Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_09285 and OH686_09290 are separated by 72 nucleotides OH686_09290 and OH686_09295 overlap by 1 nucleotides OH686_09295 and OH686_09300 are separated by 126 nucleotides
OH686_09285: OH686_09285 - lipoyl synthase, at 1,896,908 to 1,897,960
_09285
OH686_09290: OH686_09290 - lipoyl(octanoyl) transferase, at 1,898,033 to 1,898,650
_09290
OH686_09295: OH686_09295 - Proposed lipoate regulatory protein YbeD, at 1,898,650 to 1,898,928
_09295
OH686_09300: OH686_09300 - D-alanyl-D-alanine carboxypeptidase , at 1,899,055 to 1,900,230
_09300
Position (kb)
1898
1899 Strain fitness (log2 ratio)
-1
0
1 at 1897.891 kb on - strand at 1898.023 kb on + strand at 1898.024 kb on - strand at 1898.024 kb on - strand at 1898.024 kb on - strand at 1898.024 kb on - strand at 1898.024 kb on - strand at 1898.040 kb on + strand at 1898.651 kb on + strand at 1898.651 kb on + strand at 1898.651 kb on + strand at 1898.651 kb on + strand at 1898.651 kb on + strand at 1898.652 kb on - strand at 1898.912 kb on - strand at 1898.912 kb on - strand at 1898.912 kb on - strand at 1898.912 kb on - strand at 1898.912 kb on - strand at 1898.912 kb on - strand at 1899.007 kb on + strand at 1899.056 kb on + strand at 1899.056 kb on + strand at 1899.056 kb on + strand at 1899.056 kb on + strand at 1899.056 kb on + strand at 1899.056 kb on + strand at 1899.057 kb on - strand at 1899.057 kb on - strand at 1899.057 kb on - strand at 1899.057 kb on - strand at 1899.057 kb on - strand at 1899.057 kb on - strand at 1899.057 kb on - strand at 1899.071 kb on + strand at 1899.071 kb on + strand at 1899.072 kb on - strand at 1899.072 kb on - strand at 1899.090 kb on + strand at 1899.090 kb on + strand at 1899.091 kb on - strand at 1899.091 kb on - strand at 1899.189 kb on + strand, within OH686_09300 at 1899.189 kb on + strand, within OH686_09300 at 1899.190 kb on - strand, within OH686_09300 at 1899.371 kb on + strand, within OH686_09300 at 1899.371 kb on + strand, within OH686_09300 at 1899.371 kb on + strand, within OH686_09300 at 1899.371 kb on + strand, within OH686_09300 at 1899.371 kb on + strand, within OH686_09300 at 1899.371 kb on + strand, within OH686_09300 at 1899.371 kb on + strand, within OH686_09300 at 1899.371 kb on + strand, within OH686_09300 at 1899.372 kb on - strand, within OH686_09300 at 1899.372 kb on - strand, within OH686_09300 at 1899.372 kb on - strand, within OH686_09300 at 1899.372 kb on - strand, within OH686_09300 at 1899.372 kb on - strand, within OH686_09300 at 1899.372 kb on - strand, within OH686_09300 at 1899.372 kb on - strand, within OH686_09300 at 1899.372 kb on - strand, within OH686_09300 at 1899.404 kb on + strand, within OH686_09300 at 1899.404 kb on + strand, within OH686_09300 at 1899.404 kb on + strand, within OH686_09300 at 1899.404 kb on + strand, within OH686_09300 at 1899.405 kb on - strand, within OH686_09300 at 1899.405 kb on - strand, within OH686_09300 at 1899.405 kb on - strand, within OH686_09300 at 1899.626 kb on + strand, within OH686_09300 at 1899.626 kb on + strand, within OH686_09300 at 1899.626 kb on + strand, within OH686_09300 at 1899.626 