Strain Fitness in Pseudomonas sp. S08-1 around OH686_09575

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09570 and OH686_09575 are separated by 60 nucleotidesOH686_09575 and OH686_09580 are separated by 44 nucleotides OH686_09570: OH686_09570 - 3-deoxy-D-manno-octulosonic acid transferase , at 1,955,921 to 1,957,195 _09570 OH686_09575: OH686_09575 - small multidrug resistance family (SMR) protein, at 1,957,256 to 1,957,588 _09575 OH686_09580: OH686_09580 - Oxidoreductase, FAD-binding, at 1,957,633 to 1,958,808 _09580 Position (kb) 1957 1958Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1957.208 kb on + strandat 1957.208 kb on + strandat 1957.208 kb on + strandat 1957.209 kb on - strandat 1957.209 kb on - strandat 1957.209 kb on - strandat 1957.265 kb on + strandat 1957.271 kb on + strandat 1957.271 kb on + strandat 1957.271 kb on + strandat 1957.271 kb on + strandat 1957.272 kb on - strandat 1957.272 kb on - strandat 1957.272 kb on - strandat 1957.272 kb on - strandat 1957.373 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.433 kb on + strand, within OH686_09575at 1957.434 kb on - strand, within OH686_09575at 1957.434 kb on - strand, within OH686_09575at 1957.434 kb on - strand, within OH686_09575at 1957.434 kb on - strand, within OH686_09575at 1957.434 kb on - strand, within OH686_09575at 1957.434 kb on - strand, within OH686_09575at 1957.434 kb on - strand, within OH686_09575at 1957.486 kb on + strand, within OH686_09575at 1957.486 kb on + strand, within OH686_09575at 1957.487 kb on - strand, within OH686_09575at 1957.487 kb on - strand, within OH686_09575at 1957.487 kb on - strand, within OH686_09575at 1957.487 kb on - strand, within OH686_09575at 1957.490 kb on + strand, within OH686_09575at 1957.490 kb on + strand, within OH686_09575at 1957.490 kb on + strand, within OH686_09575at 1957.491 kb on - strand, within OH686_09575at 1957.491 kb on - strand, within OH686_09575at 1957.599 kb on + strandat 1957.599 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.601 kb on + strandat 1957.602 kb on - strandat 1957.602 kb on - strandat 1957.602 kb on - strandat 1957.602 kb on - strandat 1957.602 kb on - strandat 1957.602 kb on - strandat 1957.602 kb on - strandat 1957.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,957,208 + -0.5
1,957,208 + +0.5
1,957,208 + -0.1
1,957,209 - -2.8
1,957,209 - -2.5
1,957,209 - -0.6
1,957,265 + +0.8
1,957,271 + -1.6
1,957,271 + -0.4
1,957,271 + +0.5
1,957,271 + +0.3
1,957,272 - +0.4
1,957,272 - +0.2
1,957,272 - -0.4
1,957,272 - +2.0
1,957,373 + OH686_09575 0.35 -0.7
1,957,433 + OH686_09575 0.53 -0.3
1,957,433 + OH686_09575 0.53 -0.2
1,957,433 + OH686_09575 0.53 +0.7
1,957,433 + OH686_09575 0.53 +0.2
1,957,433 + OH686_09575 0.53 +0.5
1,957,433 + OH686_09575 0.53 +0.0
1,957,433 + OH686_09575 0.53 -0.2
1,957,433 + OH686_09575 0.53 +0.4
1,957,433 + OH686_09575 0.53 -1.0
1,957,433 + OH686_09575 0.53 +0.6
1,957,433 + OH686_09575 0.53 +0.6
1,957,434 - OH686_09575 0.53 +0.4
1,957,434 - OH686_09575 0.53 -0.7
1,957,434 - OH686_09575 0.53 +0.2
1,957,434 - OH686_09575 0.53 -0.3
1,957,434 - OH686_09575 0.53 -0.4
1,957,434 - OH686_09575 0.53 -1.0
1,957,434 - OH686_09575 0.53 +0.2
1,957,486 + OH686_09575 0.69 +1.1
1,957,486 + OH686_09575 0.69 +0.4
1,957,487 - OH686_09575 0.69 +0.9
1,957,487 - OH686_09575 0.69 -0.9
1,957,487 - OH686_09575 0.69 +0.0
1,957,487 - OH686_09575 0.69 -0.4
1,957,490 + OH686_09575 0.70 +0.4
1,957,490 + OH686_09575 0.70 -0.8
1,957,490 + OH686_09575 0.70 +0.1
1,957,491 - OH686_09575 0.71 +0.2
1,957,491 - OH686_09575 0.71 -1.4
1,957,599 + +0.2
1,957,599 + -1.1
1,957,601 + +0.5
1,957,601 + +0.2
1,957,601 + -1.5
1,957,601 + -0.4
1,957,601 + -0.8
1,957,601 + +0.0
1,957,601 + -1.4
1,957,601 + +0.1
1,957,601 + +0.9
1,957,601 + -0.4
1,957,602 - -0.9
1,957,602 - +1.3
1,957,602 - +0.1
1,957,602 - -0.9
1,957,602 - -0.6
1,957,602 - -1.4
1,957,602 - +0.0
1,957,602 - -0.1

Or see this region's nucleotide sequence