Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02995 and PFLU_RS03000 overlap by 4 nucleotides PFLU_RS03000 and PFLU_RS31385 are separated by 70 nucleotides PFLU_RS31385 and PFLU_RS03005 are separated by 31 nucleotides
PFLU_RS02995: PFLU_RS02995 - hypothetical protein, at 689,181 to 689,960
_RS02995
PFLU_RS03000: PFLU_RS03000 - MarC family protein, at 689,957 to 690,553
_RS03000
PFLU_RS31385: PFLU_RS31385 - LysR family transcriptional regulator, at 690,624 to 690,779
_RS31385
PFLU_RS03005: PFLU_RS03005 - hybrid sensor histidine kinase/response regulator, at 690,811 to 693,582
_RS03005
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 689.135 kb on + strand at 689.135 kb on + strand at 689.136 kb on - strand at 689.136 kb on - strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.146 kb on + strand at 689.147 kb on - strand at 689.147 kb on - strand at 689.147 kb on - strand at 689.147 kb on - strand at 689.147 kb on - strand at 689.210 kb on + strand at 689.210 kb on + strand at 689.210 kb on + strand at 689.238 kb on + strand at 689.276 kb on - strand, within PFLU_RS02995 at 689.367 kb on + strand, within PFLU_RS02995 at 689.367 kb on + strand, within PFLU_RS02995 at 689.367 kb on + strand, within PFLU_RS02995 at 689.367 kb on + strand, within PFLU_RS02995 at 689.367 kb on + strand, within PFLU_RS02995 at 689.368 kb on - strand, within PFLU_RS02995 at 689.368 kb on - strand, within PFLU_RS02995 at 689.368 kb on - strand, within PFLU_RS02995 at 689.368 kb on - strand, within PFLU_RS02995 at 689.368 kb on - strand, within PFLU_RS02995 at 689.368 kb on - strand, within PFLU_RS02995 at 689.368 kb on - strand, within PFLU_RS02995 at 689.376 kb on - strand, within PFLU_RS02995 at 689.382 kb on + strand, within PFLU_RS02995 at 689.383 kb on - strand, within PFLU_RS02995 at 689.383 kb on - strand, within PFLU_RS02995 at 689.400 kb on + strand, within PFLU_RS02995 at 689.401 kb on - strand, within PFLU_RS02995 at 689.401 kb on - strand, within PFLU_RS02995 at 689.457 kb on - strand, within PFLU_RS02995 at 689.457 kb on - strand, within PFLU_RS02995 at 689.582 kb on + strand, within PFLU_RS02995 at 689.583 kb on - strand, within PFLU_RS02995 at 689.583 kb on - strand, within PFLU_RS02995 at 689.695 kb on + strand, within PFLU_RS02995 at 689.696 kb on - strand, within PFLU_RS02995 at 689.769 kb on + strand, within PFLU_RS02995 at 689.769 kb on + strand, within PFLU_RS02995 at 689.769 kb on + strand, within PFLU_RS02995 at 689.769 kb on + strand, within PFLU_RS02995 at 689.769 kb on + strand, within PFLU_RS02995 at 689.770 kb on - strand, within PFLU_RS02995 at 689.770 kb on - strand, within PFLU_RS02995 at 689.770 kb on - strand, within PFLU_RS02995 at 689.770 kb on - strand, within PFLU_RS02995 at 689.770 kb on - strand, within PFLU_RS02995 at 689.959 kb on - strand at 690.067 kb on + strand, within PFLU_RS03000 at 690.090 kb on + strand, within PFLU_RS03000 at 690.090 kb on + strand, within PFLU_RS03000 at 690.091 kb on - strand, within PFLU_RS03000 at 690.091 kb on - strand, within PFLU_RS03000 at 690.091 kb on - strand, within PFLU_RS03000 at 690.091 kb on - strand, within PFLU_RS03000 at 690.091 kb on - strand, within PFLU_RS03000 at 690.170 kb on + strand, within PFLU_RS03000 at 690.171 kb on - strand, within PFLU_RS03000 at 690.171 kb on - strand, within PFLU_RS03000 at 690.388 kb on - strand, within PFLU_RS03000 at 690.478 