Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04895

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,093,831	+		PFLU_RS04890	0.42	-0.2
1,093,849	+		PFLU_RS04890	0.43	+0.2
1,093,849	+		PFLU_RS04890	0.43	+0.4
1,093,849	+		PFLU_RS04890	0.43	+1.4
1,093,850	-		PFLU_RS04890	0.43	+0.1
1,093,850	-		PFLU_RS04890	0.43	-2.1
1,093,850	-		PFLU_RS04890	0.43	+1.0
1,093,850	-		PFLU_RS04890	0.43	+0.4
1,093,850	-		PFLU_RS04890	0.43	+1.2
1,093,850	-		PFLU_RS04890	0.43	+0.5
1,093,850	-		PFLU_RS04890	0.43	-0.0
1,093,853	+		PFLU_RS04890	0.44	+0.3
1,093,853	+		PFLU_RS04890	0.44	-1.2
1,093,853	+		PFLU_RS04890	0.44	-0.2
1,093,854	-		PFLU_RS04890	0.44	-2.0
1,093,854	-		PFLU_RS04890	0.44	+0.3
1,093,885	+		PFLU_RS04890	0.46	-1.0
1,093,891	+		PFLU_RS04890	0.46	+0.2
1,093,891	+		PFLU_RS04890	0.46	+1.0
1,093,891	+		PFLU_RS04890	0.46	-1.4
1,093,892	-		PFLU_RS04890	0.46	-3.0
1,093,991	+		PFLU_RS04890	0.52	+1.0
1,093,991	+		PFLU_RS04890	0.52	-1.3
1,093,991	+		PFLU_RS04890	0.52	+1.2
1,093,991	+		PFLU_RS04890	0.52	-0.5
1,093,991	+		PFLU_RS04890	0.52	-0.4
1,093,992	-		PFLU_RS04890	0.52	+0.1
1,094,009	+		PFLU_RS04890	0.53	+0.2
1,094,009	+		PFLU_RS04890	0.53	+0.1
1,094,010	-		PFLU_RS04890	0.53	-0.3
1,094,010	-		PFLU_RS04890	0.53	+1.0
1,094,010	-		PFLU_RS04890	0.53	+0.8
1,094,010	-		PFLU_RS04890	0.53	-1.1
1,094,010	-		PFLU_RS04890	0.53	+1.1
1,094,010	-		PFLU_RS04890	0.53	-0.4
1,094,053	+		PFLU_RS04890	0.56	+0.8
1,094,053	+		PFLU_RS04890	0.56	-0.0
1,094,053	+		PFLU_RS04890	0.56	+0.3
1,094,053	+		PFLU_RS04890	0.56	-0.2
1,094,053	+		PFLU_RS04890	0.56	-0.0
1,094,053	+		PFLU_RS04890	0.56	-0.4
1,094,053	+		PFLU_RS04890	0.56	-1.8
1,094,053	+		PFLU_RS04890	0.56	+0.5
1,094,053	+		PFLU_RS04890	0.56	+0.2
1,094,054	-		PFLU_RS04890	0.56	+0.3
1,094,054	-		PFLU_RS04890	0.56	+0.7
1,094,054	-		PFLU_RS04890	0.56	+0.4
1,094,054	-		PFLU_RS04890	0.56	-0.4
1,094,110	+		PFLU_RS04890	0.60	-0.3
1,094,111	-		PFLU_RS04890	0.60	+3.2
1,094,111	-		PFLU_RS04890	0.60	-0.4
1,094,314	+		PFLU_RS04890	0.73	+0.1
1,094,321	+		PFLU_RS04890	0.73	-0.4
1,094,322	-		PFLU_RS04890	0.73	+1.2
1,094,356	+		PFLU_RS04890	0.75	+0.5
1,094,356	+		PFLU_RS04890	0.75	+0.7
1,094,531	-		PFLU_RS04890	0.86	+0.6
1,094,599	+				-0.0
1,094,599	+				-0.6
1,094,599	+				-0.1
1,094,600	-				-0.2
1,094,600	-				-1.2
1,094,600	-				-1.1
1,094,790	+				-0.6
1,094,790	+				+1.1
1,094,790	+				+1.3
1,094,790	+				-1.1
1,094,790	+				+1.0
1,094,790	+				-2.9
1,094,791	-				+0.2
1,094,791	-				+0.7
1,094,791	-				-2.4
1,094,812	-				-0.0
1,094,913	+		PFLU_RS04895	0.11	-0.7
1,094,913	+		PFLU_RS04895	0.11	-0.0
1,094,913	+		PFLU_RS04895	0.11	+0.0
1,094,914	-		PFLU_RS04895	0.11	-1.9
1,095,084	+		PFLU_RS04895	0.22	-1.6
1,095,084	+		PFLU_RS04895	0.22	-0.2
1,095,085	-		PFLU_RS04895	0.23	+1.3
