Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05310

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,180,858	+		PFLU_RS05300	0.37	-0.3
1,180,858	+		PFLU_RS05300	0.37	-0.7
1,180,858	+		PFLU_RS05300	0.37	+0.2
1,180,859	-		PFLU_RS05300	0.38	+0.6
1,180,978	+		PFLU_RS05300	0.56	+0.2
1,180,978	+		PFLU_RS05300	0.56	+2.0
1,180,978	+		PFLU_RS05300	0.56	+0.2
1,180,979	-		PFLU_RS05300	0.56	-0.4
1,180,979	-		PFLU_RS05300	0.56	+0.3
1,180,979	-		PFLU_RS05300	0.56	+0.2
1,180,979	-		PFLU_RS05300	0.56	+1.0
1,180,981	+		PFLU_RS05300	0.57	-0.1
1,180,981	+		PFLU_RS05300	0.57	-0.4
1,180,981	+		PFLU_RS05300	0.57	+0.8
1,180,982	-		PFLU_RS05300	0.57	+1.9
1,180,982	-		PFLU_RS05300	0.57	+0.0
1,180,982	-		PFLU_RS05300	0.57	-0.1
1,180,982	-		PFLU_RS05300	0.57	+1.2
1,181,033	+		PFLU_RS05300	0.65	+0.4
1,181,034	-		PFLU_RS05300	0.65	+0.8
1,181,110	+		PFLU_RS05300	0.77	-0.0
1,181,210	-				+1.1
1,181,210	-				-0.2
1,181,210	-				-0.4
1,181,210	-				-0.9
1,181,210	-				+0.7
1,181,213	+				+0.4
1,181,214	-				+0.5
1,181,214	-				-0.7
1,181,214	-				+0.0
1,181,255	+				+0.5
1,181,255	+				+0.3
1,181,255	+				-0.2
1,181,420	+		PFLU_RS05305	0.42	+0.8
1,181,420	+		PFLU_RS05305	0.42	-0.2
1,181,420	+		PFLU_RS05305	0.42	-1.2
1,181,421	-		PFLU_RS05305	0.42	-0.1
1,181,421	-		PFLU_RS05305	0.42	-2.1
1,181,421	-		PFLU_RS05305	0.42	-0.2
1,181,532	+		PFLU_RS05305	0.71	+0.8
1,181,532	+		PFLU_RS05305	0.71	-0.4
1,181,533	-		PFLU_RS05305	0.71	+1.5
1,181,681	+				+0.2
1,181,681	+				-0.0
1,181,681	+				+0.5
1,181,681	+				-0.4
1,181,681	+				-0.2
1,181,681	+				-1.2
1,181,682	-				+0.6
1,181,682	-				+0.2
1,181,682	-				-0.4
1,181,682	-				+1.1
1,181,704	-				-0.1
1,181,704	-				-0.3
1,181,704	-				+0.1
1,181,786	-				-1.4
1,181,830	+				-0.7
1,181,845	+				+0.4
1,181,856	+				-0.8
1,181,857	-				-0.2
1,181,857	-				+0.9
1,181,857	-				+0.2
1,181,857	-				+0.4
1,181,857	-				-2.9
1,181,922	+				+0.5
1,181,922	+				-0.0
1,182,032	+				-1.6
1,182,032	+				-0.9
1,182,032	+				-2.9
1,182,032	+				+1.1
1,182,032	+				+0.5
1,182,033	-				+0.6
1,182,033	-				-0.5
1,182,033	-				-0.8
1,182,033	-				-1.5
1,182,033	-				-0.9
1,182,033	-				+0.2
1,182,033	-				-0.8
1,182,033	-				+0.4
1,182,092	-				-0.0
1,182,107	+		PFLU_RS05310	0.10	-0.3
1,182,108	-		PFLU_RS05310	0.10	+0.8
1,182,240	+		PFLU_RS05310	0.16	+1.7
1,182,240	+		PFLU_RS05310	0.16	+0.5
1,182,240	+		PFLU_RS05310	0.16	+1.0
1,182,240	+		PFLU_RS05310	0.16	-0.8
1,182,240	+		PFLU_RS05310	0.16	-2.5
1,182,240	+		PFLU_RS05310	0.16	+1.2
1,182,240	+		PFLU_RS05310	0.16	+2.5
1,182,240	+		PFLU_RS05310	0.16	+0.0
1,182,240	+		PFLU_RS05310	0.16	+0.5
1,182,240	+		PFLU_RS05310	0.16	-0.3
1,182,240	+		PFLU_RS05310	0.16	-0.1
1,182,241	-		PFLU_RS05310	0.16	+0.4
1,182,241	-		PFLU_RS05310	0.16	-0.2
1,182,241	-		PFLU_RS05310	0.16	+0.1
1,182,241	-		PFLU_RS05310	0.16	+0.5
1,182,241	-		PFLU_RS05310	0.16	+0.1
1,182,241	-		PFLU_RS05310	0.16	+0.1
1,182,247	-		PFLU_RS05310	0.16	-0.4
