Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00745

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00740 and PFLU_RS00745 are separated by 2 nucleotidesPFLU_RS00745 and PFLU_RS00750 are separated by 2 nucleotidesPFLU_RS00750 and PFLU_RS00755 are separated by 376 nucleotides PFLU_RS00740: PFLU_RS00740 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 159,608 to 161,605 _RS00740 PFLU_RS00745: PFLU_RS00745 - poly-beta-1,6 N-acetyl-D-glucosamine synthase, at 161,608 to 162,948 _RS00745 PFLU_RS00750: PFLU_RS00750 - poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD, at 162,951 to 163,433 _RS00750 PFLU_RS00755: PFLU_RS00755 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 163,810 to 165,534 _RS00755 Position (kb) 161 162 163Strain fitness (log2 ratio) -2 -1 0 1 2at 160.703 kb on + strand, within PFLU_RS00740at 160.703 kb on + strand, within PFLU_RS00740at 160.703 kb on + strand, within PFLU_RS00740at 160.704 kb on - strand, within PFLU_RS00740at 160.704 kb on - strand, within PFLU_RS00740at 160.704 kb on - strand, within PFLU_RS00740at 160.728 kb on + strand, within PFLU_RS00740at 160.790 kb on + strand, within PFLU_RS00740at 160.790 kb on + strand, within PFLU_RS00740at 160.790 kb on + strand, within PFLU_RS00740at 160.790 kb on + strand, within PFLU_RS00740at 160.790 kb on + strand, within PFLU_RS00740at 160.790 kb on + strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.791 kb on - strand, within PFLU_RS00740at 160.892 kb on + strand, within PFLU_RS00740at 160.892 kb on + strand, within PFLU_RS00740at 160.892 kb on + strand, within PFLU_RS00740at 160.892 kb on + strand, within PFLU_RS00740at 160.946 kb on + strand, within PFLU_RS00740at 160.946 kb on + strand, within PFLU_RS00740at 160.946 kb on + strand, within PFLU_RS00740at 160.946 kb on + strand, within PFLU_RS00740at 160.947 kb on - strand, within PFLU_RS00740at 160.947 kb on - strand, within PFLU_RS00740at 160.947 kb on - strand, within PFLU_RS00740at 160.947 kb on - strand, within PFLU_RS00740at 160.947 kb on - strand, within PFLU_RS00740at 160.947 kb on - strand, within PFLU_RS00740at 160.947 kb on - strand, within PFLU_RS00740at 160.988 kb on + strand, within PFLU_RS00740at 160.988 kb on + strand, within PFLU_RS00740at 161.049 kb on - strand, within PFLU_RS00740at 161.071 kb on + strand, within PFLU_RS00740at 161.071 kb on + strand, within PFLU_RS00740at 161.135 kb on + strand, within PFLU_RS00740at 161.212 kb on + strand, within PFLU_RS00740at 161.212 kb on + strand, within PFLU_RS00740at 161.213 kb on - strand, within PFLU_RS00740at 161.213 kb on - strand, within PFLU_RS00740at 161.289 kb on - strand, within PFLU_RS00740at 161.289 kb on - strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.336 kb on + strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.337 kb on - strand, within PFLU_RS00740at 161.412 kb on + strandat 161.412 kb on + strandat 161.493 kb on + strandat 161.493 kb on + strandat 161.493 kb on + strandat 161.494 kb on - strandat 161.494 kb on - strandat 161.494 kb on - strandat 161.494 kb on - strandat 161.494 kb on - strandat 161.528 kb on + strandat 161.528 kb on + strandat 161.529 kb on - strandat 161.630 kb on + strandat 161.630 kb on + strandat 161.631 kb on - strandat 161.631 kb on - strandat 161.631 kb on - strandat 161.648 kb on + strandat 161.649 kb on - strandat 161.758 kb on + strand, within PFLU_RS00745at 161.758 kb on + strand, within PFLU_RS00745at 161.758 kb on + strand, within PFLU_RS00745at 161.759 kb on - strand, within PFLU_RS00745at 161.759 kb on - strand, within PFLU_RS00745at 161.759 kb on - strand, within PFLU_RS00745at 161.857 kb on + strand, within PFLU_RS00745at 161.857 kb on + strand, within PFLU_RS00745at 161.857 kb on + strand, within PFLU_RS00745at 161.857 kb on + strand, within PFLU_RS00745at 161.857 kb on + strand, within PFLU_RS00745at 161.857 kb on + strand, within PFLU_RS00745at 161.857 kb on + strand, within PFLU_RS00745at 161.857 kb on + strand, within PFLU_RS00745at 161.858 kb on - strand, within PFLU_RS00745at 161.858 kb on - strand, within PFLU_RS00745at 161.858 kb on - strand, within PFLU_RS00745at 161.858 kb on - strand, within PFLU_RS00745at 161.858 kb on - strand, within PFLU_RS00745at 161.858 kb on - strand, within PFLU_RS00745at 161.858 kb on - strand, within PFLU_RS00745at 161.858 kb on - strand, within PFLU_RS00745at 161.912 kb on - strand, within PFLU_RS00745at 162.079 kb on + strand, within PFLU_RS00745at 162.079 kb on + strand, within PFLU_RS00745at 162.079 kb on + strand, within PFLU_RS00745at 162.079 kb on + strand, within PFLU_RS00745at 162.114 kb on + strand, within PFLU_RS00745at 162.130 kb on + strand, within PFLU_RS00745at 162.130 kb on + strand, within PFLU_RS00745at 162.322 kb on - strand, within PFLU_RS00745at 162.347 kb on - strand, within PFLU_RS00745at 162.421 kb on + strand, within PFLU_RS00745at 162.422 kb on - strand, within PFLU_RS00745at 162.559 kb on + strand, within PFLU_RS00745at 162.560 kb on - strand, within PFLU_RS00745at 162.584 kb on - strand, within PFLU_RS00745at 162.584 kb on - strand, within PFLU_RS00745at 162.906 kb on - strandat 162.977 kb on + strandat 162.977 kb on + strandat 162.978 kb on - strandat 162.978 kb on - strandat 162.978 kb on - strandat 163.131 kb on + strand, within PFLU_RS00750at 163.132 kb on - strand, within PFLU_RS00750at 163.132 kb on - strand, within PFLU_RS00750at 163.132 kb on - strand, within PFLU_RS00750at 163.406 kb on + strandat 163.406 kb on + strandat 163.407 kb on - strandat 163.435 kb on + strandat 