Strain Fitness in Pseudomonas sp. S08-1 around OH686_09225

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09220 and OH686_09225 overlap by 8 nucleotidesOH686_09225 and OH686_09230 are separated by 27 nucleotides OH686_09220: OH686_09220 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,882,555 to 1,883,556 _09220 OH686_09225: OH686_09225 - probable rRNA maturation factor YbeY, at 1,883,549 to 1,884,007 _09225 OH686_09230: OH686_09230 - Magnesium and cobalt efflux protein CorC, at 1,884,035 to 1,884,871 _09230 Position (kb) 1883 1884 1885Strain fitness (log2 ratio) -2 -1 0 1 2at 1882.568 kb on + strandat 1882.568 kb on + strandat 1882.568 kb on + strandat 1882.568 kb on + strandat 1882.568 kb on + strandat 1882.568 kb on + strandat 1882.569 kb on - strandat 1882.569 kb on - strandat 1882.569 kb on - strandat 1882.569 kb on - strandat 1882.569 kb on - strandat 1882.569 kb on - strandat 1882.569 kb on - strandat 1882.597 kb on + strandat 1882.719 kb on + strand, within OH686_09220at 1882.719 kb on + strand, within OH686_09220at 1882.719 kb on + strand, within OH686_09220at 1882.719 kb on + strand, within OH686_09220at 1882.719 kb on + strand, within OH686_09220at 1882.719 kb on + strand, within OH686_09220at 1882.719 kb on + strand, within OH686_09220at 1882.719 kb on + strand, within OH686_09220at 1882.719 kb on + strand, within OH686_09220at 1882.720 kb on - strand, within OH686_09220at 1882.759 kb on + strand, within OH686_09220at 1882.760 kb on - strand, within OH686_09220at 1882.807 kb on + strand, within OH686_09220at 1882.808 kb on - strand, within OH686_09220at 1882.808 kb on - strand, within OH686_09220at 1882.808 kb on - strand, within OH686_09220at 1882.918 kb on + strand, within OH686_09220at 1882.918 kb on + strand, within OH686_09220at 1882.919 kb on - strand, within OH686_09220at 1882.919 kb on - strand, within OH686_09220at 1882.919 kb on - strand, within OH686_09220at 1882.984 kb on + strand, within OH686_09220at 1882.984 kb on + strand, within OH686_09220at 1882.984 kb on + strand, within OH686_09220at 1882.984 kb on + strand, within OH686_09220at 1882.984 kb on + strand, within OH686_09220at 1882.984 kb on + strand, within OH686_09220at 1882.984 kb on + strand, within OH686_09220at 1882.984 kb on + strand, within OH686_09220at 1882.985 kb on - strand, within OH686_09220at 1882.985 kb on - strand, within OH686_09220at 1882.985 kb on - strand, within OH686_09220at 1882.985 kb on - strand, within OH686_09220at 1883.120 kb on - strand, within OH686_09220at 1883.120 kb on - strand, within OH686_09220at 1883.146 kb on + strand, within OH686_09220at 1883.146 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.218 kb on + strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.219 kb on - strand, within OH686_09220at 1883.220 kb on + strand, within OH686_09220at 1883.220 kb on + strand, within OH686_09220at 1883.220 kb on + strand, within