Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03140 and PFLU_RS03145 are separated by 72 nucleotides PFLU_RS03145 and PFLU_RS03150 are separated by 126 nucleotides PFLU_RS03150 and PFLU_RS03155 are separated by 12 nucleotides PFLU_RS03155 and PFLU_RS03160 are separated by 3 nucleotides
PFLU_RS03140: PFLU_RS03140 - pilus assembly protein, at 729,187 to 729,630
_RS03140
PFLU_RS03145: PFLU_RS03145 - peptidase A24, at 729,703 to 730,152
_RS03145
PFLU_RS03150: PFLU_RS03150 - response regulator transcription factor, at 730,279 to 731,067
_RS03150
PFLU_RS03155: PFLU_RS03155 - DUF3613 domain-containing protein, at 731,080 to 731,349
_RS03155
PFLU_RS03160: PFLU_RS03160 - tetratricopeptide repeat protein, at 731,353 to 732,093
_RS03160
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 729.296 kb on + strand, within PFLU_RS03140 at 729.329 kb on + strand, within PFLU_RS03140 at 729.329 kb on + strand, within PFLU_RS03140 at 729.329 kb on + strand, within PFLU_RS03140 at 729.330 kb on - strand, within PFLU_RS03140 at 729.426 kb on + strand, within PFLU_RS03140 at 729.431 kb on + strand, within PFLU_RS03140 at 729.431 kb on + strand, within PFLU_RS03140 at 729.431 kb on + strand, within PFLU_RS03140 at 729.431 kb on + strand, within PFLU_RS03140 at 729.431 kb on + strand, within PFLU_RS03140 at 729.431 kb on + strand, within PFLU_RS03140 at 729.431 kb on + strand, within PFLU_RS03140 at 729.431 kb on + strand, within PFLU_RS03140 at 729.432 kb on - strand, within PFLU_RS03140 at 729.432 kb on - strand, within PFLU_RS03140 at 729.432 kb on - strand, within PFLU_RS03140 at 729.432 kb on - strand, within PFLU_RS03140 at 729.432 kb on - strand, within PFLU_RS03140 at 729.528 kb on + strand, within PFLU_RS03140 at 729.528 kb on + strand, within PFLU_RS03140 at 729.528 kb on + strand, within PFLU_RS03140 at 729.529 kb on - strand, within PFLU_RS03140 at 729.530 kb on + strand, within PFLU_RS03140 at 729.530 kb on + strand, within PFLU_RS03140 at 729.530 kb on + strand, within PFLU_RS03140 at 729.530 kb on + strand, within PFLU_RS03140 at 729.530 kb on + strand, within PFLU_RS03140 at 729.530 kb on + strand, within PFLU_RS03140 at 729.530 kb on + strand, within PFLU_RS03140 at 729.530 kb on + strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.531 kb on - strand, within PFLU_RS03140 at 729.545 kb on + strand, within PFLU_RS03140 at 729.545 kb on + strand, within PFLU_RS03140 at 729.546 kb on - strand, within PFLU_RS03140 at 729.546 kb on - strand, within PFLU_RS03140 at 729.586 kb on + strand at 729.652 kb on + strand at 729.652 kb on + strand at 729.653 kb on - strand at 729.655 kb on + strand at 729.655 kb on + strand at 729.656 kb on - strand at 729.656 kb on - strand at 729.656 kb on - strand at 729.656 kb on - strand at 729.663 kb on - strand at 729.670 kb on + strand at 729.670 kb on + strand at 729.671 kb on - strand at 729.671 kb on - strand at 729.700 kb on + strand at 729.723 kb on - strand at 729.817 kb on + strand, within PFLU_RS03145 at 