1,182,316	+		PFLU_RS05310	0.19	+0.5
1,182,317	-		PFLU_RS05310	0.19	-1.0
1,182,317	-		PFLU_RS05310	0.19	-0.9
1,182,687	+		PFLU_RS05310	0.34	-0.4
1,182,687	+		PFLU_RS05310	0.34	-0.3
1,182,687	+		PFLU_RS05310	0.34	-1.0
1,182,688	-		PFLU_RS05310	0.34	+0.0
1,182,688	-		PFLU_RS05310	0.34	+0.5
1,182,688	-		PFLU_RS05310	0.34	-1.0
1,182,712	+		PFLU_RS05310	0.35	-1.2
1,182,801	+		PFLU_RS05310	0.39	+1.7
1,182,801	+		PFLU_RS05310	0.39	-0.2
1,182,802	-		PFLU_RS05310	0.39	+0.3
1,182,975	+		PFLU_RS05310	0.46	-1.3
1,182,975	+		PFLU_RS05310	0.46	-0.2
1,182,975	+		PFLU_RS05310	0.46	-1.6
1,182,975	+		PFLU_RS05310	0.46	+0.5
1,182,976	-		PFLU_RS05310	0.46	-2.2
1,182,976	-		PFLU_RS05310	0.46	-0.4
1,182,976	-		PFLU_RS05310	0.46	-0.0
1,182,976	-		PFLU_RS05310	0.46	-1.4
1,182,976	-		PFLU_RS05310	0.46	-0.3
1,182,976	-		PFLU_RS05310	0.46	-0.4
1,183,035	+		PFLU_RS05310	0.49	+0.1
1,183,138	+		PFLU_RS05310	0.53	+0.7
1,183,138	+		PFLU_RS05310	0.53	+0.3
1,183,138	+		PFLU_RS05310	0.53	+1.2
1,183,139	-		PFLU_RS05310	0.53	+1.0
1,183,139	-		PFLU_RS05310	0.53	-0.8
1,183,139	-		PFLU_RS05310	0.53	-1.6
1,183,139	-		PFLU_RS05310	0.53	+0.5
1,183,140	+		PFLU_RS05310	0.53	+0.3
1,183,140	+		PFLU_RS05310	0.53	-1.2
1,183,141	-		PFLU_RS05310	0.53	-0.4
1,183,141	-		PFLU_RS05310	0.53	+0.9
1,183,141	-		PFLU_RS05310	0.53	-0.3
1,183,287	+		PFLU_RS05310	0.59	-0.4
1,183,287	+		PFLU_RS05310	0.59	-0.8
1,183,287	+		PFLU_RS05310	0.59	+2.4
1,183,287	+		PFLU_RS05310	0.59	-0.3
1,183,287	+		PFLU_RS05310	0.59	+0.6
1,183,287	+		PFLU_RS05310	0.59	-0.8
1,183,287	+		PFLU_RS05310	0.59	-0.1
1,183,288	-		PFLU_RS05310	0.59	+0.2
1,183,288	-		PFLU_RS05310	0.59	+1.4
1,183,288	-		PFLU_RS05310	0.59	-0.7
1,183,305	+		PFLU_RS05310	0.60	+0.6
1,183,713	+		PFLU_RS05310	0.77	-1.1
1,183,713	+		PFLU_RS05310	0.77	+2.8
1,183,713	+		PFLU_RS05310	0.77	+0.5
1,183,713	+		PFLU_RS05310	0.77	+1.0
1,183,713	+		PFLU_RS05310	0.77	-0.2
1,183,713	+		PFLU_RS05310	0.77	-0.4
1,183,714	-		PFLU_RS05310	0.77	-0.1
1,183,714	-		PFLU_RS05310	0.77	-0.5
1,183,714	-		PFLU_RS05310	0.77	+0.3
1,183,714	-		PFLU_RS05310	0.77	+0.5
1,183,714	-		PFLU_RS05310	0.77	-1.9
1,183,714	-		PFLU_RS05310	0.77	-0.2
1,183,714	-		PFLU_RS05310	0.77	-0.0
1,183,734	+		PFLU_RS05310	0.78	+1.4
1,183,788	+		PFLU_RS05310	0.80	-0.6
1,183,789	-		PFLU_RS05310	0.80	-0.1
1,183,789	-		PFLU_RS05310	0.80	+1.2
1,183,848	+		PFLU_RS05310	0.82	+0.4
1,183,848	+		PFLU_RS05310	0.82	+0.0
1,183,848	+		PFLU_RS05310	0.82	-0.2
1,183,849	-		PFLU_RS05310	0.82	+1.5
1,183,966	-		PFLU_RS05310	0.87	-0.1
1,184,057	+				-1.5
1,184,058	-				-0.4
1,184,149	+				+0.6
1,184,149	+				-0.8
1,184,149	+				-0.8
1,184,150	-				-2.1
1,184,150	-				+0.3
1,184,150	-				-0.9
1,184,150	-				+0.6
1,184,150	-				+0.9
1,184,151	+				+0.7
1,184,151	+				+1.5
1,184,151	+				+0.3
1,184,151	+				-0.3
1,184,151	+				-0.2
1,184,151	+				+0.4
1,184,151	+				-1.9
1,184,151	+				-1.1
1,184,151	+				-0.4
1,184,151	+				+0.1
