Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02415

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02405 and PFLU_RS02410 are separated by 55 nucleotidesPFLU_RS02410 and PFLU_RS02415 are separated by 102 nucleotidesPFLU_RS02415 and PFLU_RS02420 are separated by 23 nucleotides PFLU_RS02405: PFLU_RS02405 - FAD-dependent oxidoreductase, at 552,290 to 553,465 _RS02405 PFLU_RS02410: PFLU_RS02410 - multidrug efflux SMR transporter, at 553,521 to 553,856 _RS02410 PFLU_RS02415: PFLU_RS02415 - LysR family transcriptional regulator, at 553,959 to 554,849 _RS02415 PFLU_RS02420: PFLU_RS02420 - 3-deoxy-D-manno-octulosonic acid transferase, at 554,873 to 556,150 _RS02420 Position (kb) 553 554 555Strain fitness (log2 ratio) -2 -1 0 1 2at 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.501 kb on + strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.502 kb on - strandat 553.557 kb on + strand, within PFLU_RS02410at 553.557 kb on + strand, within PFLU_RS02410at 553.557 kb on + strand, within PFLU_RS02410at 553.619 kb on - strand, within PFLU_RS02410at 553.622 kb on + strand, within PFLU_RS02410at 553.622 kb on + strand, within PFLU_RS02410at 553.622 kb on + strand, within PFLU_RS02410at 553.623 kb on - strand, within PFLU_RS02410at 553.623 kb on - strand, within PFLU_RS02410at 553.623 kb on - strand, within PFLU_RS02410at 553.623 kb on - strand, within PFLU_RS02410at 553.623 kb on - strand, within PFLU_RS02410at 553.623 kb on - strand, within PFLU_RS02410at 553.623 kb on - strand, within PFLU_RS02410at 553.675 kb on + strand, within PFLU_RS02410at 553.837 kb on + strandat 553.837 kb on + strandat 553.837 kb on + strandat 553.838 kb on - strandat 553.843 kb on + strandat 553.844 kb on - strandat 553.844 kb on - strandat 553.844 kb on - strandat 553.844 kb on - strandat 553.844 kb on - strandat 553.844 kb on - strandat 553.874 kb on - strandat 553.886 kb on + strandat 553.886 kb on + strandat 553.886 kb on + strandat 553.886 kb on + strandat 553.887 kb on - strandat 553.900 kb on + strandat 553.920 kb on + strandat 554.120 kb on + strand, within PFLU_RS02415at 554.121 kb on - strand, within PFLU_RS02415at 554.401 kb on + strand, within PFLU_RS02415at 554.401 kb on + strand, within PFLU_RS02415at 554.402 kb on - strand, within PFLU_RS02415at 554.402 kb on - strand, within PFLU_RS02415at 554.415 kb on + strand, within PFLU_RS02415at 554.416 kb on - strand, within PFLU_RS02415at 554.416 kb on - strand, within PFLU_RS02415at 554.416 kb on - strand, within PFLU_RS02415at 554.514 kb on + strand, within PFLU_RS02415at 554.514 kb on + strand, within PFLU_RS02415at 554.514 kb on + strand, within PFLU_RS02415at 554.514 kb on + strand, within PFLU_RS02415at 554.514 kb on + strand, within PFLU_RS02415at 554.514 kb on + strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.515 kb on - strand, within PFLU_RS02415at 554.577 kb on + strand, within PFLU_RS02415at 554.628 kb on + strand, within PFLU_RS02415at 554.628 kb on + strand, within PFLU_RS02415at 554.629 kb on - strand, within PFLU_RS02415at 554.684 kb on + strand, within PFLU_RS02415at 554.703 kb on + strand, within PFLU_RS02415at 554.703 kb on + strand, within PFLU_RS02415at 554.703 kb on + strand, within PFLU_RS02415at 554.703 kb on + strand, within PFLU_RS02415at 554.703 kb on + strand, within PFLU_RS02415at 554.703 kb on + strand, within PFLU_RS02415at 554.703 kb on + strand, within PFLU_RS02415at 554.703 kb on + strand, within PFLU_RS02415at 554.704 kb on - strand, within PFLU_RS02415at 554.704 kb on - strand, within PFLU_RS02415

