Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS04315

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04310 and PFLU_RS04315 overlap by 1 nucleotidesPFLU_RS04315 and PFLU_RS04320 are separated by 51 nucleotidesPFLU_RS04320 and PFLU_RS04325 are separated by 70 nucleotides PFLU_RS04310: PFLU_RS04310 - rod shape-determining protein MreC, at 973,309 to 974,382 _RS04310 PFLU_RS04315: PFLU_RS04315 - rod shape-determining protein MreD, at 974,382 to 974,870 _RS04315 PFLU_RS04320: PFLU_RS04320 - septum formation inhibitor Maf, at 974,922 to 975,518 _RS04320 PFLU_RS04325: PFLU_RS04325 - ribonuclease G, at 975,589 to 977,046 _RS04325 Position (kb) 974 975Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 974.334 kb on + strandat 974.380 kb on + strandat 974.380 kb on + strandat 974.381 kb on - strandat 974.381 kb on - strandat 974.381 kb on - strandat 974.381 kb on - strandat 974.391 kb on - strandat 974.546 kb on + strand, within PFLU_RS04315at 974.589 kb on + strand, within PFLU_RS04315at 974.589 kb on + strand, within PFLU_RS04315at 974.589 kb on + strand, within PFLU_RS04315at 974.589 kb on + strand, within PFLU_RS04315at 974.590 kb on - strand, within PFLU_RS04315at 974.857 kb on - strandat 974.858 kb on + strandat 974.859 kb on - strandat 974.859 kb on - strandat 974.905 kb on + strandat 974.905 kb on + strandat 974.905 kb on + strandat 974.905 kb on + strandat 974.905 kb on + strandat 974.906 kb on - strandat 974.934 kb on + strandat 974.934 kb on + strandat 975.029 kb on + strand, within PFLU_RS04320at 975.029 kb on + strand, within PFLU_RS04320at 975.029 kb on + strand, within PFLU_RS04320at 975.029 kb on + strand, within PFLU_RS04320at 975.030 kb on - strand, within PFLU_RS04320at 975.030 kb on - strand, within PFLU_RS04320at 975.030 kb on - strand, within PFLU_RS04320at 975.030 kb on - strand, within PFLU_RS04320at 975.030 kb on - strand, within PFLU_RS04320at 975.030 kb on - strand, within PFLU_RS04320at 975.052 kb on - strand, within PFLU_RS04320at 975.052 kb on - strand, within PFLU_RS04320at 975.329 kb on + strand, within PFLU_RS04320at 975.329 kb on + strand, within PFLU_RS04320at 975.329 kb on + strand, within PFLU_RS04320at 975.329 kb on + strand, within PFLU_RS04320at 975.329 kb on + strand, within PFLU_RS04320at 975.329 kb on + strand, within PFLU_RS04320at 975.330 kb on - strand, within PFLU_RS04320at 975.330 kb on - strand, within PFLU_RS04320at 975.336 kb on + strand, within PFLU_RS04320at 975.336 kb on + strand, within PFLU_RS04320at 975.336 kb on + strand, within PFLU_RS04320at 975.336 kb on + strand, within PFLU_RS04320at 975.336 kb on + strand, within PFLU_RS04320at 975.337 kb on - strand, within PFLU_RS04320at 975.337 kb on - strand, within PFLU_RS04320at 975.337 kb on - strand, within PFLU_RS04320at 975.381 kb on - strand, within PFLU_RS04320at 975.426 kb on + strand, within PFLU_RS04320at 975.426 kb on + strand, within PFLU_RS04320at 975.426 kb on + strand, within PFLU_RS04320at 975.426 kb on + strand, within PFLU_RS04320at 975.427 kb on - strand, within PFLU_RS04320at 975.427 kb on - strand, within PFLU_RS04320at 975.427 kb on - strand, within PFLU_RS04320at 975.427 kb on - strand, within PFLU_RS04320at 975.440 kb on - strand, within PFLU_RS04320at 975.487 kb on + strandat 975.487 kb on + strandat 975.488 kb on - strandat 975.543 kb on + strandat 975.543 kb on + strandat 975.543 kb on + strandat 975.544 kb on - strandat 975.558 kb on + strandat 975.558 kb on + strandat 975.559 kb on - strandat 975.559 kb on - strandat 975.559 kb on - strandat 975.559 kb on - strandat 975.559 kb on - strandat 975.559 kb on - strandat 975.559 kb on - strandat 975.559 kb on - strandat 975.612 kb on + strandat 975.613 kb on - strandat 975.613 kb on - strandat 975.613 kb on - strandat 975.613 kb on - strandat 975.613 kb on - strandat 975.613 kb on - strandat 975.613 kb on - strandat 975.645 kb on - strandat 975.645 kb on - strandat 975.708 kb on + strandat 975.708 kb on + strandat 975.709 kb on - strandat 975.709 kb on - strandat 975.709 kb on - strandat 975.709 kb on - strandat 975.712 kb on + strandat 975.712 kb on + strandat 975.712 kb on + strandat 975.712 kb on + strandat 975.712 kb on + strandat 975.712 kb on + strandat 975.713 kb on - strandat 975.713 kb on - strandat 975.713 kb on - strandat 975.713 kb on - strandat 975.713 kb on - strandat 975.735 kb on - strand, within PFLU_RS04325

