Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04345

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04340 and PFLU_RS04345 are separated by 45 nucleotidesPFLU_RS04345 and PFLU_RS04350 are separated by 108 nucleotides PFLU_RS04340: PFLU_RS04340 - metalloprotease TldD, at 981,852 to 983,294 _RS04340 PFLU_RS04345: PFLU_RS04345 - ribosome-associated protein, at 983,340 to 983,861 _RS04345 PFLU_RS04350: PFLU_RS04350 - metalloprotease PmbA, at 983,970 to 985,316 _RS04350 Position (kb) 983 984Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 982.486 kb on - strand, within PFLU_RS04340at 982.491 kb on + strand, within PFLU_RS04340at 982.491 kb on + strand, within PFLU_RS04340at 982.492 kb on - strand, within PFLU_RS04340at 982.492 kb on - strand, within PFLU_RS04340at 982.521 kb on + strand, within PFLU_RS04340at 982.839 kb on + strand, within PFLU_RS04340at 982.839 kb on + strand, within PFLU_RS04340at 982.839 kb on + strand, within PFLU_RS04340at 982.839 kb on + strand, within PFLU_RS04340at 982.839 kb on + strand, within PFLU_RS04340at 982.839 kb on + strand, within PFLU_RS04340at 982.840 kb on - strand, within PFLU_RS04340at 982.840 kb on - strand, within PFLU_RS04340at 982.840 kb on - strand, within PFLU_RS04340at 982.840 kb on - strand, within PFLU_RS04340at 982.840 kb on - strand, within PFLU_RS04340at 982.840 kb on - strand, within PFLU_RS04340at 982.840 kb on - strand, within PFLU_RS04340at 982.840 kb on - strand, within PFLU_RS04340at 982.908 kb on + strand, within PFLU_RS04340at 982.908 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.944 kb on + strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 982.945 kb on - strand, within PFLU_RS04340at 983.004 kb on + strand, within PFLU_RS04340at 983.004 kb on + strand, within PFLU_RS04340at 983.004 kb on + strand, within PFLU_RS04340at 983.004 kb on + strand, within PFLU_RS04340at 983.004 kb on + strand, within PFLU_RS04340at 983.004 kb on + strand, within PFLU_RS04340at 983.004 kb on + strand, within PFLU_RS04340at 983.004 kb on + strand, within PFLU_RS04340at 983.005 kb on - strand, within PFLU_RS04340at 983.005 kb on - strand, within PFLU_RS04340at 983.005 kb on - strand, within PFLU_RS04340at 983.005 kb on - strand, within PFLU_RS04340at 983.005 kb on - strand, within PFLU_RS04340at 983.005 kb on - strand, within PFLU_RS04340at 983.005 kb on - strand, within PFLU_RS04340at 983.076 kb on + strand, within PFLU_RS04340at 983.077 kb on - strand, within PFLU_RS04340at 983.077 kb on - strand, within PFLU_RS04340at 983.077 kb on - strand, within PFLU_RS04340at 983.077 kb on - strand, within PFLU_RS04340at 983.201 kb on + strandat 983.202 