Strain Fitness in Pseudomonas sp. S08-1 around OH686_09295

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09285 and OH686_09290 are separated by 72 nucleotidesOH686_09290 and OH686_09295 overlap by 1 nucleotidesOH686_09295 and OH686_09300 are separated by 126 nucleotides OH686_09285: OH686_09285 - lipoyl synthase, at 1,896,908 to 1,897,960 _09285 OH686_09290: OH686_09290 - lipoyl(octanoyl) transferase, at 1,898,033 to 1,898,650 _09290 OH686_09295: OH686_09295 - Proposed lipoate regulatory protein YbeD, at 1,898,650 to 1,898,928 _09295 OH686_09300: OH686_09300 - D-alanyl-D-alanine carboxypeptidase , at 1,899,055 to 1,900,230 _09300 Position (kb) 1898 1899Strain fitness (log2 ratio) -1 0 1at 1897.891 kb on - strandat 1898.023 kb on + strandat 1898.024 kb on - strandat 1898.024 kb on - strandat 1898.024 kb on - strandat 1898.024 kb on - strandat 1898.024 kb on - strandat 1898.040 kb on + strandat 1898.651 kb on + strandat 1898.651 kb on + strandat 1898.651 kb on + strandat 1898.651 kb on + strandat 1898.651 kb on + strandat 1898.652 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1899.007 kb on + strandat 1899.056 kb on + strandat 1899.056 kb on + strandat 1899.056 kb on + strandat 1899.056 kb on + strandat 1899.056 kb on + strandat 1899.056 kb on + strandat 1899.057 kb on - strandat 1899.057 kb on - strandat 1899.057 kb on - strandat 1899.057 kb on - strandat 1899.057 kb on - strandat 1899.057 kb on - strandat 1899.057 kb on - strandat 1899.071 kb on + strandat 1899.071 kb on + strandat 1899.072 kb on - strandat 1899.072 kb on - strandat 1899.090 kb on + strandat 1899.090 kb on + strandat 1899.091 kb on - strandat 1899.091 kb on - strandat 1899.189 kb on + strand, within OH686_09300at 1899.189 kb on + strand, within OH686_09300at 1899.190 kb on - strand, within OH686_09300at 1899.371 kb on + strand, within OH686_09300at 1899.371 kb on + strand, within OH686_09300at 1899.371 kb on + strand, within OH686_09300at 1899.371 kb on + strand, within OH686_09300at 1899.371 kb on + strand, within OH686_09300at 1899.371 kb on + strand, within OH686_09300at 1899.371 kb on + strand, within OH686_09300at 1899.371 kb on + strand, within OH686_09300at 1899.372 kb on - strand, within OH686_09300at 1899.372 kb on - strand, within OH686_09300at 1899.372 kb on - strand, within OH686_09300at 1899.372 kb on - strand, within OH686_09300at 1899.372 kb on - strand, within OH686_09300at 1899.372 kb on - strand, within OH686_09300at 1899.372 kb on - strand, within OH686_09300at 1899.372 kb on - strand, within OH686_09300at 1899.404 kb on + strand, within OH686_09300at 1899.404 kb on + strand, within OH686_09300at 1899.404 kb on + strand, within OH686_09300at 1899.404 kb on + strand, within OH686_09300at 1899.405 kb on - strand, within OH686_09300at 1899.405 kb on - strand, within OH686_09300at 1899.405 kb on - strand, within OH686_09300at 1899.626 kb on + strand, within OH686_09300at 1899.626 kb on + strand, within OH686_09300at 1899.626 kb on + strand, within OH686_09300at 1899.626 kb on + strand, within OH686_09300at 1899.627 kb on - strand, within OH686_09300at 1899.635 kb on + strand, within OH686_09300at 1899.635 kb on + strand, within OH686_09300at 1899.635 kb on + strand, within OH686_09300at 1899.698 kb on + strand, within OH686_09300at 1899.698 kb on + strand, within OH686_09300at 1899.698 kb on + strand, within OH686_09300at 1899.699 kb on - strand, within OH686_09300at 1899.812 kb on + strand, within OH686_09300at 1899.812 kb on + strand, within OH686_09300at 1899.812 kb on + strand, within OH686_09300at 1899.813 kb on - strand, within OH686_09300at 1899.813 kb on - strand, within OH686_09300at 1899.813 kb on - strand, within OH686_09300at 1899.882 kb on + strand, within OH686_09300at 1899.883 kb on - strand, within OH686_09300