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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553,501 + -2.0
553,501 + -2.4
553,501 + +0.5
553,501 + -0.5
553,501 + +1.7
553,501 + +0.0
553,501 + +0.6
553,501 + -0.3
553,501 + +1.2
553,501 + +0.3
553,501 + -0.6
553,501 + -0.3
553,502 - +0.9
553,502 - +0.9
553,502 - -1.0
553,502 - +1.0
553,502 - +0.7
553,502 - +0.0
553,557 + PFLU_RS02410 0.11 -0.3
553,557 + PFLU_RS02410 0.11 -1.1
553,557 + PFLU_RS02410 0.11 +1.5
553,619 - PFLU_RS02410 0.29 -0.1
553,622 + PFLU_RS02410 0.30 -0.2
553,622 + PFLU_RS02410 0.30 -1.1
553,622 + PFLU_RS02410 0.30 +2.6
553,623 - PFLU_RS02410 0.30 +1.7
553,623 - PFLU_RS02410 0.30 -0.5
553,623 - PFLU_RS02410 0.30 +0.7
553,623 - PFLU_RS02410 0.30 +0.3
553,623 - PFLU_RS02410 0.30 -0.7
553,623 - PFLU_RS02410 0.30 +0.3
553,623 - PFLU_RS02410 0.30 -0.5
553,675 + PFLU_RS02410 0.46 -0.3
553,837 + -1.0
553,837 + -0.2
553,837 + -0.0
553,838 - +0.0
553,843 + -0.3
553,844 - +0.8
553,844 - +0.9
553,844 - -0.3
553,844 - +1.6
553,844 - +1.0
553,844 - -0.4
553,874 - +1.5
553,886 + +0.3
553,886 + -0.5
553,886 + +0.3
553,886 + +0.7
553,887 - +0.0
553,900 + +0.6
553,920 + -0.3
554,120 + PFLU_RS02415 0.18 +0.3
554,121 - PFLU_RS02415 0.18 -0.0
554,401 + PFLU_RS02415 0.50 -0.2
554,401 + PFLU_RS02415 0.50 -2.5
554,402 - PFLU_RS02415 0.50 +0.3
554,402 - PFLU_RS02415 0.50 -2.1
554,415 + PFLU_RS02415 0.51 +0.3
554,416 - PFLU_RS02415 0.51 -0.6
554,416 - PFLU_RS02415 0.51 +1.0
554,416 - PFLU_RS02415 0.51 +0.7
554,514 + PFLU_RS02415 0.62 +1.7
554,514 + PFLU_RS02415 0.62 +0.1
554,514 + PFLU_RS02415 0.62 -0.9
554,514 + PFLU_RS02415 0.62 -0.2
554,514 + PFLU_RS02415 0.62 +0.0
554,514 + PFLU_RS02415 0.62 -1.0
554,515 - PFLU_RS02415 0.62 +0.6
554,515 - PFLU_RS02415 0.62 -0.3
554,515 - PFLU_RS02415 0.62 +0.5
554,515 - PFLU_RS02415 0.62 -0.7
554,515 - PFLU_RS02415 0.62 -0.2
554,515 - PFLU_RS02415 0.62 +0.2
554,515 - PFLU_RS02415 0.62 +0.6
554,515 - PFLU_RS02415 0.62 +0.1
554,515 - PFLU_RS02415 0.62 +0.5
554,515 - PFLU_RS02415 0.62 +1.5
554,577 + PFLU_RS02415 0.69 -1.3
554,628 + PFLU_RS02415 0.75 -1.4
554,628 + PFLU_RS02415 0.75 +0.4
554,629 - PFLU_RS02415 0.75 -0.5
554,684 + PFLU_RS02415 0.81 +1.2
554,703 + PFLU_RS02415 0.84 +1.2
554,703 + PFLU_RS02415 0.84 -0.2
554,703 + PFLU_RS02415 0.84 -0.7
554,703 + PFLU_RS02415 0.84 +0.6
554,703 + PFLU_RS02415 0.84 +0.8
554,703 + PFLU_RS02415 0.84 -2.0
554,703 + PFLU_RS02415 0.84 +0.9
554,703 + PFLU_RS02415 0.84 -1.0
554,704 - PFLU_RS02415 0.84 +0.1
554,704 - PFLU_RS02415 0.84 +0.6

Or see this region's nucleotide sequence