Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05945

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,327,005	-		PFLU_RS05935	0.74	+1.8
1,327,005	-		PFLU_RS05935	0.74	-1.2
1,327,005	-		PFLU_RS05935	0.74	-0.1
1,327,088	+				+2.2
1,327,088	+				-0.9
1,327,088	+				-0.9
1,327,088	+				+1.3
1,327,088	+				-2.1
1,327,088	+				-0.8
1,327,088	+				-1.1
1,327,089	-				+1.2
1,327,089	-				-0.3
1,327,089	-				-0.2
1,327,089	-				+0.1
1,327,089	-				-0.0
1,327,089	-				-1.8
1,327,089	-				-1.2
1,327,105	+				-0.3
1,327,105	+				+0.4
1,327,105	+				+0.7
1,327,105	+				+0.6
1,327,105	+				+0.7
1,327,105	+				-2.2
1,327,105	+				-0.5
1,327,106	-				-0.9
1,327,106	-				+2.5
1,327,106	-				+1.3
1,327,106	-				+0.3
1,327,106	-				-2.2
1,327,106	-				-0.9
1,327,180	-				+1.0
1,327,180	-				-0.4
1,327,180	-				-0.7
1,327,192	+				+0.2
1,327,193	-				-1.2
1,327,193	-				+0.5
1,327,216	+				-0.1
1,327,216	+				+1.4
1,327,217	-				-0.0
1,327,408	+		PFLU_RS05940	0.31	-0.0
1,327,408	+		PFLU_RS05940	0.31	+0.8
1,327,408	+		PFLU_RS05940	0.31	-0.3
1,327,408	+		PFLU_RS05940	0.31	+1.3
1,327,408	+		PFLU_RS05940	0.31	+0.8
1,327,408	+		PFLU_RS05940	0.31	+0.6
1,327,409	-		PFLU_RS05940	0.31	+0.2
1,327,409	-		PFLU_RS05940	0.31	-0.4
1,327,409	-		PFLU_RS05940	0.31	-0.1
1,327,409	-		PFLU_RS05940	0.31	-0.1
1,327,409	-		PFLU_RS05940	0.31	+0.1
1,327,409	-		PFLU_RS05940	0.31	+0.3
1,327,474	+		PFLU_RS05940	0.40	+0.3
1,327,474	+		PFLU_RS05940	0.40	-0.2
1,327,474	+		PFLU_RS05940	0.40	+1.0
1,327,474	+		PFLU_RS05940	0.40	-1.3
1,327,474	+		PFLU_RS05940	0.40	-0.4
1,327,474	+		PFLU_RS05940	0.40	-0.0
1,327,474	+		PFLU_RS05940	0.40	+0.3
1,327,475	-		PFLU_RS05940	0.40	+0.0
1,327,475	-		PFLU_RS05940	0.40	+0.1
1,327,475	-		PFLU_RS05940	0.40	+1.6
1,327,475	-		PFLU_RS05940	0.40	-0.2
1,327,540	-		PFLU_RS05940	0.49	-1.8
1,327,682	+		PFLU_RS05940	0.69	-0.2
1,327,682	+		PFLU_RS05940	0.69	+0.4
1,327,682	+		PFLU_RS05940	0.69	-1.6
1,327,683	-		PFLU_RS05940	0.69	-0.5
1,327,683	-		PFLU_RS05940	0.69	+1.1
1,327,683	-		PFLU_RS05940	0.69	+1.2
1,327,683	-		PFLU_RS05940	0.69	-1.8
1,327,683	-		PFLU_RS05940	0.69	+0.0
1,327,869	-				+0.6
1,327,888	-				+0.2
1,327,888	-				+0.7
1,327,888	-				-0.3
1,327,930	+				-0.5
1,327,935	+				-0.2
1,327,935	+				+0.7
1,327,935	+				-1.5
1,327,935	+				+0.8
1,327,935	+				-0.4
1,327,935	+				+0.4
1,327,936	-				+0.4
1,327,936	-				-0.0
1,327,936	-				-1.0
1,327,936	-				-0.1
1,327,936	-				+0.1
1,327,936	-				+0.4
1,327,936	-				-1.5
1,328,039	+				+1.1
1,328,039	+				-1.7
1,328,040	-				+1.5
1,328,113	+		PFLU_RS05945	0.23	-1.2
1,328,113	+		PFLU_RS05945	0.23	-0.4
1,328,113	+		PFLU_RS05945	0.23	-0.8
1,328,113	+		PFLU_RS05945	0.23	-0.3
1,328,114	-		PFLU_RS05945	0.24	-1.5
1,328,114	-		PFLU_RS05945	0.24	-1.6
1,328,114	-		PFLU_RS05945	0.24	-1.2
1,328,114	-		PFLU_RS05945	0.24	+1.0
1,328,168	+		PFLU_RS05945	0.35	-1.9
1,328,168	+		PFLU_RS05945	0.35	-0.7
1,328,168	+		PFLU_RS05945	0.35	+0.6
1,328,168	+		PFLU_RS05945	0.35	+0.3
1,328,168	+		PFLU_RS05945	0.35	+2.1
1,328,168	+		PFLU_RS05945	0.35	-0.6