729.818 kb on - strand, within PFLU_RS03145 at 729.818 kb on - strand, within PFLU_RS03145 at 729.837 kb on + strand, within PFLU_RS03145 at 729.837 kb on + strand, within PFLU_RS03145 at 729.838 kb on - strand, within PFLU_RS03145 at 730.112 kb on + strand at 730.113 kb on - strand at 730.113 kb on - strand at 730.113 kb on - strand at 730.132 kb on + strand at 730.133 kb on - strand at 730.167 kb on + strand at 730.167 kb on + strand at 730.168 kb on - strand at 730.177 kb on + strand at 730.177 kb on + strand at 730.177 kb on + strand at 730.177 kb on + strand at 730.177 kb on + strand at 730.177 kb on + strand at 730.177 kb on + strand at 730.177 kb on + strand at 730.178 kb on - strand at 730.178 kb on - strand at 730.178 kb on - strand at 730.178 kb on - strand at 730.192 kb on + strand at 730.192 kb on + strand at 730.193 kb on - strand at 730.193 kb on - strand at 730.198 kb on + strand at 730.198 kb on + strand at 730.198 kb on + strand at 730.198 kb on + strand at 730.199 kb on - strand at 730.199 kb on - strand at 730.199 kb on - strand at 730.199 kb on - strand at 730.199 kb on - strand at 730.204 kb on + strand at 730.219 kb on + strand at 730.219 kb on + strand at 730.220 kb on - strand at 730.289 kb on + strand at 730.290 kb on - strand at 730.603 kb on + strand, within PFLU_RS03150 at 730.603 kb on + strand, within PFLU_RS03150 at 730.604 kb on - strand, within PFLU_RS03150 at 730.604 kb on - strand, within PFLU_RS03150 at 730.606 kb on + strand, within PFLU_RS03150 at 730.607 kb on - strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.720 kb on + strand, within PFLU_RS03150 at 730.721 kb on - strand, within PFLU_RS03150 at 730.721 kb on - strand, within PFLU_RS03150 at 730.721 kb on - strand, within PFLU_RS03150 at 730.721 kb on - strand, within PFLU_RS03150 at 730.721 kb on - strand, within PFLU_RS03150 at 730.748 kb on - strand, within PFLU_RS03150 at 730.773 kb on + strand, within PFLU_RS03150 at 730.912 kb on + strand, within PFLU_RS03150 at 730.912 kb on + strand, within PFLU_RS03150 at 730.912 kb on + strand, within PFLU_RS03150 at 730.913 kb on - strand, within PFLU_RS03150 at 730.960 kb on + strand, within PFLU_RS03150 at 730.960 kb on + strand, within PFLU_RS03150 at 730.960 kb on + strand, within PFLU_RS03150 at 730.960 kb on + strand, within PFLU_RS03150 at 730.961 kb on - strand, within PFLU_RS03150 at 730.961 kb on - strand, within PFLU_RS03150 at 730.961 kb on - strand, within PFLU_RS03150 at 730.961 kb on - strand, within PFLU_RS03150 at 730.961 kb on - strand, within PFLU_RS03150 at 730.961 kb on - strand, within PFLU_RS03150 at 730.961 kb on - strand, within PFLU_RS03150 at 730.989 kb on + strand at 730.989 kb on + strand at 730.990 kb on - strand at 730.990 kb on - strand at 730.995 kb on + strand at 730.996 kb on - strand at 731.031 kb on + strand at 731.082 kb on - strand at 731.100 kb on + strand at 731.101 kb on - strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.336 kb on + strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.337 kb on - strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.341 kb on + strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.342 kb on - strand at 731.546 kb on + strand, within PFLU_RS03160 at 731.546 kb on + strand, within PFLU_RS03160 at 731.546 kb on + strand, within PFLU_RS03160 at 731.655 kb on - strand, within PFLU_RS03160 at 731.655 kb on - strand, within PFLU_RS03160 at 731.655 kb on - strand, within PFLU_RS03160 at 731.655 kb on - strand, within PFLU_RS03160 at 731.718 kb on + strand, within PFLU_RS03160 at 731.719 kb on - strand, within PFLU_RS03160 at 731.719 kb on - strand, within PFLU_RS03160 at 731.719 kb on - strand, within PFLU_RS03160 at 731.719 kb on - strand, within PFLU_RS03160 at 731.816 kb on + strand, within PFLU_RS03160 at 731.816 kb on + strand, within PFLU_RS03160 at 731.816 kb on + strand, within PFLU_RS03160 at 731.853 kb on - strand, within PFLU_RS03160
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 729,296 + PFLU_RS03140 0.25 +0.5 729,329 + PFLU_RS03140 0.32 -1.2 729,329 + PFLU_RS03140 0.32 -0.0 729,329 + PFLU_RS03140 0.32 -0.9 729,330 - PFLU_RS03140 0.32 -0.1 729,426 + PFLU_RS03140 0.54 +0.6 729,431 + PFLU_RS03140 0.55 +0.7 729,431 + PFLU_RS03140 0.55 +0.8 729,431 + PFLU_RS03140 0.55 +0.7 729,431 + PFLU_RS03140 0.55 -1.0 729,431 + PFLU_RS03140 0.55 +0.3 729,431 + PFLU_RS03140 0.55 +0.0 729,431 + PFLU_RS03140 0.55 -0.3 729,431 + PFLU_RS03140 0.55 -0.8 729,432 - PFLU_RS03140 0.55 -0.1 729,432 - PFLU_RS03140 0.55 -1.4 729,432 - PFLU_RS03140 0.55 -0.2 729,432 - PFLU_RS03140 0.55 -0.5 729,432 - PFLU_RS03140 0.55 -0.2 729,528 + PFLU_RS03140 0.77 +0.1 729,528 + PFLU_RS03140 0.77 -1.4 729,528 + PFLU_RS03140 0.77 +0.6 729,529 - PFLU_RS03140 0.77 -1.1 729,530 + PFLU_RS03140 0.77 +0.7 729,530 + PFLU_RS03140 0.77 -0.4 729,530 + PFLU_RS03140 0.77 -0.1 729,530 + PFLU_RS03140 0.77 +0.4 729,530 + PFLU_RS03140 0.77 +1.2 729,530 + PFLU_RS03140 0.77 -0.9 729,530 + PFLU_RS03140 0.77 +0.1 729,530 + PFLU_RS03140 0.77 +1.4 729,531 - PFLU_RS03140 0.77 -1.6 729,531 - PFLU_RS03140 0.77 +0.3 729,531 - PFLU_RS03140 0.77 +0.4 729,531 - PFLU_RS03140 0.77 -1.5 729,531 - PFLU_RS03140 0.77 +0.4 729,531 - PFLU_RS03140 0.77 +0.5 729,531 - PFLU_RS03140 0.77 -1.6 729,531 - PFLU_RS03140 0.77 +0.8 729,531 - PFLU_RS03140 0.77 -0.3 729,531 - PFLU_RS03140 0.77 -0.4 729,531 - PFLU_RS03140 0.77 +0.6 729,545 + PFLU_RS03140 0.81 +0.1 729,545 + PFLU_RS03140 0.81 +1.4 729,546 - PFLU_RS03140 0.81 +0.7 729,546 - PFLU_RS03140 0.81 -1.7 729,586 + -0.0 729,652 + +0.1 729,652 + +0.5 729,653 - -1.4 729,655 + +0.1 729,655 + +0.7 729,656 - +0.2 729,656 - -0.2 729,656 - +0.5 729,656 - -0.4 729,663 - +0.3 729,670 + +1.4 729,670 + +0.9 729,671 - +0.5 729,671 - -0.5 729,700 + -0.9 729,723 - -0.4 729,817 + PFLU_RS03145 0.25 -0.1 729,818 - PFLU_RS03145 0.26 +1.0 729,818 - PFLU_RS03145 0.26 +1.6 729,837 + PFLU_RS03145 0.30 +0.8 729,837 + PFLU_RS03145 0.30 +0.6 729,838 - PFLU_RS03145 0.30 -0.5 730,112 + +0.8 730,113 - +0.9 730,113 - -0.3 730,113 - -0.5 730,132 + +0.3 730,133 - +0.2 730,167 + -0.6 730,167 + -0.7 730,168 - +1.0 730,177 + -1.1 730,177 + +0.6 730,177 + +1.0 730,177 + -1.3 730,177 + +0.1 730,177 + +0.7 730,177 + +0.5 730,177 + -0.2 730,178 - -0.3 730,178 - +0.3 730,178 - +0.1 730,178 - +1.2 730,192 + -0.5 730,192 + +1.5 730,193 - +0.7 730,193 - -0.2 730,198 + -0.2 730,198 + -0.6 730,198 + +0.5 730,198 + +0.7 730,199 - +1.0 730,199 - +0.5 730,199 - +0.2 730,199 - -0.4 730,199 - -1.5 730,204 + +0.4 730,219 + -2.1 730,219 + +0.1 730,220 - +1.1 730,289 + -0.2 730,290 - +1.0 730,603 + PFLU_RS03150 0.41 +0.6 730,603 + PFLU_RS03150 0.41 -0.5 730,604 - PFLU_RS03150 0.41 -0.2 730,604 - PFLU_RS03150 0.41 +1.1 730,606 + PFLU_RS03150 0.41 -2.4 730,607 - PFLU_RS03150 0.42 -1.0 730,720 + PFLU_RS03150 0.56 -1.2 730,720 + PFLU_RS03150 0.56 +0.2 730,720 + PFLU_RS03150 0.56 +1.5 730,720 + PFLU_RS03150 0.56 -0.3 730,720 + PFLU_RS03150 0.56 +0.8 730,720 + PFLU_RS03150 0.56 +1.0 730,720 + PFLU_RS03150 0.56 -0.2 730,720 + PFLU_RS03150 0.56 -0.2 730,720 + PFLU_RS03150 0.56 -0.1 730,720 + PFLU_RS03150 0.56 +0.3 730,720 + PFLU_RS03150 0.56 -1.2 730,721 - PFLU_RS03150 0.56 +1.0 730,721 - PFLU_RS03150 0.56 +1.6 730,721 - PFLU_RS03150 0.56 -0.7 730,721 - PFLU_RS03150 0.56 +0.1 730,721 - PFLU_RS03150 0.56 +0.7 730,748 - PFLU_RS03150 0.59 +1.1 730,773 + PFLU_RS03150 0.63 +1.7 730,912 + PFLU_RS03150 0.80 +0.6 730,912 + PFLU_RS03150 0.80 -0.4 730,912 + PFLU_RS03150 0.80 -0.4 730,913 - PFLU_RS03150 0.80 +1.0 730,960 + PFLU_RS03150 0.86 -0.2 730,960 + PFLU_RS03150 0.86 +1.1 730,960 + PFLU_RS03150 0.86 -0.7 730,960 + PFLU_RS03150 0.86 +0.7 730,961 - PFLU_RS03150 0.86 +0.9 730,961 - PFLU_RS03150 0.86 -0.1 730,961 - PFLU_RS03150 0.86 +0.4 730,961 - PFLU_RS03150 0.86 +0.8 730,961 - PFLU_RS03150 0.86 +0.4 730,961 - PFLU_RS03150 0.86 -0.4 730,961 - PFLU_RS03150 0.86 +0.6 730,989 + +0.2 730,989 + +0.3 730,990 - -0.3 730,990 - -0.6 730,995 + -1.1 730,996 - +0.4 731,031 + -0.4 731,082 - -0.3 731,100 + -1.0 731,101 - +0.0 731,336 + +1.4 731,336 + -0.0 731,336 + +0.7 731,336 + +0.3 731,336 + +0.4 731,337 - +0.6 731,337 - +0.0 731,337 - +1.0 731,337 - -3.4 731,337 - +0.7 731,337 - +0.1 731,337 - -0.5 731,337 - +0.2 731,337 - -0.5 731,337 - +0.5 731,337 - +0.9 731,341 + -0.2 731,341 + -0.6 731,341 + +1.0 731,341 + -1.7 731,341 + +0.2 731,341 + +1.2 731,341 + +0.2 731,342 - +0.6 731,342 - +0.0 731,342 - +0.7 731,342 - +0.2 731,342 - -0.6 731,342 - -0.2 731,546 + PFLU_RS03160 0.26 +1.4 731,546 + PFLU_RS03160 0.26 -0.6 731,546 + PFLU_RS03160 0.26 +0.0 731,655 - PFLU_RS03160 0.41 -0.1 731,655 - PFLU_RS03160 0.41 +0.8 731,655 - PFLU_RS03160 0.41 +1.1 731,655 - PFLU_RS03160 0.41 +1.1 731,718 + PFLU_RS03160 0.49 -0.1 731,719 - PFLU_RS03160 0.49 -2.1 731,719 - PFLU_RS03160 0.49 +1.4 731,719 - PFLU_RS03160 0.49 +0.5 731,719 - PFLU_RS03160 0.49 +1.1 731,816 + PFLU_RS03160 0.62 -2.9 731,816 + PFLU_RS03160 0.62 -0.3 731,816 + PFLU_RS03160 0.62 +0.1 731,853 - PFLU_RS03160 0.67 -0.7
Or see this region's nucleotide sequence