1,095,085	-		PFLU_RS04895	0.23	+0.0
1,095,103	-		PFLU_RS04895	0.24	-2.3
1,095,268	-		PFLU_RS04895	0.35	-1.9
1,095,435	+		PFLU_RS04895	0.46	+0.6
1,095,436	-		PFLU_RS04895	0.46	+0.2
1,095,465	+		PFLU_RS04895	0.48	-1.0
1,095,465	+		PFLU_RS04895	0.48	-0.2
1,095,466	-		PFLU_RS04895	0.48	-0.5
1,095,466	-		PFLU_RS04895	0.48	-0.2
1,095,625	-		PFLU_RS04895	0.59	-0.8
1,095,888	+		PFLU_RS04895	0.76	-0.4
1,095,889	-		PFLU_RS04895	0.77	-0.1
1,096,033	-		PFLU_RS04895	0.86	+1.3
1,096,436	+		PFLU_RS04900	0.15	-0.6
1,096,436	+		PFLU_RS04900	0.15	-0.9
1,096,436	+		PFLU_RS04900	0.15	+0.6
1,096,436	+		PFLU_RS04900	0.15	+1.2
1,096,437	-		PFLU_RS04900	0.15	-0.2
1,096,437	-		PFLU_RS04900	0.15	-1.3
1,096,437	-		PFLU_RS04900	0.15	-0.4
1,096,437	-		PFLU_RS04900	0.15	-2.1
1,096,437	-		PFLU_RS04900	0.15	-0.7
1,096,437	-		PFLU_RS04900	0.15	+0.6
1,096,437	-		PFLU_RS04900	0.15	-1.0
1,096,574	+		PFLU_RS04900	0.25	-0.2
1,096,574	+		PFLU_RS04900	0.25	+0.1
1,096,574	+		PFLU_RS04900	0.25	+1.5
1,096,586	+		PFLU_RS04900	0.26	-0.0
1,096,601	+		PFLU_RS04900	0.27	-1.0
1,096,601	+		PFLU_RS04900	0.27	-0.2
1,096,601	+		PFLU_RS04900	0.27	-1.3
1,096,601	+		PFLU_RS04900	0.27	+0.7
1,096,602	-		PFLU_RS04900	0.27	+0.6
1,096,602	-		PFLU_RS04900	0.27	+0.7
1,096,604	+		PFLU_RS04900	0.27	-1.2
1,096,605	-		PFLU_RS04900	0.27	+1.0
1,096,689	-		PFLU_RS04900	0.33	+0.3
1,096,691	+		PFLU_RS04900	0.33	-0.3
1,096,691	+		PFLU_RS04900	0.33	+0.2
1,096,692	-		PFLU_RS04900	0.33	+0.4
1,096,751	+		PFLU_RS04900	0.37	+0.1
1,096,751	+		PFLU_RS04900	0.37	+1.0
1,096,751	+		PFLU_RS04900	0.37	+1.3
1,096,751	+		PFLU_RS04900	0.37	-0.6
1,096,751	+		PFLU_RS04900	0.37	-0.3
1,096,751	+		PFLU_RS04900	0.37	-0.2
1,096,751	+		PFLU_RS04900	0.37	+1.2
1,096,794	-		PFLU_RS04900	0.41	+0.0
1,096,794	-		PFLU_RS04900	0.41	-1.2
1,096,794	-		PFLU_RS04900	0.41	+1.7
1,096,913	-		PFLU_RS04900	0.49	+0.3
1,096,913	-		PFLU_RS04900	0.49	+0.8
1,097,013	-		PFLU_RS04900	0.56	-0.0
1,097,033	+		PFLU_RS04900	0.58	+0.1
1,097,033	+		PFLU_RS04900	0.58	-0.9
1,097,033	+		PFLU_RS04900	0.58	+1.1
1,097,034	-		PFLU_RS04900	0.58	-0.0
1,097,064	+		PFLU_RS04900	0.60	-0.1
1,097,064	+		PFLU_RS04900	0.60	-0.0
1,097,099	+		PFLU_RS04900	0.63	+1.6
1,097,099	+		PFLU_RS04900	0.63	-1.2
1,097,099	+		PFLU_RS04900	0.63	-0.9
1,097,099	+		PFLU_RS04900	0.63	-0.4
1,097,099	+		PFLU_RS04900	0.63	+0.6
1,097,099	+		PFLU_RS04900	0.63	-0.2
1,097,099	+		PFLU_RS04900	0.63	+1.0
1,097,100	-		PFLU_RS04900	0.63	+0.8
1,097,100	-		PFLU_RS04900	0.63	+0.3
1,097,100	-		PFLU_RS04900	0.63	+0.9
1,097,100	-		PFLU_RS04900	0.63	-0.9
1,097,117	+		PFLU_RS04900	0.64	+1.8
1,097,118	-		PFLU_RS04900	0.64	-1.2
1,097,222	+		PFLU_RS04900	0.72	-0.1
1,097,222	+		PFLU_RS04900	0.72	+1.0
1,097,222	+		PFLU_RS04900	0.72	+1.1
1,097,223	-		PFLU_RS04900	0.72	+0.2
1,097,223	-		PFLU_RS04900	0.72	-0.7