Strain Fitness in Pseudomonas sp. S08-1 around OH686_20870

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_20865 and OH686_20870 overlap by 1 nucleotidesOH686_20870 and OH686_20875 are separated by 26 nucleotides OH686_20865: OH686_20865 - phosphoserine transaminase, at 4,265,424 to 4,266,509 _20865 OH686_20870: OH686_20870 - Chorismate mutase I / Prephenate dehydratase , at 4,266,509 to 4,267,606 _20870 OH686_20875: OH686_20875 - histidinol-phosphate transaminase, at 4,267,633 to 4,268,742 _20875 Position (kb) 4266 4267 4268Strain fitness (log2 ratio) -3 -2 -1 0 1at 4266.803 kb on + strand, within OH686_20870at 4267.091 kb on + strand, within OH686_20870at 4267.091 kb on + strand, within OH686_20870at 4267.092 kb on - strand, within OH686_20870at 4267.198 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.481 kb on + strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.482 kb on - strand, within OH686_20870at 4267.687 kb on + strandat 4267.687 kb on + strandat 4267.687 kb on + strandat 4267.687 kb on + strandat 4267.687 kb on + strandat 4267.932 kb on + strand, within OH686_20875at 4267.993 kb on + strand, within OH686_20875at 4267.993 kb on + strand, within OH686_20875at 4268.230 kb on + strand, within OH686_20875at 4268.230 kb on + strand, within OH686_20875at 4268.230 kb on + strand, within OH686_20875at 4268.230 kb on + strand, within OH686_20875at 4268.275 kb on + strand, within OH686_20875at 4268.326 kb on + strand, within OH686_20875at 4268.326 kb on + strand, within OH686_20875at 4268.326 kb on + strand, within OH686_20875at 4268.353 kb on + strand, within OH686_20875at 4268.464 kb on + strand, within OH686_20875at 4268.465 kb on - strand, within OH686_20875

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,266,803 + OH686_20870 0.27 -3.3
4,267,091 + OH686_20870 0.53 -0.7
4,267,091 + OH686_20870 0.53 -1.2
4,267,092 - OH686_20870 0.53 -0.5
4,267,198 + OH686_20870 0.63 -0.1
4,267,481 + OH686_20870 0.89 +1.1
4,267,481 + OH686_20870 0.89 -0.1
4,267,481 + OH686_20870 0.89 -2.0
4,267,481 + OH686_20870 0.89 -1.9
4,267,481 + OH686_20870 0.89 -3.6
4,267,481 + OH686_20870 0.89 -2.4
4,267,481 + OH686_20870 0.89 -1.5
4,267,481 + OH686_20870 0.89 -2.6
4,267,481 + OH686_20870 0.89 -2.5
4,267,481 + OH686_20870 0.89 -1.1
4,267,482 - OH686_20870 0.89 -0.7
4,267,482 - OH686_20870 0.89 -0.5
4,267,482 - OH686_20870 0.89 -1.7
4,267,482 - OH686_20870 0.89 -0.5
4,267,482 - OH686_20870 0.89 -0.5
4,267,687 + +1.5
4,267,687 + -0.1
4,267,687 + -0.6
4,267,687 + -0.5
4,267,687 + +0.5
4,267,932 + OH686_20875 0.27 -0.5
4,267,993 + OH686_20875 0.32 -0.8
4,267,993 + OH686_20875 0.32 -2.0
4,268,230 + OH686_20875 0.54 +0.3
4,268,230 + OH686_20875 0.54 -0.8
4,268,230 + OH686_20875 0.54 -0.9
4,268,230 + OH686_20875 0.54 +0.5
4,268,275 + OH686_20875 0.58 +0.0
4,268,326 + OH686_20875 0.62 -0.2
4,268,326 + OH686_20875 0.62 -0.3
4,268,326 + OH686_20875 0.62 -1.5
4,268,353 + OH686_20875 0.65 -1.0
4,268,464 + OH686_20875 0.75 +0.9
4,268,465 - OH686_20875 0.75 +0.1

Or see this region's nucleotide sequence