Strain Fitness in Pseudomonas sp. S08-1 around OH686_09175

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09175 and OH686_09180 are separated by 207 nucleotides OH686_09175: OH686_09175 - CDS, at 1,872,811 to 1,873,821 _09175 OH686_09180: OH686_09180 - Two-component system sensor histidine kinase, at 1,874,029 to 1,876,440 _09180 Position (kb) 1872 1873 1874Strain fitness (log2 ratio) -2 -1 0 1at 1871.832 kb on - strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.853 kb on + strandat 1871.854 kb on - strandat 1871.854 kb on - strandat 1871.854 kb on - strandat 1871.854 kb on - strandat 1871.854 kb on - strandat 1871.854 kb on - strandat 1871.854 kb on - strandat 1871.854 kb on - strandat 1871.866 kb on + strandat 1871.866 kb on + strandat 1871.866 kb on + strandat 1871.866 kb on + strandat 1871.866 kb on + strandat 1871.867 kb on - strandat 1871.867 kb on - strandat 1871.867 kb on - strandat 1871.899 kb on + strandat 1871.899 kb on + strandat 1871.899 kb on + strandat 1871.899 kb on + strandat 1871.900 kb on - strandat 1871.911 kb on + strandat 1871.912 kb on - strandat 1871.912 kb on - strandat 1871.912 kb on - strandat 1871.912 kb on - strandat 1871.912 kb on - strandat 1871.912 kb on - strandat 1871.945 kb on + strandat 1871.945 kb on + strandat 1871.945 kb on + strandat 1871.945 kb on + strandat 1871.945 kb on + strandat 1871.945 kb on + strandat 1871.945 kb on + strandat 1871.945 kb on + strandat 1871.946 kb on - strandat 1871.946 kb on - strandat 1871.946 kb on - strandat 1871.946 kb on - strandat 1871.946 kb on - strandat 1871.972 kb on + strandat 1871.972 kb on + strandat 1871.972 kb on + strandat 1871.973 kb on - strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.991 kb on + strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1871.992 kb on - strandat 1872.001 kb on + strandat 1872.001 kb on + strandat 1872.001 kb on + strandat 1872.001 kb on + strandat 1872.001 kb on + strandat 1872.002 kb on - strandat 1872.002 kb on - strandat 1872.002 kb on - strandat 1872.002 kb on - strandat 1872.002 kb on - strandat 1872.002 kb on - strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.006 kb on + strandat 1872.007 kb on - strandat 1872.007 kb on - strandat 1872.007 kb on - strandat 1872.007 kb on - strandat 1872.007 kb on - strandat 1872.007 kb on - strandat 1872.007 kb on - strandat 1872.041 kb on + strandat 1872.042 kb on - strandat 1872.047 kb on + strandat 1872.050 kb on + strandat 1872.051 kb on - strandat 1872.051 kb on - strandat 1872.091 kb on + strandat 1872.092 kb on - strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.104 kb on + strandat 1872.105 kb on - strandat 1872.105 kb on - strandat 1872.105 kb on - strandat 1872.105 kb on - strandat 1872.105 kb on - strandat 1872.105 kb on - strandat 1872.109 kb on + strandat 1872.109 kb on + strandat 1872.109 kb on + strandat 1872.109 kb on + strandat 1872.109 kb on + strandat 1872.110 kb on - strandat 1872.110 kb on - strandat 1872.110 kb on - strandat 1872.110 kb on - strandat 1872.110 kb on - strandat 1872.110 kb on - strandat 1872.110 kb on - strandat 1872.112 kb on + strandat 1872.112 kb on + strandat 1872.112 kb on + strandat 1872.113 kb on - strandat 1872.113 kb on - strandat 1872.113 kb on - strandat 1872.160 kb on + strandat 1872.160 kb on + strandat 1872.160 kb on + strandat 1872.161 kb on - strandat 1872.161 kb on - strandat 1872.164 kb on + strandat 1872.164 kb on + strandat 1872.165 kb on - strandat 1872.165 kb on - strandat 1872.165 kb on - strandat 1872.279 kb on + strandat 1872.280 kb on - strandat 1872.332 kb on + strandat 1872.332 kb on + strandat 1872.332 kb on + strandat 1872.333 kb on - strandat 1872.466 kb on + strandat 1872.466 kb on + strandat 1872.467 kb on - strandat 1872.494 kb on - strandat 1872.511 kb on - strandat 1872.663 kb on + strandat 1872.677 kb on - strandat 1872.777 kb on + strandat 1872.781 kb on + strandat 1872.856 kb on - strandat 1872.923 kb on + strand, within OH686_09175at 1872.926 kb on + strand, within OH686_09175at 1872.927 kb on - strand, within OH686_09175at 1872.950 kb on + strand, within OH686_09175at 1872.950 kb on + strand, within OH686_09175at 1872.950 kb on + strand, within OH686_09175at 1872.951 kb on - strand, within OH686_09175at 1872.951 kb on - strand, within OH686_09175at 1872.951 kb on - strand, within OH686_09175at 1873.006 kb on + strand, within OH686_09175at 1873.070 kb on + strand, within OH686_09175at 1873.070 kb on + strand, within OH686_09175at 1873.070 kb on + strand, within OH686_09175at 