Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00880 and PFLU_RS00885 overlap by 4 nucleotides PFLU_RS00885 and PFLU_RS00890 overlap by 4 nucleotides PFLU_RS00890 and PFLU_RS31360 overlap by 4 nucleotides PFLU_RS31360 and PFLU_RS00895 are separated by 47 nucleotides PFLU_RS00895 and PFLU_RS30335 overlap by 4 nucleotides
PFLU_RS00880: PFLU_RS00880 - DUF927 domain-containing protein, at 196,625 to 199,513
_RS00880
PFLU_RS00885: PFLU_RS00885 - DUF3077 domain-containing protein, at 199,510 to 199,782
_RS00885
PFLU_RS00890: PFLU_RS00890 - hypothetical protein, at 199,779 to 200,063
_RS00890
PFLU_RS31360: PFLU_RS31360 - hypothetical protein, at 200,060 to 200,545
_RS31360
PFLU_RS00895: PFLU_RS00895 - hypothetical protein, at 200,593 to 200,898
_RS00895
PFLU_RS30335: PFLU_RS30335 - AlpA family phage regulatory protein, at 200,895 to 201,212
_RS30335
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.786 kb on + strand, within PFLU_RS00880 at 198.786 kb on + strand, within PFLU_RS00880 at 198.787 kb on - strand, within PFLU_RS00880 at 198.787 kb on - strand, within PFLU_RS00880 at 199.015 kb on - strand, within PFLU_RS00880 at 199.015 kb on - strand, within PFLU_RS00880 at 199.015 kb on - strand, within PFLU_RS00880 at 199.050 kb on + strand, within PFLU_RS00880 at 199.050 kb on + strand, within PFLU_RS00880 at 199.051 kb on - strand, within PFLU_RS00880 at 199.254 kb on + strand at 199.255 kb on - strand at 199.255 kb on - strand at 199.295 kb on - strand at 199.369 kb on + strand at 199.369 kb on + strand at 199.369 kb on + strand at 199.370 kb on - strand at 199.370 kb on - strand at 199.370 kb on - strand at 199.380 kb on + strand at 199.380 kb on + strand at 199.380 kb on + strand at 199.380 kb on + strand at 199.380 kb on + strand at 199.380 kb on + strand at 199.380 kb on + strand at 199.381 kb on - strand at 199.381 kb on - strand at 199.381 kb on - strand at 199.381 kb on - strand at 199.381 kb on - strand at 199.464 kb on - strand at 199.521 kb on + strand at 199.532 kb on + strand at 199.533 kb on - strand at 199.583 kb on + strand, within PFLU_RS00885 at 199.652 kb on + strand, within PFLU_RS00885 at 199.653 kb on - strand, within PFLU_RS00885 at 199.653 kb on - strand, within PFLU_RS00885 at 199.653 kb on - strand, within PFLU_RS00885 at 199.655 kb on + strand, within PFLU_RS00885 at 199.655 kb on + strand, within PFLU_RS00885 at 199.655 kb on + strand, within PFLU_RS00885 at 199.717 kb on + strand, within PFLU_RS00885 at 199.717 kb on + strand, within PFLU_RS00885 at 199.717 kb on + strand, within PFLU_RS00885 at 199.717 kb on + strand, within PFLU_RS00885 at 199.737 kb on + strand, within PFLU_RS00885 at 199.767 kb on + strand at 199.828 kb on + strand, within PFLU_RS00890 at 199.828 kb on + strand, within PFLU_RS00890 at 199.828 kb on + strand, within PFLU_RS00890 at 199.828 kb on + strand, within PFLU_RS00890 at 199.829 kb on - strand, within PFLU_RS00890 at 199.829 kb on - strand, within PFLU_RS00890 at 199.829 kb on - strand, within PFLU_RS00890 at 199.829 kb on - strand, within PFLU_RS00890 at 199.829 kb on - strand, within PFLU_RS00890 at 199.829 kb on - strand, within PFLU_RS00890 at 199.877 kb on + strand, within PFLU_RS00890 at 199.878 kb on - strand, within PFLU_RS00890 at 199.914 kb on - strand, within PFLU_RS00890 at 199.923 kb on + strand, within PFLU_RS00890 at 199.979 kb on + strand, within PFLU_RS00890 at 199.980 kb on - strand, within PFLU_RS00890 at 199.994 kb on + strand, within PFLU_RS00890 