Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06130

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,370,019	+		PFLU_RS06120	0.55	-0.5
1,370,019	+		PFLU_RS06120	0.55	-1.5
1,370,019	+		PFLU_RS06120	0.55	-0.1
1,370,073	+		PFLU_RS06120	0.68	-0.3
1,370,074	-		PFLU_RS06120	0.68	-0.4
1,370,215	-				+0.7
1,370,232	+				-0.3
1,370,232	+				+1.0
1,370,233	-				-0.4
1,370,233	-				+1.5
1,370,316	+				-0.7
1,370,317	-				+0.2
1,370,460	+				-0.4
1,370,460	+				-0.6
1,370,460	+				+1.3
1,370,481	+				-0.9
1,370,481	+				+1.2
1,370,515	+				+1.8
1,370,515	+				+1.0
1,370,515	+				+0.6
1,370,515	+				+0.5
1,370,515	+				+1.5
1,370,515	+				+0.4
1,370,515	+				-1.4
1,370,515	+				-1.5
1,370,515	+				+0.0
1,370,515	+				+0.8
1,370,515	+				+1.4
1,370,515	+				+1.7
1,370,515	+				-0.9
1,370,515	+				+0.4
1,370,515	+				-0.9
1,370,515	+				+0.2
1,370,515	+				+1.2
1,370,515	+				-1.1
1,370,515	+				-0.5
1,370,515	+				+0.7
1,370,515	+				-0.0
1,370,515	+				+0.3
1,370,515	+				+0.2
1,370,515	+				-0.3
1,370,515	+				-0.2
1,370,515	+				+0.8
1,370,515	+				+0.4
1,370,515	+				-1.5
1,370,515	+				-0.4
1,370,515	+				+0.6
1,370,515	+				-1.1
1,370,515	+				-0.2
1,370,516	-				-0.4
1,370,516	-				+1.6
1,370,516	-				-0.1
1,370,516	-				-0.4
1,370,516	-				-0.6
1,370,516	-				+0.9
1,370,516	-				-0.1
1,370,516	-				+1.2
1,370,516	-				+1.1
1,370,516	-				+0.8
1,370,516	-				+0.1
1,370,516	-				-0.9
1,370,516	-				-0.3
1,370,516	-				+1.2
1,370,516	-				+1.1
1,370,516	-				+0.4
1,370,516	-				-0.1
1,370,516	-				-0.1
1,370,516	-				-2.4
1,370,516	-				-1.1
1,370,516	-				+0.3
1,370,516	-				-0.3
1,370,516	-				-0.2
1,370,526	+		PFLU_RS06125	0.12	+0.9
1,370,557	+		PFLU_RS06125	0.21	-1.2
1,370,558	-		PFLU_RS06125	0.22	+0.3
1,370,558	-		PFLU_RS06125	0.22	-0.5
1,370,574	+		PFLU_RS06125	0.26	+0.7
1,370,574	+		PFLU_RS06125	0.26	+0.4
1,370,574	+		PFLU_RS06125	0.26	+0.7
1,370,574	+		PFLU_RS06125	0.26	+0.2
1,370,574	+		PFLU_RS06125	0.26	+0.6
1,370,574	+		PFLU_RS06125	0.26	+0.4
1,370,574	+		PFLU_RS06125	0.26	-0.7
1,370,574	+		PFLU_RS06125	0.26	+0.1
1,370,575	-		PFLU_RS06125	0.27	-0.7
1,370,575	-		PFLU_RS06125	0.27	-0.2
1,370,625	+		PFLU_RS06125	0.41	+0.5
1,370,625	+		PFLU_RS06125	0.41	-0.8
1,370,626	-		PFLU_RS06125	0.41	-1.6
