Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05795

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS05785 and PFLU_RS05790 are separated by 21 nucleotidesPFLU_RS05790 and PFLU_RS05795 are separated by 3 nucleotidesPFLU_RS05795 and PFLU_RS05800 are separated by 9 nucleotidesPFLU_RS05800 and PFLU_RS05805 overlap by 4 nucleotides PFLU_RS05785: PFLU_RS05785 - hypothetical protein, at 1,305,089 to 1,305,433 _RS05785 PFLU_RS05790: PFLU_RS05790 - hypothetical protein, at 1,305,455 to 1,305,970 _RS05790 PFLU_RS05795: PFLU_RS05795 - phage baseplate assembly protein V, at 1,305,974 to 1,306,585 _RS05795 PFLU_RS05800: PFLU_RS05800 - phage baseplate protein, at 1,306,595 to 1,306,927 _RS05800 PFLU_RS05805: PFLU_RS05805 - baseplate J protein, at 1,306,924 to 1,307,919 _RS05805 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1304.986 kb on + strandat 1304.987 kb on - strandat 1305.024 kb on + strandat 1305.024 kb on + strandat 1305.024 kb on + strandat 1305.024 kb on + strandat 1305.024 kb on + strandat 1305.024 kb on + strandat 1305.025 kb on - strandat 1305.025 kb on - strandat 1305.025 kb on - strandat 1305.025 kb on - strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.028 kb on + strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.029 kb on - strandat 1305.141 kb on + strand, within PFLU_RS05785at 1305.142 kb on - strand, within PFLU_RS05785at 1305.142 kb on - strand, within PFLU_RS05785at 1305.281 kb on + strand, within PFLU_RS05785at 1305.365 kb on + strand, within PFLU_RS05785at 1305.365 kb on + strand, within PFLU_RS05785at 1305.365 kb on + strand, within PFLU_RS05785at 1305.366 kb on - strand, within PFLU_RS05785at 1305.366 kb on - strand, within PFLU_RS05785at 1305.366 kb on - strand, within PFLU_RS05785at 1305.824 kb on + strand, within PFLU_RS05790at 1305.824 kb on + strand, within PFLU_RS05790at 1305.825 kb on - strand, within PFLU_RS05790at 1305.825 kb on - strand, within PFLU_RS05790at 1305.825 kb on - strand, within PFLU_RS05790at 1305.860 kb on + strand, within PFLU_RS05790at 1305.968 kb on + strandat 1305.969 kb on - strandat 1305.990 kb on + strandat 1305.991 kb on - strandat 1305.991 kb on - strandat 1305.991 kb on - strandat 1305.991 kb on - strandat 1306.117 kb on + strand, within PFLU_RS05795at 1306.117 kb on + strand, within PFLU_RS05795at 1306.117 kb on + strand, within PFLU_RS05795at 1306.118 kb on - strand, within PFLU_RS05795at 1306.118 kb on - strand, within PFLU_RS05795at 1306.118 kb on - strand, within PFLU_RS05795at 1306.118 kb on - strand, within PFLU_RS05795at 1306.239 kb on - strand, within PFLU_RS05795at 1306.239 kb on - strand, within PFLU_RS05795at 1306.239 kb on - strand, within PFLU_RS05795at 1306.364 kb on + strand, within PFLU_RS05795at 1306.365 kb on - strand, within PFLU_RS05795at 1306.472 kb on - strand, within PFLU_RS05795at 1306.709 kb on + strand, within PFLU_RS05800at 1306.796 kb