OH686_09220at 1883.220 kb on + strand, within OH686_09220at 1883.220 kb on + strand, within OH686_09220at 1883.220 kb on + strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.221 kb on - strand, within OH686_09220at 1883.434 kb on - strand, within OH686_09220at 1883.434 kb on - strand, within OH686_09220at 1883.494 kb on + strandat 1883.494 kb on + strandat 1884.005 kb on + strandat 1884.005 kb on + strandat 1884.005 kb on + strandat 1884.005 kb on + strandat 1884.005 kb on + strandat 1884.005 kb on + strandat 1884.006 kb on - strandat 1884.006 kb on - strandat 1884.006 kb on - strandat 1884.006 kb on - strandat 1884.006 kb on - strandat 1884.006 kb on - strandat 1884.006 kb on - strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.014 kb on + strandat 1884.015 kb on - strandat 1884.015 kb on - strandat 1884.015 kb on - strandat 1884.015 kb on - strandat 1884.015 kb on - strandat 1884.015 kb on - strandat 1884.015 kb on - strandat 1884.015 kb on - strandat 1884.186 kb on + strand, within OH686_09230at 1884.186 kb on + strand, within OH686_09230at 1884.187 kb on - strand, within OH686_09230at 1884.222 kb on + strand, within OH686_09230at 1884.222 kb on + strand, within OH686_09230at 1884.222 kb on + strand, within OH686_09230at 1884.222 kb on + strand, within OH686_09230at 1884.223 kb on - strand, within OH686_09230at 1884.223 kb on - strand, within OH686_09230at 1884.531 kb on - strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.567 kb on + strand, within OH686_09230at 1884.568 kb on - strand, within OH686_09230at 1884.568 kb on - strand, within OH686_09230at 1884.568 kb on - strand, within OH686_09230at 1884.568 kb on - strand, within OH686_09230at 1884.568 kb on - strand, within OH686_09230at 1884.568 kb on - strand, within OH686_09230at 1884.568 kb on - strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.623 kb on + strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.624 kb on - strand, within OH686_09230at 1884.801 kb on - strandat 1884.928 kb on + strandat 1884.928 kb on + strandat 1884.928 kb on + strandat 1884.928 kb on + strandat 1884.928 kb on + strandat 1884.929 kb on - strandat 1884.929 kb on - strandat 1884.929 kb on - strandat 1884.929 kb on - strandat 1884.929 kb on - strandat 1884.941 kb on + strandat 1884.941 kb on + strandat 1884.950 kb on - strandat 1884.978 kb on + strandat 1884.979 kb on - strandat 1884.979 kb on - strandat 1884.979 kb on - strandat 1884.979 kb on - strandat 1884.979 kb on - strandat 1884.979 kb on - strandat 1884.990 kb on + strandat 1884.990 kb on + strandat 1884.990 kb on + strandat 1884.990 kb on + strandat 1884.991 kb on - strandat 1884.991 kb on - strandat 1884.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,882,568 + +0.1
1,882,568 + -1.1
1,882,568 + +0.3
1,882,568 + +0.7
1,882,568 + +0.5
1,882,568 + +0.9
1,882,569 - +0.3
1,882,569 - -0.7
1,882,569 - -0.4
1,882,569 - -2.6
1,882,569 - -0.0