1,370,626	-		PFLU_RS06125	0.41	+1.0
1,370,626	-		PFLU_RS06125	0.41	-2.2
1,370,626	-		PFLU_RS06125	0.41	+0.2
1,370,704	-		PFLU_RS06125	0.64	-1.8
1,370,760	+		PFLU_RS06125	0.80	-2.2
1,370,839	+				+0.1
1,370,914	+				-0.1
1,370,914	+				+1.1
1,370,914	+				+0.4
1,370,914	+				-0.3
1,370,915	-				+1.3
1,370,915	-				+1.0
1,370,915	-				-0.6
1,370,915	-				+0.5
1,370,915	-				+1.9
1,370,915	-				-2.7
1,370,934	+				+1.0
1,370,934	+				-0.1
1,370,934	+				-1.5
1,370,947	+				-0.4
1,370,948	-				-0.1
1,371,090	+				-0.8
1,371,091	-				+0.9
1,371,264	+				-0.5
1,371,264	+				-1.0
1,371,319	+		PFLU_RS06130	0.12	-0.2
1,371,320	-		PFLU_RS06130	0.12	+0.1
1,371,459	+		PFLU_RS06130	0.17	-0.8
1,371,459	+		PFLU_RS06130	0.17	+3.3
1,371,459	+		PFLU_RS06130	0.17	-0.5
1,371,459	+		PFLU_RS06130	0.17	+0.5
1,371,459	+		PFLU_RS06130	0.17	-0.2
1,371,459	+		PFLU_RS06130	0.17	+0.9
1,371,460	-		PFLU_RS06130	0.17	-1.1
1,371,460	-		PFLU_RS06130	0.17	+0.5
1,371,460	-		PFLU_RS06130	0.17	-0.7
1,371,460	-		PFLU_RS06130	0.17	+1.7
1,371,460	-		PFLU_RS06130	0.17	-0.2
1,371,460	-		PFLU_RS06130	0.17	+0.2
1,371,460	-		PFLU_RS06130	0.17	+0.1
1,371,666	+		PFLU_RS06130	0.25	-0.0
1,371,666	+		PFLU_RS06130	0.25	-1.1
1,371,667	-		PFLU_RS06130	0.25	+1.0
1,371,667	-		PFLU_RS06130	0.25	-0.5
1,371,667	-		PFLU_RS06130	0.25	-1.2
1,371,843	+		PFLU_RS06130	0.32	+0.7
1,371,843	+		PFLU_RS06130	0.32	-1.9
1,371,843	+		PFLU_RS06130	0.32	-1.1
1,371,843	+		PFLU_RS06130	0.32	-0.6
1,371,844	-		PFLU_RS06130	0.32	+0.2
1,371,844	-		PFLU_RS06130	0.32	-1.2
1,371,844	-		PFLU_RS06130	0.32	+0.7
1,371,844	-		PFLU_RS06130	0.32	+1.0
1,371,855	-		PFLU_RS06130	0.32	-0.2
1,371,855	-		PFLU_RS06130	0.32	-0.1
1,372,077	+		PFLU_RS06130	0.41	-1.1
1,372,077	+		PFLU_RS06130	0.41	+0.3
1,372,078	-		PFLU_RS06130	0.41	-0.6
1,372,078	-		PFLU_RS06130	0.41	-0.3
1,372,078	-		PFLU_RS06130	0.41	+0.6
1,372,078	-		PFLU_RS06130	0.41	+0.6
1,372,233	+		PFLU_RS06130	0.46	-0.6
1,372,233	+		PFLU_RS06130	0.46	+0.7
1,372,233	+		PFLU_RS06130	0.46	-0.8
1,372,234	-		PFLU_RS06130	0.46	-0.3
1,372,234	-		PFLU_RS06130	0.46	+1.3
1,372,234	-		PFLU_RS06130	0.46	+1.0
1,372,330	-		PFLU_RS06130	0.50	-2.0
1,372,349	+		PFLU_RS06130	0.51	-2.4
1,372,413	+		PFLU_RS06130	0.53	+0.3
1,372,413	+		PFLU_RS06130	0.53	-2.6
1,372,413	+		PFLU_RS06130	0.53	+1.4