1,184,151	+				+0.6
1,184,152	-				+0.7
1,184,152	-				+1.0
1,184,152	-				-1.0
1,184,152	-				+1.8
1,184,152	-				-1.3
1,184,152	-				+1.1
1,184,152	-				-0.2
1,184,152	-				-1.1
1,184,152	-				-0.2
1,184,152	-				+0.0
1,184,152	-				+0.8
1,184,152	-				+0.1
1,184,152	-				+0.4
1,184,152	-				-0.2
1,184,232	+				+0.4
1,184,233	-				+1.0
1,184,248	-				+0.1
1,184,288	+				+0.1
1,184,288	+				+1.5
1,184,296	+				+1.0
1,184,296	+				-0.1
1,184,296	+				+0.0
1,184,296	+				+0.2
1,184,296	+				+1.3
1,184,296	+				-0.7
1,184,296	+				+0.3
1,184,296	+				+1.0
1,184,296	+				-0.7
1,184,296	+				+1.3
1,184,296	+				+0.3
1,184,296	+				-0.1
1,184,296	+				-0.3
1,184,296	+				-0.0
1,184,296	+				+0.8
1,184,297	-				+1.0
1,184,297	-				-0.7
1,184,297	-				-0.5
1,184,297	-				-1.5
1,184,297	-				-1.2
1,184,297	-				-0.2
1,184,297	-				+0.3
1,184,297	-				+0.8
1,184,297	-				+2.1
1,184,297	-				-1.4
1,184,297	-				+0.5
1,184,297	-				+0.5
1,184,297	-				-0.9
1,184,305	+				+0.7
1,184,305	+				-0.5
1,184,305	+				+0.5
1,184,305	+				+0.2
1,184,305	+				+0.3
1,184,305	+				-0.4
1,184,305	+				+0.8
1,184,305	+				-0.7
1,184,305	+				+0.7
1,184,305	+				+0.4
1,184,305	+				+1.7
1,184,305	+				-0.9
1,184,305	+				+0.1
1,184,305	+				+0.3
1,184,306	-				+0.4
1,184,306	-				+1.1
1,184,306	-				-1.2
1,184,306	-				+0.9
1,184,306	-				+0.8
1,184,306	-				-2.2
1,184,306	-				+0.4
1,184,348	+				+1.0
1,184,349	-				+0.8
1,184,368	+				-0.3
1,184,368	+				-0.3
1,184,386	+				-1.4
1,184,386	+				+1.3
1,184,386	+				+0.5
1,184,387	-				-1.5
1,184,453	+				-0.9
1,184,453	+				+1.4
1,184,453	+				+1.1
1,184,508	+				+0.6
1,184,508	+				-0.1
1,184,508	+				-0.6
1,184,508	+				-0.5
1,184,508	+				-0.6
1,184,508	+				-0.1
1,184,508	+				-0.3
1,184,508	+				-0.4
1,184,508	+				-0.4
1,184,508	+				+0.1
1,184,508	+				+0.5
1,184,508	+				-1.5
1,184,508	+				+0.7
1,184,508	+				+0.5
1,184,508	+				+1.6
1,184,508	+				-1.4
1,184,508	+				-0.1
1,184,508	+				-0.5
1,184,508	+				-0.9
1,184,508	+				+0.4
1,184,508	+				-0.1
1,184,508	+				-0.7
1,184,508	+				+0.8
1,184,508	+				-1.2
1,184,509	-				-0.6
1,184,509	-				+0.8
1,184,509	-				+0.4
1,184,509	-				-0.7
1,184,509	-				+0.2
1,184,509	-				-0.5
1,184,509	-				+0.8
1,184,509	-				+0.3
1,184,509	-				+0.1
1,184,509	-				+0.4
1,184,509	-				-0.5
1,184,509	-				+0.4
1,184,509	-				-1.4
1,184,509	-				-0.7
1,184,509	-				+0.3
1,184,509	-				+0.8
1,184,509	-				-0.0
1,184,509	-				-0.0
1,184,509	-				-0.4
1,184,509	-				-0.1
1,184,509	-				+0.3
1,184,509	-				+0.7
1,184,509	-				+0.3
1,184,509	-				-0.9
1,184,509	-				+1.4
1,184,642	+		PFLU_RS05315	0.21	+0.3
1,184,888	+		PFLU_RS05315	0.46	+1.9
1,184,888	+		PFLU_RS05315	0.46	-0.4
1,184,888	+		PFLU_RS05315	0.46	-0.0
1,184,889	-		PFLU_RS05315	0.46	+1.6
1,184,889	-		PFLU_RS05315	0.46	+0.4
1,184,889	-		PFLU_RS05315	0.46	-0.3
1,184,939	+		PFLU_RS05315	0.51	+0.7
1,185,047	+		PFLU_RS05315	0.62	-0.6