kb on - strandat 983.202 kb on - strandat 983.202 kb on - strandat 983.292 kb on + strandat 983.292 kb on + strandat 983.293 kb on - strandat 983.380 kb on + strandat 983.380 kb on + strandat 983.380 kb on + strandat 983.380 kb on + strandat 983.380 kb on + strandat 983.380 kb on + strandat 983.380 kb on + strandat 983.380 kb on + strandat 983.380 kb on + strandat 983.381 kb on - strandat 983.381 kb on - strandat 983.381 kb on - strandat 983.381 kb on - strandat 983.393 kb on + strand, within PFLU_RS04345at 983.417 kb on + strand, within PFLU_RS04345at 983.417 kb on + strand, within PFLU_RS04345at 983.418 kb on - strand, within PFLU_RS04345at 983.569 kb on + strand, within PFLU_RS04345at 983.569 kb on + strand, within PFLU_RS04345at 983.570 kb on - strand, within PFLU_RS04345at 983.675 kb on + strand, within PFLU_RS04345at 983.765 kb on + strand, within PFLU_RS04345at 983.765 kb on + strand, within PFLU_RS04345at 983.765 kb on + strand, within PFLU_RS04345at 983.765 kb on + strand, within PFLU_RS04345at 983.765 kb on + strand, within PFLU_RS04345at 983.765 kb on + strand, within PFLU_RS04345at 983.766 kb on - strand, within PFLU_RS04345at 983.766 kb on - strand, within PFLU_RS04345at 983.766 kb on - strand, within PFLU_RS04345at 983.766 kb on - strand, within PFLU_RS04345at 983.766 kb on - strand, within PFLU_RS04345at 983.766 kb on - strand, within PFLU_RS04345at 983.848 kb on + strandat 983.848 kb on + strandat 983.848 kb on + strandat 983.849 kb on - strandat 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.174 kb on + strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.175 kb on - strand, within PFLU_RS04350at 984.203 kb on + strand, within PFLU_RS04350at 984.203 kb on + strand, within PFLU_RS04350at 984.204 kb on - strand, within PFLU_RS04350at 984.477 kb on + strand, within PFLU_RS04350at 984.524 kb on + strand, within PFLU_RS04350at 984.525 kb on - strand, within PFLU_RS04350at 984.525 kb on - strand, within PFLU_RS04350at 984.582 kb on + strand, within PFLU_RS04350at 984.583 kb on - strand, within PFLU_RS04350at 984.730 kb on + strand, within PFLU_RS04350at 984.730 kb on + strand, within PFLU_RS04350at 984.730 kb on + strand, within PFLU_RS04350at 984.730 kb on + strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350at 984.731 kb on - strand, within PFLU_RS04350

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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982,486 - PFLU_RS04340 0.44 -0.9
982,491 + PFLU_RS04340 0.44 +0.5
982,491 + PFLU_RS04340 0.44 -1.0
982,492 - PFLU_RS04340 0.44 -0.4
982,492 - PFLU_RS04340 0.44 +0.5
982,521 + PFLU_RS04340 0.46 -0.8