at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.104 kb on + strand at 200.105 kb on - strand at 200.105 kb on - strand at 200.105 kb on - strand at 200.105 kb on - strand at 200.105 kb on - strand at 200.115 kb on + strand, within PFLU_RS31360 at 200.116 kb on - strand, within PFLU_RS31360 at 200.116 kb on - strand, within PFLU_RS31360 at 200.227 kb on + strand, within PFLU_RS31360 at 200.227 kb on + strand, within PFLU_RS31360 at 200.227 kb on + strand, within PFLU_RS31360 at 200.228 kb on - strand, within PFLU_RS31360 at 200.228 kb on - strand, within PFLU_RS31360 at 200.228 kb on - strand, within PFLU_RS31360 at 200.228 kb on - strand, within PFLU_RS31360 at 200.228 kb on - strand, within PFLU_RS31360 at 200.228 kb on - strand, within PFLU_RS31360 at 200.228 kb on - strand, within PFLU_RS31360 at 200.296 kb on + strand, within PFLU_RS31360 at 200.296 kb on + strand, within PFLU_RS31360 at 200.352 kb on + strand, within PFLU_RS31360 at 200.353 kb on - strand, within PFLU_RS31360 at 200.353 kb on - strand, within PFLU_RS31360 at 200.359 kb on + strand, within PFLU_RS31360 at 200.359 kb on + strand, within PFLU_RS31360 at 200.359 kb on + strand, within PFLU_RS31360 at 200.360 kb on - strand, within PFLU_RS31360 at 200.360 kb on - strand, within PFLU_RS31360 at 200.360 kb on - strand, within PFLU_RS31360 at 200.360 kb on - strand, within PFLU_RS31360 at 200.429 kb on - strand, within PFLU_RS31360 at 200.547 kb on + strand at 200.547 kb on + strand at 200.547 kb on + strand at 200.548 kb on - strand at 200.548 kb on - strand at 200.548 kb on - strand at 200.553 kb on + strand at 200.666 kb on + strand, within PFLU_RS00895 at 200.666 kb on + strand, within PFLU_RS00895 at 200.666 kb on + strand, within PFLU_RS00895 at 200.666 kb on + strand, within PFLU_RS00895 at 200.667 kb on - strand, within PFLU_RS00895 at 200.959 kb on - strand, within PFLU_RS30335 at 200.988 kb on - strand, within PFLU_RS30335 at 200.990 kb on + strand, within PFLU_RS30335 at 200.991 kb on - strand, within PFLU_RS30335 at 200.991 kb on - strand, within PFLU_RS30335 at 200.991 kb on - strand, within PFLU_RS30335 at 200.991 kb on - strand, within PFLU_RS30335 at 201.039 kb on + strand, within PFLU_RS30335 at 201.039 kb on + strand, within PFLU_RS30335 at 201.039 kb on + strand, within PFLU_RS30335 at 201.039 kb on + strand, within PFLU_RS30335 at 201.039 kb on + strand, within PFLU_RS30335 at 201.039 kb on + strand, within PFLU_RS30335 at 201.039 kb on + strand, within PFLU_RS30335 at 201.039 kb on + strand, within PFLU_RS30335 at 201.040 kb on - strand, within PFLU_RS30335 at 201.040 kb on - strand, within PFLU_RS30335 at 201.040 kb on - strand, within PFLU_RS30335 at 201.040 kb on - strand, within PFLU_RS30335 at 201.040 kb on - strand, within PFLU_RS30335 at 201.040 kb on - strand, within PFLU_RS30335 at 201.040 kb on - strand, within PFLU_RS30335 at 201.040 kb on - strand, within PFLU_RS30335 at 201.047 kb on - strand, within PFLU_RS30335 at 201.047 kb on - strand, within PFLU_RS30335
