Strain Fitness in Pseudomonas sp. S08-1 around OH686_14365

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_14360 and OH686_14365 are separated by 45 nucleotidesOH686_14365 and OH686_14370 overlap by 4 nucleotidesOH686_14370 and OH686_14375 overlap by 4 nucleotides OH686_14360: OH686_14360 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 2,997,489 to 2,999,297 _14360 OH686_14365: OH686_14365 - dTDP-4-dehydrorhamnose reductase, at 2,999,343 to 3,000,209 _14365 OH686_14370: OH686_14370 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,000,206 to 3,000,751 _14370 OH686_14375: OH686_14375 - glucose-1-phosphate thymidylyltransferase, at 3,000,748 to 3,001,620 _14375 Position (kb) 2999 3000 3001Strain fitness (log2 ratio) -2 -1 0 1 2at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.375 kb on + strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.376 kb on - strand, within OH686_14360at 2998.716 kb on - strand, within OH686_14360at 2998.810 kb on + strand, within OH686_14360at 2998.810 kb on + strand, within OH686_14360at 2998.811 kb on - strand, within OH686_14360at 2998.811 kb on - strand, within OH686_14360at 2998.882 kb on + strand, within OH686_14360at 2998.882 kb on + strand, within OH686_14360at 2998.891 kb on + strand, within OH686_14360at 2998.891 kb on + strand, within OH686_14360at 2998.891 kb on + strand, within OH686_14360at 2998.891 kb on + strand, within OH686_14360at 2998.892 kb on - strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.972 kb on + strand, within OH686_14360at 2998.973 kb on - strand, within OH686_14360at 2998.973 kb on - strand, within OH686_14360at 2998.973 kb on - strand, within OH686_14360at 2998.973 kb on - strand, within OH686_14360at 2998.973 kb on - strand, within OH686_14360at 2998.973 kb on - strand, within OH686_14360at 2998.973 kb on - strand, within OH686_14360at 2999.111 kb on - strand, within OH686_14360at 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.143 kb on + strandat 2999.144 kb on - strandat 2999.144 kb on - strandat 2999.144 kb on - strandat 2999.144 kb on - strandat 2999.144 kb on - strandat 2999.144 kb on - strandat 2999.188 kb on + strandat 2999.189 kb on - strandat 2999.189 kb on - strandat 2999.189 kb on - strandat 2999.191 kb on + strandat 2999.191 kb on + strandat 2999.192 kb on - strandat 2999.192 kb on - strandat 2999.192 kb on - strandat 2999.192 kb on - strandat 2999.288 kb on + strandat 2999.288 kb on + strandat 2999.288 kb on + strandat 2999.288 kb on + strandat 2999.288 kb on + strandat 2999.289 kb on - strandat 2999.289 kb on - strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.299 kb on + strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.300 kb on - strandat 2999.327 kb on + strandat 2999.327 kb on + strandat 2999.327 kb on + strandat 2999.327 kb on + strandat 2999.328 kb on - strandat 2999.328 kb on - strandat 2999.328 kb on - strandat 2999.328 kb on - strandat 3000.720 kb on - strandat 3000.779 kb on + strandat 3000.779 kb on + strandat 3000.779 kb on + strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.780 kb on - strandat 3000.817 kb on + strandat 3000.818 kb on - strandat 3000.915 kb on - strand, within OH686_14375at 3000.915 kb on - strand, within OH686_14375at 3000.915 kb on - strand, within OH686_14375at 3001.011 kb on - strand, within OH686_14375at 3001.011 kb on - strand, within OH686_14375at 3001.101 kb on - strand, within OH686_14375at 3001.101 kb on - strand, within OH686_14375at 3001.101 kb on - strand, within OH686_14375