982,839 + PFLU_RS04340 0.68 +0.3
982,839 + PFLU_RS04340 0.68 +1.0
982,839 + PFLU_RS04340 0.68 +0.1
982,839 + PFLU_RS04340 0.68 +1.7
982,839 + PFLU_RS04340 0.68 -0.1
982,839 + PFLU_RS04340 0.68 +0.6
982,840 - PFLU_RS04340 0.68 +0.4
982,840 - PFLU_RS04340 0.68 -0.1
982,840 - PFLU_RS04340 0.68 +2.9
982,840 - PFLU_RS04340 0.68 +0.5
982,840 - PFLU_RS04340 0.68 +0.2
982,840 - PFLU_RS04340 0.68 -0.2
982,840 - PFLU_RS04340 0.68 +0.3
982,840 - PFLU_RS04340 0.68 +1.0
982,908 + PFLU_RS04340 0.73 +0.1
982,908 + PFLU_RS04340 0.73 -3.1
982,944 + PFLU_RS04340 0.76 -0.1
982,944 + PFLU_RS04340 0.76 -0.1
982,944 + PFLU_RS04340 0.76 +0.4
982,944 + PFLU_RS04340 0.76 +1.2
982,944 + PFLU_RS04340 0.76 -0.5
982,944 + PFLU_RS04340 0.76 +1.4
982,944 + PFLU_RS04340 0.76 +0.2
982,944 + PFLU_RS04340 0.76 -0.5
982,944 + PFLU_RS04340 0.76 +1.0
982,944 + PFLU_RS04340 0.76 +2.3
982,944 + PFLU_RS04340 0.76 +0.3
982,944 + PFLU_RS04340 0.76 +0.2
982,944 + PFLU_RS04340 0.76 +0.8
982,944 + PFLU_RS04340 0.76 +0.4
982,944 + PFLU_RS04340 0.76 -1.1
982,944 + PFLU_RS04340 0.76 +0.2
982,944 + PFLU_RS04340 0.76 -0.3
982,944 + PFLU_RS04340 0.76 +1.2
982,944 + PFLU_RS04340 0.76 +1.0
982,945 - PFLU_RS04340 0.76 -0.3
982,945 - PFLU_RS04340 0.76 +0.6
982,945 - PFLU_RS04340 0.76 +0.9
982,945 - PFLU_RS04340 0.76 +1.5
982,945 - PFLU_RS04340 0.76 +1.7
982,945 - PFLU_RS04340 0.76 +0.5
982,945 - PFLU_RS04340 0.76 +0.7
982,945 - PFLU_RS04340 0.76 -0.7
982,945 - PFLU_RS04340 0.76 +0.7
982,945 - PFLU_RS04340 0.76 +1.1
982,945 - PFLU_RS04340 0.76 -1.1
982,945 - PFLU_RS04340 0.76 +0.5
982,945 - PFLU_RS04340 0.76 -0.5
982,945 - PFLU_RS04340 0.76 +0.4
982,945 - PFLU_RS04340 0.76 +0.5
983,004 + PFLU_RS04340 0.80 +1.0
983,004 + PFLU_RS04340 0.80 +0.7
983,004 + PFLU_RS04340 0.80 +0.6
983,004 + PFLU_RS04340 0.80 -0.4
983,004 + PFLU_RS04340 0.80 +0.9
983,004 + PFLU_RS04340 0.80 -0.3
983,004 + PFLU_RS04340 0.80 +0.9
983,004 + PFLU_RS04340 0.80 -0.1
983,005 - PFLU_RS04340 0.80 +0.3
983,005 - PFLU_RS04340 0.80 +0.6
983,005 - PFLU_RS04340 0.80 +0.0
983,005 - PFLU_RS04340 0.80 -0.8
983,005 - PFLU_RS04340 0.80 +1.0
983,005 - PFLU_RS04340 0.80 -0.5
983,005 - PFLU_RS04340 0.80 +1.1
983,076 + PFLU_RS04340 0.85 -0.6
983,077 - PFLU_RS04340 0.85 +2.3
983,077 - PFLU_RS04340 0.85 +0.2
983,077 - PFLU_RS04340 0.85 +0.2
983,077 - PFLU_RS04340 0.85 +0.1
983,201 + -0.8
983,202 - +1.6
983,202 - -1.4
983,202 - +0.5
983,292 + -1.1
983,292 + -1.2
983,293 - -1.1
983,380 + +0.2
983,380 + -0.2
983,380 + +0.6
983,380 + -0.8
983,380 + +0.8
983,380 + +0.3
983,380 + +1.6
983,380 + -0.8
983,380 + +1.4
983,381 - -1.4
983,381 - +0.1
983,381 - -0.4
983,381 - +0.2
983,393 + PFLU_RS04345 0.10 +0.3
983,417 + PFLU_RS04345 0.15 -1.1