1,882,569 - -0.6
1,882,569 - -1.0
1,882,597 + -0.6
1,882,719 + OH686_09220 0.16 -0.4
1,882,719 + OH686_09220 0.16 +0.7
1,882,719 + OH686_09220 0.16 +0.1
1,882,719 + OH686_09220 0.16 -1.0
1,882,719 + OH686_09220 0.16 +0.5
1,882,719 + OH686_09220 0.16 -0.5
1,882,719 + OH686_09220 0.16 -0.6
1,882,719 + OH686_09220 0.16 -1.6
1,882,719 + OH686_09220 0.16 -0.4
1,882,720 - OH686_09220 0.16 -0.1
1,882,759 + OH686_09220 0.20 +0.6
1,882,760 - OH686_09220 0.20 +0.1
1,882,807 + OH686_09220 0.25 -0.3
1,882,808 - OH686_09220 0.25 -0.4
1,882,808 - OH686_09220 0.25 -0.4
1,882,808 - OH686_09220 0.25 -0.1
1,882,918 + OH686_09220 0.36 +2.0
1,882,918 + OH686_09220 0.36 -0.3
1,882,919 - OH686_09220 0.36 -2.0
1,882,919 - OH686_09220 0.36 -0.1
1,882,919 - OH686_09220 0.36 -0.1
1,882,984 + OH686_09220 0.43 -0.5
1,882,984 + OH686_09220 0.43 +0.3
1,882,984 + OH686_09220 0.43 -1.2
1,882,984 + OH686_09220 0.43 +0.9
1,882,984 + OH686_09220 0.43 -0.7
1,882,984 + OH686_09220 0.43 +0.2
1,882,984 + OH686_09220 0.43 -0.4
1,882,984 + OH686_09220 0.43 +0.2
1,882,985 - OH686_09220 0.43 -0.4
1,882,985 - OH686_09220 0.43 -0.7
1,882,985 - OH686_09220 0.43 -0.4
1,882,985 - OH686_09220 0.43 -0.9
1,883,120 - OH686_09220 0.56 -0.5
1,883,120 - OH686_09220 0.56 -0.1
1,883,146 + OH686_09220 0.59 -0.0
1,883,146 + OH686_09220 0.59 +0.3
1,883,218 + OH686_09220 0.66 -0.3
1,883,218 + OH686_09220 0.66 -0.2
1,883,218 + OH686_09220 0.66 +0.3
1,883,218 + OH686_09220 0.66 -0.7
1,883,218 + OH686_09220 0.66 +0.1
1,883,218 + OH686_09220 0.66 -0.3
1,883,218 + OH686_09220 0.66 +0.3
1,883,218 + OH686_09220 0.66 -0.8
1,883,218 + OH686_09220 0.66 +0.1
1,883,218 + OH686_09220 0.66 +1.1
1,883,218 + OH686_09220 0.66 -0.1
1,883,218 + OH686_09220 0.66 -0.7
1,883,218 + OH686_09220 0.66 -0.7
1,883,218 + OH686_09220 0.66 -0.2
1,883,219 - OH686_09220 0.66 -0.1
1,883,219 - OH686_09220 0.66 +0.8
1,883,219 - OH686_09220 0.66 -0.8
1,883,219 - OH686_09220 0.66 -0.7
1,883,219 - OH686_09220 0.66 +0.4
1,883,219 - OH686_09220 0.66 -0.7
1,883,219 - OH686_09220 0.66 -0.7
1,883,219 - OH686_09220 0.66 -0.4
1,883,219 - OH686_09220 0.66 +1.6
1,883,219 - OH686_09220 0.66 -0.1
1,883,219 - OH686_09220 0.66 -1.8
1,883,219 - OH686_09220 0.66 +0.3
1,883,220 + OH686_09220 0.66 -0.2
1,883,220 + OH686_09220 0.66 -0.9
1,883,220 + OH686_09220 0.66 +0.1
1,883,220 + OH686_09220 0.66 +1.1
1,883,220 + OH686_09220 0.66 -1.0
1,883,220 + OH686_09220 0.66 -0.4
1,883,221 - OH686_09220 0.66 -1.8
1,883,221 - OH686_09220 0.66 -0.2
1,883,221 - OH686_09220 0.66 +0.6
1,883,221 - OH686_09220 0.66 -0.3
1,883,221 - OH686_09220 0.66 -0.0
1,883,221 - OH686_09220 0.66 -0.1
1,883,221 - OH686_09220 0.66 -0.0
1,883,221 - OH686_09220 0.66 -0.1
1,883,221 - OH686_09220 0.66 +0.9
1,883,221 - OH686_09220 0.66 +0.1
1,883,434 - OH686_09220 0.88 -0.5
1,883,434 - OH686_09220 0.88 +0.5
1,883,494 + -0.1
1,883,494 + -0.2
1,884,005 + -0.4
1,884,005 + +0.1
1,884,005 + -0.1
1,884,005 + +0.7
1,884,005 + +0.5