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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974,334 + +0.4
974,380 + +0.2
974,380 + -0.4
974,381 - -1.4
974,381 - -2.6
974,381 - -1.0
974,381 - -2.4
974,391 - -0.6
974,546 + PFLU_RS04315 0.34 -1.3
974,589 + PFLU_RS04315 0.42 +0.2
974,589 + PFLU_RS04315 0.42 -2.7
974,589 + PFLU_RS04315 0.42 -2.0
974,589 + PFLU_RS04315 0.42 -2.3
974,590 - PFLU_RS04315 0.43 -1.9
974,857 - -0.4
974,858 + +1.1
974,859 - +0.1
974,859 - +1.0
974,905 + -1.3
974,905 + -0.4
974,905 + -0.0
974,905 + -0.5
974,905 + -1.0
974,906 - +0.9
974,934 + +1.0
974,934 + -0.5
975,029 + PFLU_RS04320 0.18 +0.4
975,029 + PFLU_RS04320 0.18 -0.5
975,029 + PFLU_RS04320 0.18 +0.3
975,029 + PFLU_RS04320 0.18 -0.3
975,030 - PFLU_RS04320 0.18 +0.5
975,030 - PFLU_RS04320 0.18 +0.8
975,030 - PFLU_RS04320 0.18 +0.4
975,030 - PFLU_RS04320 0.18 -0.2
975,030 - PFLU_RS04320 0.18 -0.2
975,030 - PFLU_RS04320 0.18 -1.2
975,052 - PFLU_RS04320 0.22 +0.3
975,052 - PFLU_RS04320 0.22 +0.4
975,329 + PFLU_RS04320 0.68 +0.4
975,329 + PFLU_RS04320 0.68 -0.7
975,329 + PFLU_RS04320 0.68 -0.6
975,329 + PFLU_RS04320 0.68 -0.9
975,329 + PFLU_RS04320 0.68 -1.3
975,329 + PFLU_RS04320 0.68 -0.1
975,330 - PFLU_RS04320 0.68 -0.1
975,330 - PFLU_RS04320 0.68 -1.4
975,336 + PFLU_RS04320 0.69 -0.1
975,336 + PFLU_RS04320 0.69 -2.0
975,336 + PFLU_RS04320 0.69 -2.3
975,336 + PFLU_RS04320 0.69 +0.1
975,336 + PFLU_RS04320 0.69 -1.9
975,337 - PFLU_RS04320 0.70 -1.6
975,337 - PFLU_RS04320 0.70 +0.6
975,337 - PFLU_RS04320 0.70 -0.5
975,381 - PFLU_RS04320 0.77 +0.3
975,426 + PFLU_RS04320 0.84 -1.8
975,426 + PFLU_RS04320 0.84 -0.3
975,426 + PFLU_RS04320 0.84 -1.6
975,426 + PFLU_RS04320 0.84 +1.9
975,427 - PFLU_RS04320 0.85 -0.5
975,427 - PFLU_RS04320 0.85 -0.8
975,427 - PFLU_RS04320 0.85 +1.6
975,427 - PFLU_RS04320 0.85 +0.1
975,440 - PFLU_RS04320 0.87 +1.2
975,487 + -0.5
975,487 + +0.9
975,488 - +0.5
975,543 + +1.4
975,543 + -2.9
975,543 + +0.7
975,544 - -0.0
975,558 + -1.0
975,558 + +0.1
975,559 - +1.2
975,559 - -0.8
975,559 - -0.8
975,559 - -0.6
975,559 - -0.4
975,559 - +1.6
975,559 - -0.4
975,559 - -0.0
975,612 + -1.7
975,613 - -0.3
975,613 - +0.4
975,613 - -3.4
975,613 - -0.3
975,613 - -2.9
975,613 - -1.4
975,613 - -0.8
975,645 - -2.6
975,645 - -1.7
975,708 + -1.4
975,708 + -1.5
975,709 - -0.4
975,709 - -1.2
975,709 - -2.1
975,709 - +0.3
975,712 + -2.7
975,712 + +0.5
975,712 + -0.4
975,712 + -0.3
975,712 + -1.0
975,712 + +1.2
975,713 - -1.7
975,713 - -1.7
975,713 - -0.4
975,713 - +0.3
975,713 - -0.4
975,735 - PFLU_RS04325 0.10 -3.1

Or see this region's nucleotide sequence