RS07955	0.53	+0.0
1,774,249	-		PFLU_RS07955	0.53	+0.7
1,774,249	-		PFLU_RS07955	0.53	+1.1
1,774,249	-		PFLU_RS07955	0.53	-0.8
1,774,249	-		PFLU_RS07955	0.53	-0.4
1,774,249	-		PFLU_RS07955	0.53	-0.1
1,774,249	-		PFLU_RS07955	0.53	-1.1
1,774,249	-		PFLU_RS07955	0.53	+1.2
1,774,249	-		PFLU_RS07955	0.53	+0.7
1,774,249	-		PFLU_RS07955	0.53	+0.9
1,774,286	+		PFLU_RS07955	0.65	+2.2
1,774,286	+		PFLU_RS07955	0.65	-0.6
1,774,286	+		PFLU_RS07955	0.65	+0.3
1,774,286	+		PFLU_RS07955	0.65	+1.1
1,774,287	-		PFLU_RS07955	0.65	+0.3
1,774,287	-		PFLU_RS07955	0.65	+0.0
1,774,334	+		PFLU_RS07955	0.79	-2.7
1,774,334	+		PFLU_RS07955	0.79	-0.6
1,774,334	+		PFLU_RS07955	0.79	+0.4
1,774,335	-		PFLU_RS07955	0.79	-1.3
1,774,335	-		PFLU_RS07955	0.79	-0.6
1,774,335	-		PFLU_RS07955	0.79	-0.3
1,774,335	-		PFLU_RS07955	0.79	-0.3
1,774,335	-		PFLU_RS07955	0.79	-0.3
1,774,335	-		PFLU_RS07955	0.79	+1.5
1,774,361	-		PFLU_RS07955	0.87	+1.1
1,774,361	-		PFLU_RS07955	0.87	+0.7
1,774,361	-		PFLU_RS07955	0.87	+0.6
1,774,489	+		PFLU_RS07960	0.21	+0.3
1,774,579	+		PFLU_RS07960	0.45	+0.3
1,774,590	-		PFLU_RS07960	0.48	+0.7
1,774,626	+		PFLU_RS07960	0.58	-0.7
1,774,626	+		PFLU_RS07960	0.58	+0.8
1,774,626	+		PFLU_RS07960	0.58	-1.1
1,774,626	+		PFLU_RS07960	0.58	+2.2
1,774,626	+		PFLU_RS07960	0.58	-0.1
1,774,627	-		PFLU_RS07960	0.58	+0.7
1,774,627	-		PFLU_RS07960	0.58	-2.9
1,774,627	-		PFLU_RS07960	0.58	-0.1
1,774,770	+				+0.3
1,774,771	-				+0.4
1,774,786	+				-1.4
1,774,786	+				-0.2
1,774,786	+				+0.2
1,774,786	+				-0.5
1,774,787	-				-0.2
1,774,787	-				+0.2
1,774,787	-				-0.3
1,774,811	-				+0.0
1,774,811	-				-0.7
1,774,811	-				-1.1
1,774,851	+				-0.3
1,774,851	+				+0.6
1,774,851	+				-1.2
1,774,851	+				-1.0
1,774,851	+				+0.8
1,774,851	+				-0.6
1,774,852	-				-0.9
1,774,852	-				+0.3
1,774,852	-				-0.3
1,774,852	-				+0.2
1,774,913	+		PFLU_RS31460	0.44	-0.6
1,774,953	+		PFLU_RS31460	0.74	+0.2
1,774,953	+		PFLU_RS31460	0.74	+0.1
1,774,953	+		PFLU_RS31460	0.74	+0.4
1,774,953	+		PFLU_RS31460	0.74	+1.0
1,774,954	-		PFLU_RS31460	0.74	-0.8
1,774,954	-		PFLU_RS31460	0.74	-0.2
1,774,954	-		PFLU_RS31460	0.74	+0.1
1,774,958	+		PFLU_RS31460	0.77	+0.5
1,774,959	-		PFLU_RS31460	0.78	-0.1
1,774,959	-		PFLU_RS31460	0.78	+1.0
1,775,226	+				+0.7
1,775,226	+				-1.0
1,775,227	-				+0.4
1,775,227	-				+0.3
1,775,227	-				-0.4
1,775,247	+				-0.6
1,775,247	+				+0.4
1,775,248	-				+0.4
1,775,248	-				+0.5
1,775,248	-				+1.0
1,775,284	+				-0.5
1,775,298	+				+0.2
1,775,298	+				-0.5
1,775,298	+				-0.1
1,775,298	+				+0.3
1,775,298	+				+0.7
1,775,298	+				-0.7
1,775,299	-				+0.8
1,775,299	-				-0.6
1,775,299	-				+1.5
1,775,299	-				+0.6
1,775,299	-				+1.2
1,775,342	+				-2.2
1,775,342	+				+1.1
1,775,343	-				-0.3
1,775,343	-				+2.1
1,775,343	-				+0.0
1,775,390	+				+0.3
1,775,391	-				-0.5
1,775,391	-				-1.0
1,775,418	+				-0.6
1,775,514	+				+0.9
1,775,515	-				+1.4
1,775,546	+				-0.7
1,775,546	+				-0.8
1,775,546	+				-2.5
1,775,547	-				-0.3
1,775,547	-				-0.1
1,775,547	-				-0.3
1,775,596	+				-1.0
1,775,597	-				+0.3
1,775,597	-				-0.9
1,775,782	+		PFLU_RS07970	0.19	-0.4
1,775,782	+		PFLU_RS07970	0.19	-0.5
1,775,782	+		PFLU_RS07970	0.19	+0.5
1,775,782	+		PFLU_RS07970	0.19	-2.6
1,775,782	+		PFLU_RS07970	0.19	-0.0
1,775,782	+		PFLU_RS07970	0.19	-0.8
1,775,783	-		PFLU_RS07970	0.19	-0.1
1,775,783	-		PFLU_RS07970	0.19	-0.1
1,775,783	-		PFLU_RS07970	0.19	-0.9
1,775,783	-		PFLU_RS07970	0.19	+0.4