1,328,169	-		PFLU_RS05945	0.35	-0.9
1,328,169	-		PFLU_RS05945	0.35	-0.6
1,328,169	-		PFLU_RS05945	0.35	+0.4
1,328,249	+		PFLU_RS05945	0.52	-0.5
1,328,249	+		PFLU_RS05945	0.52	-0.4
1,328,249	+		PFLU_RS05945	0.52	-0.1
1,328,250	-		PFLU_RS05945	0.53	+0.3
1,328,326	+		PFLU_RS05945	0.69	-1.9
1,328,326	+		PFLU_RS05945	0.69	+2.0
1,328,326	+		PFLU_RS05945	0.69	-0.1
1,328,327	-		PFLU_RS05945	0.69	-0.8
1,328,327	-		PFLU_RS05945	0.69	-0.6
1,328,327	-		PFLU_RS05945	0.69	-0.1
1,328,362	+		PFLU_RS05945	0.76	-0.6
1,328,362	+		PFLU_RS05945	0.76	-0.9
1,328,362	+		PFLU_RS05945	0.76	+0.8
1,328,362	+		PFLU_RS05945	0.76	+2.3
1,328,362	+		PFLU_RS05945	0.76	+1.2
1,328,362	+		PFLU_RS05945	0.76	+0.1
1,328,362	+		PFLU_RS05945	0.76	-0.5
1,328,362	+		PFLU_RS05945	0.76	-0.2
1,328,362	+		PFLU_RS05945	0.76	+0.1
1,328,362	+		PFLU_RS05945	0.76	+0.7
1,328,362	+		PFLU_RS05945	0.76	+1.0
1,328,362	+		PFLU_RS05945	0.76	-0.9
1,328,362	+		PFLU_RS05945	0.76	+0.0
1,328,362	+		PFLU_RS05945	0.76	-0.5
1,328,362	+		PFLU_RS05945	0.76	-0.5
1,328,362	+		PFLU_RS05945	0.76	+2.4
1,328,362	+		PFLU_RS05945	0.76	+0.6
1,328,363	-		PFLU_RS05945	0.77	-0.3
1,328,363	-		PFLU_RS05945	0.77	-0.3
1,328,363	-		PFLU_RS05945	0.77	+0.3
1,328,363	-		PFLU_RS05945	0.77	+0.5
1,328,363	-		PFLU_RS05945	0.77	+0.7
1,328,363	-		PFLU_RS05945	0.77	+1.0
1,328,363	-		PFLU_RS05945	0.77	-0.2
1,328,363	-		PFLU_RS05945	0.77	-0.4
1,328,363	-		PFLU_RS05945	0.77	-1.2
1,328,363	-		PFLU_RS05945	0.77	-0.5
1,328,363	-		PFLU_RS05945	0.77	+0.6
1,328,363	-		PFLU_RS05945	0.77	-0.5
1,328,363	-		PFLU_RS05945	0.77	+0.6
1,328,363	-		PFLU_RS05945	0.77	-0.7
1,328,363	-		PFLU_RS05945	0.77	+1.0
1,328,363	-		PFLU_RS05945	0.77	+0.1
1,328,366	+		PFLU_RS05945	0.77	+1.5
1,328,367	-		PFLU_RS05945	0.78	-0.0
1,328,409	+		PFLU_RS05945	0.87	-0.0
1,328,409	+		PFLU_RS05945	0.87	+0.0
1,328,410	-		PFLU_RS05945	0.87	-1.5
1,328,410	-		PFLU_RS05945	0.87	+1.4
1,328,410	-		PFLU_RS05945	0.87	+0.8
1,328,410	-		PFLU_RS05945	0.87	+0.0
1,328,441	+				+0.9
1,328,441	+				-2.0
1,328,441	+				-0.2
1,328,441	+				-0.3
1,328,441	+				+0.1
1,328,441	+				-0.9
1,328,441	+				-1.3
1,328,441	+				-0.8
1,328,442	-				+0.4
1,328,442	-				+0.8
1,328,442	-				+0.1
1,328,442	-				-0.4
1,328,442	-				+0.6
1,328,511	+				-0.5
1,328,511	+				+0.9
1,328,511	+				+0.1
1,328,512	-				+0.7
1,328,512	-				+0.1
1,328,512	-				+1.0
1,328,517	+				+0.3
1,328,518	-				-0.0
1,328,518	-				-0.3
1,328,518	-				+0.6
1,328,597	+				-0.9
1,328,598	-				+0.0
1,328,664	+				+0.7
1,328,664	+				+0.8
1,329,191	+		PFLU_RS05950	0.46	+0.4
1,329,191	+		PFLU_RS05950	0.46	-2.8
1,329,191	+		PFLU_RS05950	0.46	-0.9
1,329,191	+		PFLU_RS05950	0.46	+0.7
1,329,191	+		PFLU_RS05950	0.46	+1.8
1,329,192	-		PFLU_RS05950	0.46	+1.3
1,329,192	-		PFLU_RS05950	0.46	-1.1
1,329,192	-		PFLU_RS05950	0.46	-0.6
1,329,192	-		PFLU_RS05950	0.46	+1.3
1,329,192	-		PFLU_RS05950	0.46	+0.2
1,329,287	+		PFLU_RS05950	0.54	+1.4
1,329,288	-		PFLU_RS05950	0.54	-0.1
1,329,288	-		PFLU_RS05950	0.54	-1.3
1,329,288	-		PFLU_RS05950	0.54	-1.8
1,329,288	-		PFLU_RS05950	0.54	-0.3