on + strand, within PFLU_RS05800at 1306.797 kb on - strand, within PFLU_RS05800at 1307.029 kb on + strand, within PFLU_RS05805at 1307.030 kb on - strand, within PFLU_RS05805at 1307.030 kb on - strand, within PFLU_RS05805at 1307.152 kb on + strand, within PFLU_RS05805at 1307.152 kb on + strand, within PFLU_RS05805at 1307.152 kb on + strand, within PFLU_RS05805at 1307.152 kb on + strand, within PFLU_RS05805at 1307.152 kb on + strand, within PFLU_RS05805at 1307.152 kb on + strand, within PFLU_RS05805at 1307.152 kb on + strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.153 kb on - strand, within PFLU_RS05805at 1307.323 kb on + strand, within PFLU_RS05805at 1307.323 kb on + strand, within PFLU_RS05805at 1307.323 kb on + strand, within PFLU_RS05805at 1307.323 kb on + strand, within PFLU_RS05805at 1307.323 kb on + strand, within PFLU_RS05805at 1307.323 kb on + strand, within PFLU_RS05805at 1307.324 kb on - strand, within PFLU_RS05805at 1307.324 kb on - strand, within PFLU_RS05805at 1307.324 kb on - strand, within PFLU_RS05805at 1307.324 kb on - strand, within PFLU_RS05805at 1307.365 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.446 kb on + strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.447 kb on - strand, within PFLU_RS05805at 1307.448 kb on + strand, within PFLU_RS05805at 1307.448 kb on + strand, within PFLU_RS05805at 1307.448 kb on + strand, within PFLU_RS05805at 1307.448 kb on + strand, within PFLU_RS05805at 1307.449 kb on - strand, within PFLU_RS05805at 1307.449 kb on - strand, within PFLU_RS05805at 1307.449 kb on - strand, within PFLU_RS05805at 1307.449 kb on - strand, within PFLU_RS05805

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
1,304,986 + -1.2
1,304,987 - +0.3
1,305,024 + -3.2
1,305,024 + -4.7
1,305,024 + -4.7
1,305,024 + -3.4
1,305,024 + -3.4
1,305,024 + -2.9
1,305,025 - +1.7
1,305,025 - +0.7
1,305,025 - +1.3
1,305,025 - +0.9
1,305,028 + -2.5
1,305,028 + -4.4
1,305,028 + -3.7
1,305,028 + -3.4
1,305,028 + -3.7
1,305,028 + -4.4
1,305,028 + -2.1
1,305,028 + -3.2
1,305,028 + -3.9
1,305,028 + -2.7
1,305,028 + -4.0
1,305,028 + -1.6
1,305,028 + -2.9
1,305,028 + -4.0
1,305,028 + -3.4
1,305,028 + -1.6
1,305,029 - +0.2
1,305,029 - -1.6
1,305,029 - +0.3
1,305,029 - +2.4
1,305,029 - +0.4
1,305,029 - +0.2
1,305,029 - +0.7
1,305,029 - +0.5
1,305,029 - -0.2
1,305,029 - -0.4
1,305,029 - -2.0
1,305,029 - +0.8
1,305,141 + PFLU_RS05785 0.15 +0.1
1,305,142 - PFLU_RS05785 0.15 -0.1
1,305,142 - PFLU_RS05785 0.15 -1.3
1,305,281 + PFLU_RS05785 0.56 +1.3
1,305,365 + PFLU_RS05785 0.80 +0.0
1,305,365 + PFLU_RS05785 0.80 +1.4
1,305,365 + PFLU_RS05785 0.80 +1.0
1,305,366 - PFLU_RS05785 0.80 -0.6
1,305,366 - PFLU_RS05785 0.80 +0.1
1,305,366 - PFLU_RS05785 0.80 -0.4
1,305,824 + PFLU_RS05790 0.72 -0.2
1,305,824 + PFLU_RS05790 0.72 -0.9
1,305,825 - PFLU_RS05790 0.72 +0.6
1,305,825 - PFLU_RS05790 0.72 -0.2
1,305,825 - PFLU_RS05790 0.72 -0.5