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 198,786 + PFLU_RS00880 0.75 -0.9 198,786 + PFLU_RS00880 0.75 +1.1 198,787 - PFLU_RS00880 0.75 +0.4 198,787 - PFLU_RS00880 0.75 -0.5 199,015 - PFLU_RS00880 0.83 +0.3 199,015 - PFLU_RS00880 0.83 -0.1 199,015 - PFLU_RS00880 0.83 -0.5 199,050 + PFLU_RS00880 0.84 +0.5 199,050 + PFLU_RS00880 0.84 +2.4 199,051 - PFLU_RS00880 0.84 -0.1 199,254 + -0.9 199,255 - +0.2 199,255 - +0.4 199,295 - +0.5 199,369 + +0.1 199,369 + -1.7 199,369 + +1.1 199,370 - -1.2 199,370 - -0.3 199,370 - +0.7 199,380 + +1.4 199,380 + -0.1 199,380 + -0.2 199,380 + -0.5 199,380 + +0.5 199,380 + +0.9 199,380 + +0.3 199,381 - -1.2 199,381 - +0.4 199,381 - -0.2 199,381 - -0.9 199,381 - -0.3 199,464 - +0.8 199,521 + +0.6 199,532 + -1.5 199,533 - -1.1 199,583 + PFLU_RS00885 0.27 -0.1 199,652 + PFLU_RS00885 0.52 -0.1 199,653 - PFLU_RS00885 0.52 -1.3 199,653 - PFLU_RS00885 0.52 +0.7 199,653 - PFLU_RS00885 0.52 +1.1 199,655 + PFLU_RS00885 0.53 -1.4 199,655 + PFLU_RS00885 0.53 -1.7 199,655 + PFLU_RS00885 0.53 +0.2 199,717 + PFLU_RS00885 0.76 +0.2 199,717 + PFLU_RS00885 0.76 +1.4 199,717 + PFLU_RS00885 0.76 +2.4 199,717 + PFLU_RS00885 0.76 +0.5 199,737 + PFLU_RS00885 0.83 +0.9 199,767 + +1.6 199,828 + PFLU_RS00890 0.17 +0.4 199,828 + PFLU_RS00890 0.17 +1.6 199,828 + PFLU_RS00890 0.17 -1.0 199,828 + PFLU_RS00890 0.17 -0.1 199,829 - PFLU_RS00890 0.18 -1.2 199,829 - PFLU_RS00890 0.18 -0.8 199,829 - PFLU_RS00890 0.18 +1.0 199,829 - PFLU_RS00890 0.18 +1.8 199,829 - PFLU_RS00890 0.18 +0.2 199,829 - PFLU_RS00890 0.18 +0.8 199,877 + PFLU_RS00890 0.34 +0.3 199,878 - PFLU_RS00890 0.35 +0.0 199,914 - PFLU_RS00890 0.47 +1.2 199,923 + PFLU_RS00890 0.51 -2.5 199,979 + PFLU_RS00890 0.70 +1.3 199,980 - PFLU_RS00890 0.71 -0.1 199,994 + PFLU_RS00890 0.75 +0.6 200,104 + -1.1 200,104 + -1.7 200,104 + -0.1 200,104 + +1.0 200,104 + +1.3 200,104 + +1.4 200,104 + -0.5 200,104 + -0.1 200,104 + +0.9 200,104 + +0.2 200,104 + +0.3 200,104 + -1.2 200,105 - +1.3 200,105 - +2.4 200,105 - -1.8 200,105 - +1.0 200,105 - -1.7 200,115 + PFLU_RS31360 0.11 -0.1 200,116 - PFLU_RS31360 0.12 +0.3 200,116 - PFLU_RS31360 0.12 +0.9 200,227 + PFLU_RS31360 0.34 +0.3 200,227 + PFLU_RS31360 0.34 +1.3 200,227 + PFLU_RS31360 0.34 +0.3 200,228 - PFLU_RS31360 0.35 -0.6 200,228 - PFLU_RS31360 0.35 +0.1 200,228 - PFLU_RS31360 0.35 -0.8 200,228 - PFLU_RS31360 0.35 -0.9 200,228 - PFLU_RS31360 0.35 +0.2 200,228 - PFLU_RS31360 0.35 +0.3 200,228 - PFLU_RS31360 0.35 -1.2 200,296 + PFLU_RS31360 0.49 +0.2 200,296 + PFLU_RS31360 0.49 +0.9 200,352 + PFLU_RS31360 0.60 -0.3 200,353 - PFLU_RS31360 0.60 -2.1 200,353 - PFLU_RS31360 0.60 -0.3 200,359 + PFLU_RS31360 0.62 +0.4 200,359 + PFLU_RS31360 0.62 -0.0 200,359 + PFLU_RS31360 0.62 -0.3 200,360 - PFLU_RS31360 0.62 -1.2 200,360 - PFLU_RS31360 0.62 +0.3 200,360 - PFLU_RS31360 0.62 +0.2 200,360 - PFLU_RS31360 0.62 -0.1 200,429 - PFLU_RS31360 0.76 +1.3 200,547 + -2.0 200,547 + +0.4 200,547 + +0.8 200,548 - +0.1 200,548 - -0.5 200,548 - +1.1 200,553 + -0.3 200,666 + PFLU_RS00895 0.24 -1.3 200,666 + PFLU_RS00895 0.24 +0.0 200,666 + PFLU_RS00895 0.24 +1.0 200,666 + PFLU_RS00895 0.24 +1.6 200,667 - PFLU_RS00895 0.24 +2.1 200,959 - PFLU_RS30335 0.20 +0.2 200,988 - PFLU_RS30335 0.29 +0.7 200,990 + PFLU_RS30335 0.30 -0.4 200,991 - PFLU_RS30335 0.30 +1.3 200,991 - PFLU_RS30335 0.30 +1.1 200,991 - PFLU_RS30335 0.30 +1.3 200,991 - PFLU_RS30335 0.30 -0.1 201,039 + PFLU_RS30335 0.45 +1.0 201,039 + PFLU_RS30335 0.45 -1.2 201,039 + PFLU_RS30335 0.45 -0.7 201,039 + PFLU_RS30335 0.45 -1.5 201,039 + PFLU_RS30335 0.45 +1.2 201,039 + PFLU_RS30335 0.45 +0.9 201,039 + PFLU_RS30335 0.45 -1.1 201,039 + PFLU_RS30335 0.45 -2.0 201,040 - PFLU_RS30335 0.46 -0.5 201,040 - PFLU_RS30335 0.46 +1.5 201,040 - PFLU_RS30335 0.46 +2.1 201,040 - PFLU_RS30335 0.46 -0.1 201,040 - PFLU_RS30335 0.46 -0.2 201,040 - PFLU_RS30335 0.46 +1.4 201,040 - PFLU_RS30335 0.46 -1.1 201,040 - PFLU_RS30335 0.46 +0.5 201,047 - PFLU_RS30335 0.48 +1.4 201,047 - PFLU_RS30335 0.48 +0.7
Or see this region's nucleotide sequence