kb on + strand, within PFLU_RS03000 at 690.507 kb on + strand at 690.507 kb on + strand at 690.507 kb on + strand at 690.508 kb on - strand at 690.591 kb on + strand at 690.591 kb on + strand at 690.591 kb on + strand at 690.592 kb on - strand at 690.592 kb on - strand at 690.781 kb on + strand at 690.781 kb on + strand at 690.781 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.783 kb on + strand at 690.784 kb on - strand at 690.784 kb on - strand at 690.784 kb on - strand at 690.784 kb on - strand at 690.784 kb on - strand at 690.784 kb on - strand at 690.784 kb on - strand at 690.784 kb on - strand at 690.940 kb on - strand at 691.070 kb on - strand at 691.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 689,135 + -1.3 689,135 + +0.3 689,136 - -0.3 689,136 - -1.2 689,146 + -1.2 689,146 + +0.1 689,146 + +0.9 689,146 + -1.5 689,146 + -0.6 689,146 + +0.0 689,146 + -0.3 689,146 + -0.3 689,146 + +0.4 689,146 + -1.5 689,146 + -1.7 689,146 + -1.9 689,146 + +0.1 689,146 + -0.3 689,147 - -0.6 689,147 - +0.2 689,147 - -0.2 689,147 - -0.2 689,147 - +0.4 689,210 + +0.1 689,210 + -1.0 689,210 + +1.4 689,238 + -0.2 689,276 - PFLU_RS02995 0.12 -0.7 689,367 + PFLU_RS02995 0.24 +0.2 689,367 + PFLU_RS02995 0.24 -0.8 689,367 + PFLU_RS02995 0.24 -0.5 689,367 + PFLU_RS02995 0.24 +0.2 689,367 + PFLU_RS02995 0.24 +0.5 689,368 - PFLU_RS02995 0.24 -0.1 689,368 - PFLU_RS02995 0.24 -0.2 689,368 - PFLU_RS02995 0.24 +0.3 689,368 - PFLU_RS02995 0.24 +1.2 689,368 - PFLU_RS02995 0.24 +0.7 689,368 - PFLU_RS02995 0.24 -0.5 689,368 - PFLU_RS02995 0.24 +0.1 689,376 - PFLU_RS02995 0.25 +1.5 689,382 + PFLU_RS02995 0.26 +0.2 689,383 - PFLU_RS02995 0.26 -1.2 689,383 - PFLU_RS02995 0.26 +0.3 689,400 + PFLU_RS02995 0.28 +0.3 689,401 - PFLU_RS02995 0.28 -1.2 689,401 - PFLU_RS02995 0.28 -0.3 689,457 - PFLU_RS02995 0.35 +0.0 689,457 - PFLU_RS02995 0.35 -0.8 689,582 + PFLU_RS02995 0.51 -0.4 689,583 - PFLU_RS02995 0.52 -0.1 689,583 - PFLU_RS02995 0.52 -2.2 689,695 + PFLU_RS02995 0.66 -0.5 689,696 - PFLU_RS02995 0.66 +0.3 689,769 + PFLU_RS02995 0.75 +0.3 689,769 + PFLU_RS02995 0.75 +0.1 689,769 + PFLU_RS02995 0.75 -2.3 689,769 + PFLU_RS02995 0.75 -1.2 689,769 + PFLU_RS02995 0.75 +2.0 689,770 - PFLU_RS02995 0.76 +0.6 689,770 - PFLU_RS02995 0.76 -1.2 689,770 - PFLU_RS02995 0.76 +0.8 689,770 - PFLU_RS02995 0.76 +0.8 689,770 - PFLU_RS02995 0.76 -0.4 689,959 - -1.4 690,067 + PFLU_RS03000 0.18 +0.0 690,090 + PFLU_RS03000 0.22 -1.2 690,090 + PFLU_RS03000 0.22 -0.4 690,091 - PFLU_RS03000 0.22 +1.2 690,091 - PFLU_RS03000 0.22 -0.0 690,091 - PFLU_RS03000 0.22 +0.3 690,091 - PFLU_RS03000 0.22 +0.0 690,091 - PFLU_RS03000 0.22 +0.2 690,170 + PFLU_RS03000 0.36 -1.3 690,171 - PFLU_RS03000 0.36 +0.2 690,171 - PFLU_RS03000 0.36 -0.3 690,388 - PFLU_RS03000 0.72 +0.9 690,478 + PFLU_RS03000 0.87 +1.7 690,507 + +0.8 690,507 + +1.1 690,507 + +0.3 690,508 - +1.0 690,591 + +0.4 690,591 + +0.0 690,591 + -0.1 690,592 - +1.4 690,592 - +1.5 690,781 + +0.3 690,781 + -0.5 690,781 + +0.8 690,783 + -1.3 690,783 + +0.2 690,783 + +0.2 690,783 + +0.4 690,783 + -0.1 690,783 + +1.0 690,783 + +1.2 690,783 + +0.2 690,783 + -0.3 690,783 + +0.6 690,783 + +0.1 690,783 + +0.8 690,783 + +1.4 690,783 + +1.7 690,784 - +0.2 690,784 - +0.2 690,784 - +0.5 690,784 - +0.4 690,784 - -0.0 690,784 - +0.0 690,784 - -0.6 690,784 - +0.1 690,940 - +0.0 691,070 - +0.0 691,070 - +0.0
Or see this region's nucleotide sequence