163.435 kb on + strandat 163.436 kb on - strandat 163.436 kb on - strandat 163.436 kb on - strandat 163.436 kb on - strandat 163.486 kb on + strandat 163.486 kb on + strandat 163.486 kb on + strandat 163.486 kb on + strandat 163.487 kb on - strandat 163.487 kb on - strandat 163.487 kb on - strandat 163.487 kb on - strandat 163.487 kb on - strandat 163.493 kb on + strandat 163.493 kb on + strandat 163.493 kb on + strandat 163.502 kb on - strandat 163.555 kb on + strandat 163.555 kb on + strandat 163.556 kb on - strandat 163.560 kb on + strandat 163.561 kb on - strandat 163.602 kb on - strandat 163.648 kb on - strandat 163.651 kb on - strandat 163.696 kb on + strandat 163.719 kb on + strandat 163.740 kb on + strandat 163.741 kb on - strandat 163.864 kb on + strandat 163.865 kb on - strandat 163.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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160,703 + PFLU_RS00740 0.55 +0.0
160,703 + PFLU_RS00740 0.55 -1.3
160,703 + PFLU_RS00740 0.55 +1.3
160,704 - PFLU_RS00740 0.55 -0.3
160,704 - PFLU_RS00740 0.55 +0.7
160,704 - PFLU_RS00740 0.55 -1.0
160,728 + PFLU_RS00740 0.56 +1.2
160,790 + PFLU_RS00740 0.59 +0.7
160,790 + PFLU_RS00740 0.59 -1.9
160,790 + PFLU_RS00740 0.59 +1.1
160,790 + PFLU_RS00740 0.59 +1.1
160,790 + PFLU_RS00740 0.59 +0.3
160,790 + PFLU_RS00740 0.59 +0.2
160,791 - PFLU_RS00740 0.59 -0.2
160,791 - PFLU_RS00740 0.59 +0.8
160,791 - PFLU_RS00740 0.59 +0.6
160,791 - PFLU_RS00740 0.59 +1.1
160,791 - PFLU_RS00740 0.59 +0.1
160,791 - PFLU_RS00740 0.59 +0.3
160,791 - PFLU_RS00740 0.59 +1.5
160,791 - PFLU_RS00740 0.59 -0.1
160,791 - PFLU_RS00740 0.59 +0.7
160,791 - PFLU_RS00740 0.59 +0.5
160,892 + PFLU_RS00740 0.64 +0.3
160,892 + PFLU_RS00740 0.64 +0.3
160,892 + PFLU_RS00740 0.64 +0.3
160,892 + PFLU_RS00740 0.64 -1.2
160,946 + PFLU_RS00740 0.67 +0.2
160,946 + PFLU_RS00740 0.67 +0.5
160,946 + PFLU_RS00740 0.67 -0.6
160,946 + PFLU_RS00740 0.67 -2.2
160,947 - PFLU_RS00740 0.67 -0.8
160,947 - PFLU_RS00740 0.67 +0.4
160,947 - PFLU_RS00740 0.67 +0.0
160,947 - PFLU_RS00740 0.67 +0.4
160,947 - PFLU_RS00740 0.67 -0.1
160,947 - PFLU_RS00740 0.67 -0.4
160,947 - PFLU_RS00740 0.67 +0.4
160,988 + PFLU_RS00740 0.69 +1.1
160,988 + PFLU_RS00740 0.69 +0.2
161,049 - PFLU_RS00740 0.72 +0.1
161,071 + PFLU_RS00740 0.73 -0.6
161,071 + PFLU_RS00740 0.73 -0.3
161,135 + PFLU_RS00740 0.76 +1.0
161,212 + PFLU_RS00740 0.80 +0.2
161,212 + PFLU_RS00740 0.80 -0.0
161,213 - PFLU_RS00740 0.80 -0.1
161,213 - PFLU_RS00740 0.80 -0.7
161,289 - PFLU_RS00740 0.84 -0.5
161,289 - PFLU_RS00740 0.84 -0.4
161,336 + PFLU_RS00740 0.86 +0.1
161,336 + PFLU_RS00740 0.86 -0.0
161,336 + PFLU_RS00740 0.86 +0.8
161,336 + PFLU_RS00740 0.86 -0.5
161,336 + PFLU_RS00740 0.86 +0.1
161,336 + PFLU_RS00740 0.86 +0.6
