Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03545 and PFLU_RS03550 overlap by 4 nucleotides PFLU_RS03550 and PFLU_RS03555 are separated by 7 nucleotides PFLU_RS03555 and PFLU_RS03560 are separated by 10 nucleotides PFLU_RS03560 and PFLU_RS03565 overlap by 4 nucleotides
PFLU_RS03545: PFLU_RS03545 - type III secretion protein, at 819,381 to 820,394
_RS03545
PFLU_RS03550: PFLU_RS03550 - EscR/YscR/HrcR family type III secretion system export apparatus protein, at 820,391 to 821,044
_RS03550
PFLU_RS03555: PFLU_RS03555 - EscS/YscS/HrcS family type III secretion system export apparatus protein, at 821,052 to 821,315
_RS03555
PFLU_RS03560: PFLU_RS03560 - EscT/YscT/HrcT family type III secretion system export apparatus protein, at 821,326 to 822,114
_RS03560
PFLU_RS03565: PFLU_RS03565 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 822,111 to 823,208
_RS03565
Position (kb) 821
822 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 820.070 kb on + strand, within PFLU_RS03545 at 820.070 kb on + strand, within PFLU_RS03545 at 820.071 kb on - strand, within PFLU_RS03545 at 820.071 kb on - strand, within PFLU_RS03545 at 820.071 kb on - strand, within PFLU_RS03545 at 820.071 kb on - strand, within PFLU_RS03545 at 820.156 kb on + strand, within PFLU_RS03545 at 820.157 kb on - strand, within PFLU_RS03545 at 820.202 kb on - strand, within PFLU_RS03545 at 820.202 kb on - strand, within PFLU_RS03545 at 820.303 kb on - strand at 820.319 kb on + strand at 820.319 kb on + strand at 820.416 kb on + strand at 820.416 kb on + strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.417 kb on - strand at 820.461 kb on + strand, within PFLU_RS03550 at 820.461 kb on + strand, within PFLU_RS03550 at 820.461 kb on + strand, within PFLU_RS03550 at 820.462 kb on - strand, within PFLU_RS03550 at 820.462 kb on - strand, within PFLU_RS03550 at 820.584 kb on + strand, within PFLU_RS03550 at 820.584 kb on + strand, within PFLU_RS03550 at 820.585 kb on - strand, within PFLU_RS03550 at 820.585 kb on - strand, within PFLU_RS03550 at 820.588 kb on + strand, within PFLU_RS03550 at 820.588 kb on + strand, within PFLU_RS03550 at 820.589 kb on - strand, within PFLU_RS03550 at 820.589 kb on - strand, within PFLU_RS03550 at 820.589 kb on - strand, within PFLU_RS03550 at 820.589 kb on - strand, within PFLU_RS03550 at 820.589 kb on - strand, within PFLU_RS03550 at 820.589 kb on - strand, within PFLU_RS03550 at 820.589 kb on - strand, within PFLU_RS03550 at 820.589 kb on - strand, within PFLU_RS03550 at 820.607 kb on + strand, within PFLU_RS03550 at 820.607 kb on + strand, within PFLU_RS03550 at 820.608 kb on - strand, within PFLU_RS03550 at 820.863 kb on + strand, within PFLU_RS03550 at 820.863 kb on + strand, within PFLU_RS03550 at 820.864 kb on - strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.877 kb on + strand, within PFLU_RS03550 at 820.878 kb on - strand, within PFLU_RS03550 at 820.878 kb on - strand, within PFLU_RS03550 at 820.878 kb on - strand, within PFLU_RS03550 at 820.878 kb on - strand, within PFLU_RS03550 at 821.037 kb on - strand at 821.037 kb on - strand at 821.037 kb on - strand at 821.051 kb on + strand at 821.051 kb on + strand at 821.051 kb on + strand at 821.052 kb on - strand at 821.065 kb on + strand at 821.065 kb on + strand at 821.065 kb on + strand at 821.065 kb on + strand at 821.065 kb on + strand at 821.066 kb on - strand at 821.067 kb on - strand at 821.248 kb on + strand, within PFLU_RS03555 at 821.335 kb on + strand at 821.336 kb on - strand at 821.344 kb on + strand at 821.344 kb on + strand at 821.344 kb on + strand at 821.345 kb on - strand at 821.380 kb on + strand at 821.380 kb on + strand at 821.421 kb on + strand, within PFLU_RS03560 at 821.421 kb on + strand, within PFLU_RS03560 at 821.421 kb on + strand, within PFLU_RS03560 at 821.421 kb on + strand, within PFLU_RS03560 at 821.421 kb on + strand, within PFLU_RS03560 at 821.421 kb on + strand, within PFLU_RS03560 at 821.422 kb on - strand, within PFLU_RS03560 at 821.422 kb on - strand, within PFLU_RS03560 at 821.422 kb on - strand, within PFLU_RS03560 at 821.422 kb on - strand, within PFLU_RS03560 at 821.422 kb on - strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.423 kb on + strand, within PFLU_RS03560 at 821.424 kb on - strand, within PFLU_RS03560 at 821.424 kb on - strand, within PFLU_RS03560 at 821.424 kb on - strand, within PFLU_RS03560 at 821.424 kb on - strand, within PFLU_RS03560 at 821.443 kb on - strand, within PFLU_RS03560 at 821.481 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.485 kb on + strand, within PFLU_RS03560 at 821.486 kb on - strand, within PFLU_RS03560 at 821.486 kb on - strand, within PFLU_RS03560 at 821.486 kb on - strand, within PFLU_RS03560 at 821.486 kb on - strand, within PFLU_RS03560 at 821.486 kb on - strand, within PFLU_RS03560 at 821.486 kb on - strand, within PFLU_RS03560 at 821.486 kb on - strand, within PFLU_RS03560 at 821.486 kb on - strand, within PFLU_RS03560 at 821.510 kb on - strand, within PFLU_RS03560 at 821.522 kb on + strand, within PFLU_RS03560 at 821.522 kb on + strand, within PFLU_RS03560 at 821.564 kb on + strand, within PFLU_RS03560 at 821.564 kb on + strand, within PFLU_RS03560 at 821.564 kb on + strand, within PFLU_RS03560 at 821.564 kb on + strand, within PFLU_RS03560 at 821.564 kb on + strand, within PFLU_RS03560 at 821.565 kb on - strand, within PFLU_RS03560 at 821.776 kb on + strand, within PFLU_RS03560 at 821.776 kb on + strand, within PFLU_RS03560 at 821.776 kb on + strand, within PFLU_RS03560 at 821.776 kb on + strand, within