983,417 + PFLU_RS04345 0.15 +0.8
983,418 - PFLU_RS04345 0.15 +0.6
983,569 + PFLU_RS04345 0.44 +0.6
983,569 + PFLU_RS04345 0.44 +0.0
983,570 - PFLU_RS04345 0.44 -0.4
983,675 + PFLU_RS04345 0.64 -0.1
983,765 + PFLU_RS04345 0.81 -0.8
983,765 + PFLU_RS04345 0.81 +0.0
983,765 + PFLU_RS04345 0.81 +1.3
983,765 + PFLU_RS04345 0.81 -0.8
983,765 + PFLU_RS04345 0.81 -0.3
983,765 + PFLU_RS04345 0.81 -0.7
983,766 - PFLU_RS04345 0.82 +0.9
983,766 - PFLU_RS04345 0.82 -0.1
983,766 - PFLU_RS04345 0.82 +0.6
983,766 - PFLU_RS04345 0.82 +1.1
983,766 - PFLU_RS04345 0.82 +0.8
983,766 - PFLU_RS04345 0.82 -1.2
983,848 + +0.2
983,848 + -1.1
983,848 + +0.8
983,849 - -1.4
984,174 + PFLU_RS04350 0.15 +1.0
984,174 + PFLU_RS04350 0.15 +1.0
984,174 + PFLU_RS04350 0.15 -0.2
984,174 + PFLU_RS04350 0.15 +0.6
984,174 + PFLU_RS04350 0.15 +0.9
984,174 + PFLU_RS04350 0.15 +0.4
984,174 + PFLU_RS04350 0.15 +0.2
984,174 + PFLU_RS04350 0.15 +0.3
984,174 + PFLU_RS04350 0.15 +1.2
984,174 + PFLU_RS04350 0.15 -0.3
984,174 + PFLU_RS04350 0.15 -0.1
984,174 + PFLU_RS04350 0.15 +0.1
984,174 + PFLU_RS04350 0.15 -1.0
984,174 + PFLU_RS04350 0.15 +0.7
984,174 + PFLU_RS04350 0.15 +0.5
984,174 + PFLU_RS04350 0.15 +0.8
984,174 + PFLU_RS04350 0.15 +1.2
984,174 + PFLU_RS04350 0.15 -0.4
984,174 + PFLU_RS04350 0.15 -0.6
984,174 + PFLU_RS04350 0.15 +0.6
984,174 + PFLU_RS04350 0.15 +1.7
984,174 + PFLU_RS04350 0.15 +1.1
984,174 + PFLU_RS04350 0.15 -0.7
984,174 + PFLU_RS04350 0.15 +0.6
984,175 - PFLU_RS04350 0.15 -0.1
984,175 - PFLU_RS04350 0.15 -0.0
984,175 - PFLU_RS04350 0.15 +0.2
984,175 - PFLU_RS04350 0.15 -0.4
984,175 - PFLU_RS04350 0.15 -0.9
984,175 - PFLU_RS04350 0.15 -1.6
984,175 - PFLU_RS04350 0.15 +1.0
984,175 - PFLU_RS04350 0.15 +1.0
984,175 - PFLU_RS04350 0.15 +1.3
984,175 - PFLU_RS04350 0.15 +0.8
984,175 - PFLU_RS04350 0.15 -0.3
984,175 - PFLU_RS04350 0.15 +0.3
984,175 - PFLU_RS04350 0.15 +0.4
984,175 - PFLU_RS04350 0.15 +1.5
984,203 + PFLU_RS04350 0.17 +1.0
984,203 + PFLU_RS04350 0.17 -0.4
984,204 - PFLU_RS04350 0.17 +1.4
984,477 + PFLU_RS04350 0.38 -0.2
984,524 + PFLU_RS04350 0.41 -0.9
984,525 - PFLU_RS04350 0.41 -0.8
984,525 - PFLU_RS04350 0.41 +1.3
984,582 + PFLU_RS04350 0.45 -0.0
984,583 - PFLU_RS04350 0.46 +1.0
984,730 + PFLU_RS04350 0.56 -0.8
984,730 + PFLU_RS04350 0.56 -0.0
984,730 + PFLU_RS04350 0.56 +0.2
984,730 + PFLU_RS04350 0.56 -0.6
984,731 - PFLU_RS04350 0.56 +0.9
984,731 - PFLU_RS04350 0.56 +2.9
984,731 - PFLU_RS04350 0.56 -2.3
984,731 - PFLU_RS04350 0.56 +0.7
984,731 - PFLU_RS04350 0.56 +0.0
984,731 - PFLU_RS04350 0.56 -1.3
984,731 - PFLU_RS04350 0.56 +1.5
984,731 - PFLU_RS04350 0.56 -0.3

Or see this region's nucleotide sequence