161,336 + PFLU_RS00740 0.86 +0.1
161,336 + PFLU_RS00740 0.86 -0.7
161,336 + PFLU_RS00740 0.86 -0.0
161,337 - PFLU_RS00740 0.87 +0.2
161,337 - PFLU_RS00740 0.87 -0.6
161,337 - PFLU_RS00740 0.87 +0.7
161,337 - PFLU_RS00740 0.87 +0.3
161,337 - PFLU_RS00740 0.87 -2.5
161,337 - PFLU_RS00740 0.87 -0.7
161,337 - PFLU_RS00740 0.87 -1.6
161,337 - PFLU_RS00740 0.87 +0.4
161,337 - PFLU_RS00740 0.87 +0.5
161,412 + +0.2
161,412 + -0.7
161,493 + +2.6
161,493 + -0.9
161,493 + -1.6
161,494 - +0.4
161,494 - +1.1
161,494 - -0.7
161,494 - +0.2
161,494 - +0.4
161,528 + -0.4
161,528 + +1.2
161,529 - -1.5
161,630 + -0.2
161,630 + +1.4
161,631 - +0.4
161,631 - -1.0
161,631 - +1.0
161,648 + +0.5
161,649 - -0.5
161,758 + PFLU_RS00745 0.11 -0.0
161,758 + PFLU_RS00745 0.11 +1.0
161,758 + PFLU_RS00745 0.11 -0.7
161,759 - PFLU_RS00745 0.11 +0.0
161,759 - PFLU_RS00745 0.11 -0.3
161,759 - PFLU_RS00745 0.11 -1.2
161,857 + PFLU_RS00745 0.19 -0.1
161,857 + PFLU_RS00745 0.19 +0.0
161,857 + PFLU_RS00745 0.19 -0.7
161,857 + PFLU_RS00745 0.19 +0.2
161,857 + PFLU_RS00745 0.19 +0.1
161,857 + PFLU_RS00745 0.19 -0.2
161,857 + PFLU_RS00745 0.19 +0.4
161,857 + PFLU_RS00745 0.19 +0.6
161,858 - PFLU_RS00745 0.19 -0.6
161,858 - PFLU_RS00745 0.19 +1.8
161,858 - PFLU_RS00745 0.19 -0.5
161,858 - PFLU_RS00745 0.19 +1.1
161,858 - PFLU_RS00745 0.19 -1.6
161,858 - PFLU_RS00745 0.19 +0.6
161,858 - PFLU_RS00745 0.19 +0.1
161,858 - PFLU_RS00745 0.19 +0.1
161,912 - PFLU_RS00745 0.23 -0.0
162,079 + PFLU_RS00745 0.35 -0.2
162,079 + PFLU_RS00745 0.35 +0.8
162,079 + PFLU_RS00745 0.35 -1.9
162,079 + PFLU_RS00745 0.35 +1.0
162,114 + PFLU_RS00745 0.38 -2.5
162,130 + PFLU_RS00745 0.39 -0.1
162,130 + PFLU_RS00745 0.39 -1.0
162,322 - PFLU_RS00745 0.53 -0.4
162,347 - PFLU_RS00745 0.55 +1.1
162,421 + PFLU_RS00745 0.61 -0.8
162,422 - PFLU_RS00745 0.61 +1.7
162,559 + PFLU_RS00745 0.71 +0.9
162,560 - PFLU_RS00745 0.71 -1.0
162,584 - PFLU_RS00745 0.73 +0.2
162,584 - PFLU_RS00745 0.73 +0.0
162,906 - +2.6
162,977 + -0.1
162,977 + -0.3
162,978 - -0.1
162,978 - +0.6
162,978 - -1.8
163,131 + PFLU_RS00750 0.37 +0.7
163,132 - PFLU_RS00750 0.37 +0.3
163,132 - PFLU_RS00750 0.37 -0.6
163,132 - PFLU_RS00750 0.37 -2.0
163,406 + +0.4
163,406 + +0.3
163,407 - -1.5
163,435 + +0.1
163,435 + -2.6
163,436 - +1.2
163,436 - -1.0
163,436 - +0.6
163,436 - +0.4
163,486 + -1.0
163,486 + -0.3
163,486 + -0.1
163,486 + -1.6
163,487 - -0.4
163,487 - +0.1
163,487 - +0.0
163,487 - +1.0
163,487 - -1.2
163,493 + -0.0
163,493 + -1.4
163,493 + +0.3
163,502 - -0.9
163,555 + -1.0
163,555 + +1.0
163,556 - +0.7
163,560 + -0.2
163,561 - +0.0
163,602 - -1.0
163,648 - -0.1
163,651 - -0.0
163,696 + -0.0
163,719 + +0.4
163,740 + +1.9
163,741 - -0.2
163,864 + -0.6
163,865 - +1.1
163,897 - +0.3

Or see this region's nucleotide sequence