PFLU_RS03560 at 821.776 kb on + strand, within PFLU_RS03560 at 821.777 kb on - strand, within PFLU_RS03560 at 821.777 kb on - strand, within PFLU_RS03560 at 821.777 kb on - strand, within PFLU_RS03560 at 821.879 kb on - strand, within PFLU_RS03560 at 821.879 kb on - strand, within PFLU_RS03560 at 821.942 kb on - strand, within PFLU_RS03560 at 822.016 kb on + strand, within PFLU_RS03560 at 822.017 kb on - strand, within PFLU_RS03560 at 822.052 kb on - strand at 822.052 kb on - strand at 822.052 kb on - strand at 822.289 kb on + strand, within PFLU_RS03565 at 822.289 kb on + strand, within PFLU_RS03565 at 822.289 kb on + strand, within PFLU_RS03565 at 822.289 kb on + strand, within PFLU_RS03565 at 822.289 kb on + strand, within PFLU_RS03565 at 822.290 kb on - strand, within PFLU_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 820,070 + PFLU_RS03545 0.68 -0.1 820,070 + PFLU_RS03545 0.68 +0.9 820,071 - PFLU_RS03545 0.68 -0.3 820,071 - PFLU_RS03545 0.68 -0.1 820,071 - PFLU_RS03545 0.68 +0.8 820,071 - PFLU_RS03545 0.68 +0.6 820,156 + PFLU_RS03545 0.76 +1.1 820,157 - PFLU_RS03545 0.77 -0.8 820,202 - PFLU_RS03545 0.81 -0.2 820,202 - PFLU_RS03545 0.81 +0.3 820,303 - +1.2 820,319 + +0.4 820,319 + +0.1 820,416 + -0.3 820,416 + +0.2 820,417 - -0.7 820,417 - -0.2 820,417 - -0.4 820,461 + PFLU_RS03550 0.11 +1.5 820,461 + PFLU_RS03550 0.11 +0.9 820,461 + PFLU_RS03550 0.11 +1.1 820,462 - PFLU_RS03550 0.11 +0.5 820,462 - PFLU_RS03550 0.11 -0.8 820,584 + PFLU_RS03550 0.30 +0.8 820,584 + PFLU_RS03550 0.30 +0.1 820,585 - PFLU_RS03550 0.30 -0.7 820,585 - PFLU_RS03550 0.30 -0.1 820,588 + PFLU_RS03550 0.30 -0.3 820,588 + PFLU_RS03550 0.30 -0.0 820,589 - PFLU_RS03550 0.30 +0.6 820,589 - PFLU_RS03550 0.30 +0.2 820,589 - PFLU_RS03550 0.30 +0.6 820,589 - PFLU_RS03550 0.30 -0.7 820,589 - PFLU_RS03550 0.30 +0.3 820,589 - PFLU_RS03550 0.30 -0.3 820,589 - PFLU_RS03550 0.30 -0.5 820,589 - PFLU_RS03550 0.30 +0.4 820,607 + PFLU_RS03550 0.33 -1.0 820,607 + PFLU_RS03550 0.33 -0.4 820,608 - PFLU_RS03550 0.33 +0.4 820,863 + PFLU_RS03550 0.72 -1.3 820,863 + PFLU_RS03550 0.72 +0.3 820,864 - PFLU_RS03550 0.72 -0.6 820,877 + PFLU_RS03550 0.74 -0.6 820,877 + PFLU_RS03550 0.74 +0.9 820,877 + PFLU_RS03550 0.74 -1.3 820,877 + PFLU_RS03550 0.74 +0.2 820,877 + PFLU_RS03550 0.74 -0.9 820,877 + PFLU_RS03550 0.74 -0.0 820,877 + PFLU_RS03550 0.74 +0.7 820,877 + PFLU_RS03550 0.74 +0.2 820,877 + PFLU_RS03550 0.74 -0.2 820,878 - PFLU_RS03550 0.74 +1.6 820,878 - PFLU_RS03550 0.74 -0.2 820,878 - PFLU_RS03550 0.74 -0.1 820,878 - PFLU_RS03550 0.74 -0.2 821,037 - -0.2 821,037 - +0.6 821,037 - -1.7 821,051 + +0.5 821,051 + +0.1 821,051 + -2.6 821,052 - +0.1 821,065 + +1.2 821,065 + +0.0 821,065 + +1.0 821,065 + -0.6 821,065 + -1.2 821,066 - -0.1 821,067 - +1.2 821,248 + PFLU_RS03555 0.74 -1.3 821,335 + +0.1 821,336 - +2.4 821,344 + -0.1 821,344 + +0.5 821,344 + -1.1 821,345 - +0.7 821,380 + +0.2 821,380 + +1.1 821,421 + PFLU_RS03560 0.12 +0.2 821,421 + PFLU_RS03560 0.12 +1.1 821,421 + PFLU_RS03560 0.12 +0.3 821,421 + PFLU_RS03560 0.12 +1.7 821,421 + PFLU_RS03560 0.12 -1.4 821,421 + PFLU_RS03560 0.12 -0.2 821,422 - PFLU_RS03560 0.12 +0.1 821,422 - PFLU_RS03560 0.12 -1.5 821,422 - PFLU_RS03560 0.12 -1.0 821,422 - PFLU_RS03560 0.12 +0.0 821,422 - PFLU_RS03560 0.12 -0.1 821,423 + PFLU_RS03560 0.12 +0.2 821,423 + PFLU_RS03560 0.12 +0.3 821,423 + PFLU_RS03560 0.12 -0.2 821,423 + PFLU_RS03560 0.12 +0.9 821,423 + PFLU_RS03560 0.12 -0.5 821,423 + PFLU_RS03560 0.12 -0.4 821,423 + PFLU_RS03560 0.12 -0.0 821,423 + PFLU_RS03560 0.12 -0.3 821,423 + PFLU_RS03560 0.12 -1.6 821,423 + PFLU_RS03560 0.12 +0.5 821,424 - PFLU_RS03560 0.12 -1.2 821,424 - PFLU_RS03560 0.12 -1.7 821,424 - PFLU_RS03560 0.12 -1.3 821,424 - PFLU_RS03560 0.12 -1.2 821,443 - PFLU_RS03560 0.15 -0.2 821,481 + PFLU_RS03560 0.20 -0.9 821,485 + PFLU_RS03560 0.20 -0.6 821,485 + PFLU_RS03560 0.20 -0.4 821,485 + PFLU_RS03560 0.20 -0.2 821,485 + PFLU_RS03560 0.20 +0.7 821,485 + PFLU_RS03560 0.20 -1.4 821,485 + PFLU_RS03560 0.20 -0.3 821,485 + PFLU_RS03560 0.20 -1.2 821,485 + PFLU_RS03560 0.20 -0.0 821,485 + PFLU_RS03560 0.20 +0.7 821,485 + PFLU_RS03560 0.20 +0.1 821,485 + PFLU_RS03560 0.20 +1.1 821,485 + PFLU_RS03560 0.20 -0.3 821,485 + PFLU_RS03560 0.20 +0.2 821,485 + PFLU_RS03560 0.20 -0.7 821,485 + PFLU_RS03560 0.20 -0.8 821,486 - PFLU_RS03560 0.20 +0.6 821,486 - PFLU_RS03560 0.20 -0.0 821,486 - PFLU_RS03560 0.20 -0.6 821,486 - PFLU_RS03560 0.20 +0.9 821,486 - PFLU_RS03560 0.20 -1.6 821,486 - PFLU_RS03560 0.20 -0.5 821,486 - PFLU_RS03560 0.20 -0.9 821,486 - PFLU_RS03560 0.20 +0.2 821,510 - PFLU_RS03560 0.23 +0.1 821,522 + PFLU_RS03560 0.25 -1.4 821,522 + PFLU_RS03560 0.25 -0.8 821,564 + PFLU_RS03560 0.30 +0.2 821,564 + PFLU_RS03560 0.30 +1.2 821,564 + PFLU_RS03560 0.30 -0.1 821,564 + PFLU_RS03560 0.30 +0.5 821,564 + PFLU_RS03560 0.30 +0.8 821,565 - PFLU_RS03560 0.30 +0.6 821,776 + PFLU_RS03560 0.57 +1.4 821,776 + PFLU_RS03560 0.57 -0.1 821,776 + PFLU_RS03560 0.57 -2.4 821,776 + PFLU_RS03560 0.57 +0.1 821,776 + PFLU_RS03560 0.57 +0.5 821,777 - PFLU_RS03560 0.57 +0.6 821,777 - PFLU_RS03560 0.57 -0.6 821,777 - PFLU_RS03560 0.57 +0.9 821,879 - PFLU_RS03560 0.70 +0.2 821,879 - PFLU_RS03560 0.70 +0.3 821,942 - PFLU_RS03560 0.78 +1.3 822,016 + PFLU_RS03560 0.87 +0.7 822,017 - PFLU_RS03560 0.88 +2.0 822,052 - +0.5 822,052 - +3.1 822,052 - +0.9 822,289 + PFLU_RS03565 0.16 +0.7 822,289 + PFLU_RS03565 0.16 -1.4 822,289 + PFLU_RS03565 0.16 -1.8 822,289 + PFLU_RS03565 0.16 -0.2 822,289 + PFLU_RS03565 0.16 -0.3 822,290 - PFLU_RS03565 0.16 -0.2
Or see this region's nucleotide sequence