1,372,413	+		PFLU_RS06130	0.53	-1.8
1,372,413	+		PFLU_RS06130	0.53	-1.3
1,372,413	+		PFLU_RS06130	0.53	+0.2
1,372,413	+		PFLU_RS06130	0.53	-0.5
1,372,414	-		PFLU_RS06130	0.53	-0.3
1,372,414	-		PFLU_RS06130	0.53	-0.2
1,372,414	-		PFLU_RS06130	0.53	+0.6
1,372,414	-		PFLU_RS06130	0.53	-0.3
1,372,414	-		PFLU_RS06130	0.53	-0.5
1,372,414	-		PFLU_RS06130	0.53	+0.1
1,372,469	+		PFLU_RS06130	0.55	+0.9
1,372,470	-		PFLU_RS06130	0.55	+1.1
1,372,697	+		PFLU_RS06130	0.64	-1.1
1,372,698	-		PFLU_RS06130	0.64	-0.3
1,372,700	-		PFLU_RS06130	0.64	-1.8
1,372,899	+		PFLU_RS06130	0.72	-1.5
1,372,899	+		PFLU_RS06130	0.72	-1.6
1,372,899	+		PFLU_RS06130	0.72	-0.6
1,372,900	-		PFLU_RS06130	0.72	+0.6
1,372,900	-		PFLU_RS06130	0.72	+0.3
1,372,900	-		PFLU_RS06130	0.72	-3.3
1,372,900	-		PFLU_RS06130	0.72	+0.5
1,372,900	-		PFLU_RS06130	0.72	+2.3
1,372,913	-		PFLU_RS06130	0.72	-2.0
1,373,341	-		PFLU_RS06130	0.89	-1.1
1,373,341	-		PFLU_RS06130	0.89	-1.1
1,373,398	+				-0.4
1,373,398	+				-0.5
1,373,399	-				+0.0
1,373,399	-				+0.7
1,373,499	+				-2.2
1,373,499	+				-1.9
1,373,499	+				-0.2
1,373,499	+				-0.8
1,373,499	+				+0.1
1,373,499	+				-0.7
1,373,499	+				+0.2
1,373,499	+				+0.1
1,373,499	+				+0.4
1,373,500	-				+0.2
1,373,500	-				-0.3
1,373,500	-				+0.8
1,373,671	+				+0.9
1,373,671	+				+0.3
1,373,711	-				+0.1
1,373,711	-				-0.1
1,373,711	-				+0.7
1,373,740	+				+0.7
1,373,740	+				+0.5
1,373,740	+				+0.4
1,373,740	+				-0.1
1,373,741	-				-0.1
1,373,741	-				+0.1
1,373,741	-				-1.1
1,373,741	-				+0.1
1,373,744	+				+0.5
1,373,744	+				+1.3
1,373,744	+				+0.0
1,373,744	+				+0.2
1,373,744	+				+0.6
1,373,744	+				-0.7
1,373,744	+				-0.2
1,373,744	+				-0.6
1,373,744	+				-1.0
1,373,744	+				-2.2
1,373,745	-				+0.7
1,373,745	-				+0.4
1,373,745	-				-0.2
1,373,745	-				+0.1
1,373,745	-				-0.2
1,373,745	-				+0.7
1,373,745	-				+0.7
1,373,745	-				+0.0
1,373,745	-				-0.1
1,373,745	-				-2.0
1,373,745	-				+0.4
1,373,745	-				+3.0
1,373,809	+				+1.3
1,373,809	+				-0.9
1,373,809	+				+0.5
1,373,809	+				-0.2
1,373,849	+				+0.7
1,373,895	+				-0.4
1,374,617	+				+0.3
1,374,617	+				-0.1
1,374,617	+				-0.6
1,374,617	+				-0.3
1,374,618	-				-1.6
1,374,618	-				+2.3
1,374,619	+				-0.6
1,374,619	+				+0.5
1,374,619	+				-0.4