1,884,005 + -0.1
1,884,006 - -0.3
1,884,006 - +0.7
1,884,006 - -0.1
1,884,006 - -0.6
1,884,006 - +0.4
1,884,006 - -0.8
1,884,006 - -0.2
1,884,014 + -0.4
1,884,014 + +0.8
1,884,014 + -0.3
1,884,014 + +0.0
1,884,014 + -0.2
1,884,014 + -0.8
1,884,014 + -0.4
1,884,014 + +0.5
1,884,014 + +0.9
1,884,014 + -0.4
1,884,014 + -0.1
1,884,015 - -0.1
1,884,015 - +0.1
1,884,015 - +1.4
1,884,015 - -0.9
1,884,015 - +0.3
1,884,015 - +0.1
1,884,015 - -0.3
1,884,015 - +0.7
1,884,186 + OH686_09230 0.18 -1.3
1,884,186 + OH686_09230 0.18 +0.2
1,884,187 - OH686_09230 0.18 +1.0
1,884,222 + OH686_09230 0.22 -1.3
1,884,222 + OH686_09230 0.22 -0.4
1,884,222 + OH686_09230 0.22 -0.3
1,884,222 + OH686_09230 0.22 -0.1
1,884,223 - OH686_09230 0.22 +0.9
1,884,223 - OH686_09230 0.22 +0.9
1,884,531 - OH686_09230 0.59 +1.0
1,884,567 + OH686_09230 0.64 +0.4
1,884,567 + OH686_09230 0.64 -2.0
1,884,567 + OH686_09230 0.64 -1.0
1,884,567 + OH686_09230 0.64 +0.1
1,884,567 + OH686_09230 0.64 +2.1
1,884,567 + OH686_09230 0.64 -1.1
1,884,567 + OH686_09230 0.64 -1.7
1,884,567 + OH686_09230 0.64 -0.5
1,884,567 + OH686_09230 0.64 +0.4
1,884,567 + OH686_09230 0.64 +0.4
1,884,567 + OH686_09230 0.64 +0.2
1,884,567 + OH686_09230 0.64 +0.6
1,884,568 - OH686_09230 0.64 +1.5
1,884,568 - OH686_09230 0.64 -0.1
1,884,568 - OH686_09230 0.64 -0.5
1,884,568 - OH686_09230 0.64 +0.7
1,884,568 - OH686_09230 0.64 +0.7
1,884,568 - OH686_09230 0.64 -0.6
1,884,568 - OH686_09230 0.64 -0.3
1,884,623 + OH686_09230 0.70 +1.5
1,884,623 + OH686_09230 0.70 +0.8
1,884,623 + OH686_09230 0.70 -0.4
1,884,623 + OH686_09230 0.70 -1.4
1,884,623 + OH686_09230 0.70 -0.4
1,884,623 + OH686_09230 0.70 -0.3
1,884,623 + OH686_09230 0.70 -1.4
1,884,623 + OH686_09230 0.70 +0.6
1,884,623 + OH686_09230 0.70 -1.8
1,884,623 + OH686_09230 0.70 -0.1
1,884,623 + OH686_09230 0.70 +0.2
1,884,623 + OH686_09230 0.70 +0.2
1,884,623 + OH686_09230 0.70 +1.2
1,884,623 + OH686_09230 0.70 +1.5
1,884,623 + OH686_09230 0.70 +0.5
1,884,623 + OH686_09230 0.70 +1.3
1,884,624 - OH686_09230 0.70 -1.1
1,884,624 - OH686_09230 0.70 -0.1
1,884,624 - OH686_09230 0.70 +1.6
1,884,624 - OH686_09230 0.70 +1.9
1,884,624 - OH686_09230 0.70 +1.5
1,884,624 - OH686_09230 0.70 -1.1
1,884,624 - OH686_09230 0.70 -0.5
1,884,624 - OH686_09230 0.70 +1.0
1,884,624 - OH686_09230 0.70 -0.4
1,884,624 - OH686_09230 0.70 -0.6
1,884,624 - OH686_09230 0.70 +1.6
1,884,624 - OH686_09230 0.70 -0.1
1,884,801 - +1.9
1,884,928 + -0.2
1,884,928 + -1.8
1,884,928 + +0.3
1,884,928 + +0.2
1,884,928 + -0.3
1,884,929 - -0.1
1,884,929 - -0.9
1,884,929 - -0.5
1,884,929 - -0.1
1,884,929 - -0.4
1,884,941 + -0.3
1,884,941 + -0.6
1,884,950 - +0.9
1,884,978 + -0.2
1,884,979 - +0.1
1,884,979 - +0.0
1,884,979 - -0.5
1,884,979 - -0.9
1,884,979 - -0.6
1,884,979 - -0.5
1,884,990 + +0.7
1,884,990 + +0.3
1,884,990 + -0.8
1,884,990 + -1.1
1,884,991 - -0.8
1,884,991 - -0.0
1,884,991 - +1.1

Or see this region's nucleotide sequence