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,897,891 - -0.1
1,898,023 + -0.6
1,898,024 - -0.1
1,898,024 - -1.4
1,898,024 - -0.1
1,898,024 - +0.4
1,898,024 - -0.2
1,898,040 + +0.1
1,898,651 + -0.5
1,898,651 + +0.0
1,898,651 + -0.1
1,898,651 + +1.0
1,898,651 + +0.5
1,898,652 - -1.2
1,898,912 - -0.9
1,898,912 - +0.4
1,898,912 - -0.9
1,898,912 - -0.1
1,898,912 - -0.1
1,898,912 - +0.8
1,899,007 + -1.4
1,899,056 + +0.2
1,899,056 + -0.6
1,899,056 + -0.4
1,899,056 + -0.6
1,899,056 + -1.1
1,899,056 + -0.3
1,899,057 - +0.1
1,899,057 - +0.1
1,899,057 - -0.2
1,899,057 - +0.4
1,899,057 - -0.7
1,899,057 - -0.4
1,899,057 - -0.2
1,899,071 + +0.1
1,899,071 + -0.8
1,899,072 - -0.4
1,899,072 - -0.3
1,899,090 + -0.4
1,899,090 + -0.3
1,899,091 - +1.0
1,899,091 - -0.2
1,899,189 + OH686_09300 0.11 +0.0
1,899,189 + OH686_09300 0.11 -0.4
1,899,190 - OH686_09300 0.11 +0.6
1,899,371 + OH686_09300 0.27 -0.7
1,899,371 + OH686_09300 0.27 +0.4
1,899,371 + OH686_09300 0.27 -0.5
1,899,371 + OH686_09300 0.27 +0.1
1,899,371 + OH686_09300 0.27 -0.6
1,899,371 + OH686_09300 0.27 +0.0
1,899,371 + OH686_09300 0.27 -0.5
1,899,371 + OH686_09300 0.27 -0.0
1,899,372 - OH686_09300 0.27 +0.6
1,899,372 - OH686_09300 0.27 +0.0
1,899,372 - OH686_09300 0.27 -0.1
1,899,372 - OH686_09300 0.27 -0.4
1,899,372 - OH686_09300 0.27 +0.3
1,899,372 - OH686_09300 0.27 -0.2
1,899,372 - OH686_09300 0.27 +0.5
1,899,372 - OH686_09300 0.27 -0.7
1,899,404 + OH686_09300 0.30 -0.1
1,899,404 + OH686_09300 0.30 -0.3
1,899,404 + OH686_09300 0.30 -0.2
1,899,404 + OH686_09300 0.30 -0.1
1,899,405 - OH686_09300 0.30 -0.3
1,899,405 - OH686_09300 0.30 -0.2
1,899,405 - OH686_09300 0.30 -0.5
1,899,626 + OH686_09300 0.49 -1.3
1,899,626 + OH686_09300 0.49 -0.4
1,899,626 + OH686_09300 0.49 +0.3
1,899,626 + OH686_09300 0.49 -0.3
1,899,627 - OH686_09300 0.49 +0.5
1,899,635 + OH686_09300 0.49 -0.2
1,899,635 + OH686_09300 0.49 -0.1
1,899,635 + OH686_09300 0.49 -0.1
1,899,698 + OH686_09300 0.55 -0.0
1,899,698 + OH686_09300 0.55 +0.3
1,899,698 + OH686_09300 0.55 +0.1
1,899,699 - OH686_09300 0.55 +0.3
1,899,812 + OH686_09300 0.64 +0.9
1,899,812 + OH686_09300 0.64 -0.4
1,899,812 + OH686_09300 0.64 -0.2
1,899,813 - OH686_09300 0.64 +0.4
1,899,813 - OH686_09300 0.64 -0.7
1,899,813 - OH686_09300 0.64 -0.2
1,899,882 + OH686_09300 0.70 -0.8
1,899,883 - OH686_09300 0.70 -0.8

Or see this region's nucleotide sequence