1,305,860 + PFLU_RS05790 0.78 +0.8
1,305,968 + +0.1
1,305,969 - -1.1
1,305,990 + -0.1
1,305,991 - +0.8
1,305,991 - -0.7
1,305,991 - -0.1
1,305,991 - +0.7
1,306,117 + PFLU_RS05795 0.23 -2.0
1,306,117 + PFLU_RS05795 0.23 +0.9
1,306,117 + PFLU_RS05795 0.23 -1.4
1,306,118 - PFLU_RS05795 0.24 +0.8
1,306,118 - PFLU_RS05795 0.24 -0.1
1,306,118 - PFLU_RS05795 0.24 -0.6
1,306,118 - PFLU_RS05795 0.24 -0.0
1,306,239 - PFLU_RS05795 0.43 +0.3
1,306,239 - PFLU_RS05795 0.43 +0.1
1,306,239 - PFLU_RS05795 0.43 -0.2
1,306,364 + PFLU_RS05795 0.64 +0.3
1,306,365 - PFLU_RS05795 0.64 +0.1
1,306,472 - PFLU_RS05795 0.81 +1.1
1,306,709 + PFLU_RS05800 0.34 -1.0
1,306,796 + PFLU_RS05800 0.60 -0.4
1,306,797 - PFLU_RS05800 0.61 +1.4
1,307,029 + PFLU_RS05805 0.11 -1.5
1,307,030 - PFLU_RS05805 0.11 -1.2
1,307,030 - PFLU_RS05805 0.11 -1.9
1,307,152 + PFLU_RS05805 0.23 +0.3
1,307,152 + PFLU_RS05805 0.23 +0.8
1,307,152 + PFLU_RS05805 0.23 -1.1
1,307,152 + PFLU_RS05805 0.23 +0.4
1,307,152 + PFLU_RS05805 0.23 +0.6
1,307,152 + PFLU_RS05805 0.23 -3.1
1,307,152 + PFLU_RS05805 0.23 +1.3
1,307,153 - PFLU_RS05805 0.23 -1.6
1,307,153 - PFLU_RS05805 0.23 +0.3
1,307,153 - PFLU_RS05805 0.23 +0.4
1,307,153 - PFLU_RS05805 0.23 +0.2
1,307,153 - PFLU_RS05805 0.23 +0.0
1,307,153 - PFLU_RS05805 0.23 -0.2
1,307,153 - PFLU_RS05805 0.23 -0.1
1,307,153 - PFLU_RS05805 0.23 -1.0
1,307,153 - PFLU_RS05805 0.23 +0.7
1,307,153 - PFLU_RS05805 0.23 +0.0
1,307,153 - PFLU_RS05805 0.23 +0.8
1,307,323 + PFLU_RS05805 0.40 +0.7
1,307,323 + PFLU_RS05805 0.40 -1.4
1,307,323 + PFLU_RS05805 0.40 +0.7
1,307,323 + PFLU_RS05805 0.40 +0.8
1,307,323 + PFLU_RS05805 0.40 -0.1
1,307,323 + PFLU_RS05805 0.40 +0.3
1,307,324 - PFLU_RS05805 0.40 -0.8
1,307,324 - PFLU_RS05805 0.40 +0.1
1,307,324 - PFLU_RS05805 0.40 -0.7
1,307,324 - PFLU_RS05805 0.40 -0.8
1,307,365 + PFLU_RS05805 0.44 -0.6
1,307,446 + PFLU_RS05805 0.52 -1.3
1,307,446 + PFLU_RS05805 0.52 +0.4
1,307,446 + PFLU_RS05805 0.52 +0.9
1,307,446 + PFLU_RS05805 0.52 -0.3
1,307,446 + PFLU_RS05805 0.52 +1.4
1,307,446 + PFLU_RS05805 0.52 -0.9
1,307,446 + PFLU_RS05805 0.52 +0.0
1,307,446 + PFLU_RS05805 0.52 -1.9
1,307,446 + PFLU_RS05805 0.52 -0.6
1,307,446 + PFLU_RS05805 0.52 -0.2
1,307,446 + PFLU_RS05805 0.52 -0.0
1,307,447 - PFLU_RS05805 0.53 +0.2
1,307,447 - PFLU_RS05805 0.53 +0.4
1,307,447 - PFLU_RS05805 0.53 -0.7
1,307,447 - PFLU_RS05805 0.53 +0.3
1,307,447 - PFLU_RS05805 0.53 +0.4
1,307,447 - PFLU_RS05805 0.53 -0.2
1,307,447 - PFLU_RS05805 0.53 -0.9
1,307,447 - PFLU_RS05805 0.53 +0.1
1,307,447 - PFLU_RS05805 0.53 +0.4
1,307,447 - PFLU_RS05805 0.53 -1.4
1,307,448 + PFLU_RS05805 0.53 +0.7
1,307,448 + PFLU_RS05805 0.53 -2.3
1,307,448 + PFLU_RS05805 0.53 +1.3
1,307,448 + PFLU_RS05805 0.53 -0.9
1,307,449 - PFLU_RS05805 0.53 +0.4
1,307,449 - PFLU_RS05805 0.53 +0.4
1,307,449 - PFLU_RS05805 0.53 +0.7
1,307,449 - PFLU_RS05805 0.53 +1.1

Or see this region's nucleotide sequence