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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2,998,375 + OH686_14360 0.49 -1.4
2,998,375 + OH686_14360 0.49 -0.6
2,998,375 + OH686_14360 0.49 -0.4
2,998,375 + OH686_14360 0.49 +0.5
2,998,375 + OH686_14360 0.49 -0.1
2,998,375 + OH686_14360 0.49 +0.3
2,998,375 + OH686_14360 0.49 -0.9
2,998,375 + OH686_14360 0.49 +0.0
2,998,375 + OH686_14360 0.49 +0.3
2,998,375 + OH686_14360 0.49 -0.4
2,998,376 - OH686_14360 0.49 +0.0
2,998,376 - OH686_14360 0.49 +0.0
2,998,376 - OH686_14360 0.49 +1.2
2,998,376 - OH686_14360 0.49 -0.2
2,998,376 - OH686_14360 0.49 -0.4
2,998,376 - OH686_14360 0.49 -0.5
2,998,376 - OH686_14360 0.49 +0.8
2,998,376 - OH686_14360 0.49 -0.4
2,998,376 - OH686_14360 0.49 -0.8
2,998,376 - OH686_14360 0.49 -0.4
2,998,376 - OH686_14360 0.49 -0.0
2,998,376 - OH686_14360 0.49 +0.2
2,998,376 - OH686_14360 0.49 -1.2
2,998,376 - OH686_14360 0.49 -0.2
2,998,716 - OH686_14360 0.68 +0.9
2,998,810 + OH686_14360 0.73 -0.5
2,998,810 + OH686_14360 0.73 -0.6
2,998,811 - OH686_14360 0.73 -0.3
2,998,811 - OH686_14360 0.73 +0.9
2,998,882 + OH686_14360 0.77 -1.1
2,998,882 + OH686_14360 0.77 +0.0
2,998,891 + OH686_14360 0.78 +0.3
2,998,891 + OH686_14360 0.78 -0.1
2,998,891 + OH686_14360 0.78 -0.5
2,998,891 + OH686_14360 0.78 -1.1
2,998,892 - OH686_14360 0.78 +0.1
2,998,972 + OH686_14360 0.82 -1.0
2,998,972 + OH686_14360 0.82 +0.0
2,998,972 + OH686_14360 0.82 -0.5
2,998,972 + OH686_14360 0.82 -0.4
2,998,972 + OH686_14360 0.82 +0.0
2,998,972 + OH686_14360 0.82 -0.2
2,998,972 + OH686_14360 0.82 -0.1
2,998,972 + OH686_14360 0.82 -1.0
2,998,972 + OH686_14360 0.82 -0.2
2,998,972 + OH686_14360 0.82 +1.1
2,998,972 + OH686_14360 0.82 -0.9
2,998,973 - OH686_14360 0.82 +0.5
2,998,973 - OH686_14360 0.82 +0.0
2,998,973 - OH686_14360 0.82 -0.1
2,998,973 - OH686_14360 0.82 -0.4
2,998,973 - OH686_14360 0.82 -0.3
2,998,973 - OH686_14360 0.82 -0.6
2,998,973 - OH686_14360 0.82 -0.6
2,999,111 - OH686_14360 0.90 -0.3
2,999,143 + -1.4
2,999,143 + +0.2
2,999,143 + +0.9
2,999,143 + +1.6
2,999,143 + -1.4
2,999,143 + -0.0
2,999,143 + +2.5
2,999,143 + -0.4
2,999,143 + -0.8
2,999,143 + -0.4
2,999,144 - -0.1
2,999,144 - -1.5
2,999,144 - +1.4
2,999,144 - +0.4
2,999,144 - -0.9
2,999,144 - -0.2
2,999,188 + +0.2
2,999,189 - +0.4
2,999,189 - +0.7
2,999,189 - +0.0
2,999,191 + -0.2
2,999,191 + +0.1
2,999,192 - -2.5
2,999,192 - +0.6
2,999,192 - -0.9
2,999,192 - -0.6
2,999,288 + +0.7
2,999,288 + -1.0
2,999,288 + +0.4
2,999,288 + -0.2
2,999,288 + -0.6
2,999,289 - +0.1
2,999,289 - -1.6
2,999,299 + +0.9
2,999,299 + -0.7
2,999,299 + -0.9
2,999,299 + -1.0
2,999,299 + -0.8
2,999,299 + +0.6
2,999,299 + -1.0
2,999,299 + -0.2
2,999,299 + +0.1
2,999,299 + -0.6
2,999,299 + +1.5
2,999,299 + +0.0
2,999,299 + -0.6
2,999,299 + -1.4
2,999,299 + +0.5
2,999,299 + +0.3
2,999,299 + +1.2
2,999,299 + -0.1
2,999,299 + +0.1
2,999,299 + +0.7
2,999,299 + +0.0
2,999,299 + -0.7
2,999,299 + +0.2
2,999,299 + -0.2
2,999,299 + +0.2
2,999,299 + -1.6
2,999,300 - +1.8
2,999,300 - +0.1
2,999,300 - -0.7
2,999,300 - -0.3
2,999,300 - -1.9
2,999,300 - +1.3
2,999,300 - -0.2
2,999,300 - -0.5
2,999,300 - -1.0
2,999,300 - +0.2
2,999,300 - -0.3
2,999,300 - +0.9
2,999,300 - -0.4
2,999,300 - +0.2
2,999,300 - -1.1
2,999,300 - +0.1
2,999,300 - -0.2
2,999,300 - -0.6
2,999,300 - +0.3
2,999,300 - +0.7
2,999,300 - -0.1
2,999,300 - +0.1
2,999,300 - -0.0
2,999,300 - +0.5
2,999,300 - -0.3
2,999,327 + -1.1
2,999,327 + +0.4
2,999,327 + -0.5
2,999,327 + -0.2
2,999,328 - -0.3
2,999,328 - -0.0
2,999,328 - -1.3
2,999,328 - +0.4
3,000,720 - -0.1
3,000,779 + +0.1
3,000,779 + -0.1
3,000,779 + +0.3
3,000,780 - -0.3
3,000,780 - +0.3
3,000,780 - +0.2
3,000,780 - -0.0
3,000,780 - +0.5
3,000,780 - +0.5
3,000,780 - -1.4
3,000,817 + -0.1
3,000,818 - -0.8
3,000,915 - OH686_14375 0.19 -0.1
3,000,915 - OH686_14375 0.19 -0.4
3,000,915 - OH686_14375 0.19 +0.9
3,001,011 - OH686_14375 0.30 -0.1
3,001,011 - OH686_14375 0.30 +1.2
3,001,101 - OH686_14375 0.40 +1.6
3,001,101 - OH686_14375 0.40 +0.9
3,001,101 - OH686_14375 0.40 +1.3

Or see this region's nucleotide sequence