kb on + strand, within OH686_09300 at 1899.627 kb on - strand, within OH686_09300 at 1899.635 kb on + strand, within OH686_09300 at 1899.635 kb on + strand, within OH686_09300 at 1899.635 kb on + strand, within OH686_09300 at 1899.698 kb on + strand, within OH686_09300 at 1899.698 kb on + strand, within OH686_09300 at 1899.698 kb on + strand, within OH686_09300 at 1899.699 kb on - strand, within OH686_09300 at 1899.812 kb on + strand, within OH686_09300 at 1899.812 kb on + strand, within OH686_09300 at 1899.812 kb on + strand, within OH686_09300 at 1899.813 kb on - strand, within OH686_09300 at 1899.813 kb on - strand, within OH686_09300 at 1899.813 kb on - strand, within OH686_09300 at 1899.882 kb on + strand, within OH686_09300 at 1899.883 kb on - strand, within OH686_09300
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,897,891 - -0.1 1,898,023 + -0.6 1,898,024 - -0.1 1,898,024 - -1.4 1,898,024 - -0.1 1,898,024 - +0.4 1,898,024 - -0.2 1,898,040 + +0.1 1,898,651 + -0.5 1,898,651 + +0.0 1,898,651 + -0.1 1,898,651 + +1.0 1,898,651 + +0.5 1,898,652 - -1.2 1,898,912 - -0.9 1,898,912 - +0.4 1,898,912 - -0.9 1,898,912 - -0.1 1,898,912 - -0.1 1,898,912 - +0.8 1,899,007 + -1.4 1,899,056 + +0.2 1,899,056 + -0.6 1,899,056 + -0.4 1,899,056 + -0.6 1,899,056 + -1.1 1,899,056 + -0.3 1,899,057 - +0.1 1,899,057 - +0.1 1,899,057 - -0.2 1,899,057 - +0.4 1,899,057 - -0.7 1,899,057 - -0.4 1,899,057 - -0.2 1,899,071 + +0.1 1,899,071 + -0.8 1,899,072 - -0.4 1,899,072 - -0.3 1,899,090 + -0.4 1,899,090 + -0.3 1,899,091 - +1.0 1,899,091 - -0.2 1,899,189 + OH686_09300 0.11 +0.0 1,899,189 + OH686_09300 0.11 -0.4 1,899,190 - OH686_09300 0.11 +0.6 1,899,371 + OH686_09300 0.27 -0.7 1,899,371 + OH686_09300 0.27 +0.4 1,899,371 + OH686_09300 0.27 -0.5 1,899,371 + OH686_09300 0.27 +0.1 1,899,371 + OH686_09300 0.27 -0.6 1,899,371 + OH686_09300 0.27 +0.0 1,899,371 + OH686_09300 0.27 -0.5 1,899,371 + OH686_09300 0.27 -0.0 1,899,372 - OH686_09300 0.27 +0.6 1,899,372 - OH686_09300 0.27 +0.0 1,899,372 - OH686_09300 0.27 -0.1 1,899,372 - OH686_09300 0.27 -0.4 1,899,372 - OH686_09300 0.27 +0.3 1,899,372 - OH686_09300 0.27 -0.2 1,899,372 - OH686_09300 0.27 +0.5 1,899,372 - OH686_09300 0.27 -0.7 1,899,404 + OH686_09300 0.30 -0.1 1,899,404 + OH686_09300 0.30 -0.3 1,899,404 + OH686_09300 0.30 -0.2 1,899,404 + OH686_09300 0.30 -0.1 1,899,405 - OH686_09300 0.30 -0.3 1,899,405 - OH686_09300 0.30 -0.2 1,899,405 - OH686_09300 0.30 -0.5 1,899,626 + OH686_09300 0.49 -1.3 1,899,626 + OH686_09300 0.49 -0.4 1,899,626 + OH686_09300 0.49 +0.3 1,899,626 + OH686_09300 0.49 -0.3 1,899,627 - OH686_09300 0.49 +0.5 1,899,635 + OH686_09300 0.49 -0.2 1,899,635 + OH686_09300 0.49 -0.1 1,899,635 + OH686_09300 0.49 -0.1 1,899,698 + OH686_09300 0.55 -0.0 1,899,698 + OH686_09300 0.55 +0.3 1,899,698 + OH686_09300 0.55 +0.1 1,899,699 - OH686_09300 0.55 +0.3 1,899,812 + OH686_09300 0.64 +0.9 1,899,812 + OH686_09300 0.64 -0.4 1,899,812 + OH686_09300 0.64 -0.2 1,899,813 - OH686_09300 0.64 +0.4 1,899,813 - OH686_09300 0.64 -0.7 1,899,813 - OH686_09300 0.64 -0.2 1,899,882 + OH686_09300 0.70 -0.8 1,899,883 - OH686_09300 0.70 -0.8
Or see this region's nucleotide sequence