1873.070 kb on + strand, within OH686_09175at 1873.071 kb on - strand, within OH686_09175at 1873.100 kb on + strand, within OH686_09175at 1873.101 kb on - strand, within OH686_09175at 1873.143 kb on + strand, within OH686_09175at 1873.143 kb on + strand, within OH686_09175at 1873.144 kb on - strand, within OH686_09175at 1873.144 kb on - strand, within OH686_09175at 1873.147 kb on + strand, within OH686_09175at 1873.148 kb on - strand, within OH686_09175at 1873.148 kb on - strand, within OH686_09175at 1873.148 kb on - strand, within OH686_09175at 1873.172 kb on - strand, within OH686_09175at 1873.210 kb on - strand, within OH686_09175at 1873.220 kb on - strand, within OH686_09175at 1873.260 kb on + strand, within OH686_09175at 1873.312 kb on + strand, within OH686_09175at 1873.445 kb on + strand, within OH686_09175at 1873.450 kb on - strand, within OH686_09175at 1873.455 kb on - strand, within OH686_09175at 1873.550 kb on + strand, within OH686_09175at 1873.702 kb on + strand, within OH686_09175at 1873.702 kb on + strand, within OH686_09175at 1873.703 kb on - strand, within OH686_09175at 1873.703 kb on - strand, within OH686_09175at 1873.737 kb on + strandat 1873.771 kb on + strandat 1873.771 kb on + strandat 1873.771 kb on + strandat 1873.776 kb on - strandat 1873.804 kb on + strandat 1873.804 kb on + strandat 1873.804 kb on + strandat 1873.805 kb on - strandat 1873.805 kb on - strandat 1873.805 kb on - strandat 1873.805 kb on - strandat 1873.805 kb on - strandat 1873.805 kb on - strandat 1873.805 kb on - strandat 1873.805 kb on - strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.810 kb on + strandat 1873.811 kb on - strandat 1873.811 kb on - strandat 1873.811 kb on - strandat 1873.811 kb on - strandat 1873.811 kb on - strandat 1873.811 kb on - strandat 1873.833 kb on + strandat 1873.895 kb on - strandat 1873.917 kb on + strandat 1873.972 kb on + strandat 1873.973 kb on - strandat 1873.973 kb on - strandat 1873.983 kb on + strandat 1873.983 kb on + strandat 1873.984 kb on - strandat 1873.996 kb on + strandat 1873.996 kb on + strandat 1874.053 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.108 kb on + strandat 1874.109 kb on - strandat 1874.109 kb on - strandat 1874.109 kb on - strandat 1874.109 kb on - strandat 1874.109 kb on - strandat 1874.109 kb on - strandat 1874.109 kb on - strandat 1874.109 kb on - strandat 1874.109 kb on - strandat 1874.645 kb on + strand, within OH686_09180at 1874.646 kb on - strand, within OH686_09180at 1874.795 kb on + strand, within OH686_09180at 1874.795 kb on + strand, within OH686_09180at 1874.796 kb on - strand, within OH686_09180at 1874.796 kb on - strand, within OH686_09180

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,871,832 - -0.1
1,871,853 + +0.4
1,871,853 + +0.0
1,871,853 + -0.2
1,871,853 + +0.3
1,871,853 + +0.7
1,871,853 + +0.7
1,871,853 + -0.3
1,871,853 + -0.4
1,871,853 + -0.5
1,871,853 + +0.2
1,871,853 + -0.4
1,871,854 - +0.0
1,871,854 - -1.4
1,871,854 - +0.2
1,871,854 - -0.3
1,871,854 - +0.6
1,871,854 - +0.3
1,871,854 - +0.5
1,871,854 - +0.3
1,871,866 + +0.4
1,871,866 + +0.7
1,871,866 + -0.3
1,871,866 + +0.1
1,871,866 + -0.1
1,871,867 - -0.1
1,871,867 - +0.4
1,871,867 - -0.2
1,871,899 + +0.3
1,871,899 + +0.1
1,871,899 + -0.2
1,871,899 + +0.6
1,871,900 - -0.1
1,871,911 + -0.1
1,871,912 - +1.6
1,871,912 - -0.2
1,871,912 - -0.1
1,871,912 - +0.2
1,871,912 - +0.0
1,871,912 - +0.7
1,871,945 + -0.0
1,871,945 + -0.4
1,871,945 + +0.9
1,871,945 + -0.8
1,871,945 + -0.6
1,871,945 + -0.3
1,871,945 + +0.4
1,871,945 + +0.1
1,871,946 - +0.5
1,871,946 - +1.7
1,871,946 - +0.6
1,871,946 - +0.4
1,871,946 - -0.0
1,871,972 + -0.6
1,871,972 + -0.3
1,871,972 + +1.1
1,871,973 - +0.1
1,871,991 + +0.5
1,871,991 + -0.5
1,871,991 + -0.1
1,871,991 + +0.1
1,871,991 + +0.1
1,871,991 + -0.6
1,871,991 + -1.6
1,871,991 + +0.3
1,871,991 + +0.1
1,871,991 + +0.5
1,871,991 + +0.1
1,871,991 + -0.0
1,871,991 + -1.0
1,871,992 - -0.3
1,871,992 - -1.0
1,871,992 - -0.2
1,871,992 - +0.8
1,871,992 - -0.6
1,871,992 - +1.1
1,871,992 - +0.2
1,871,992 - +0.7
1,871,992 - +0.6
1,871,992 - +0.1
1,871,992 - +0.3
1,871,992 - +0.2
1,871,992 - +0.3
1,871,992 - -0.9
1,871,992 - -0.1
1,871,992 - -0.1
1,872,001 + +0.4
1,872,001 + -0.3
1,872,001 + +0.8
1,872,001 + +0.3
1,872,001 + +0.0
1,872,002 - -0.8
1,872,002 - -1.6
1,872,002 - +0.0
1,872,002 - +0.8
1,872,002 - -1.9
1,872,002 - +0.2
1,872,006 + -0.4
1,872,006 + +0.0
1,872,006 + -0.3
1,872,006 + -0.2
1,872,006 + -0.1
1,872,006 + -0.8
1,872,006 + +0.1
1,872,006 + +0.4
1,872,006 + +1.0
1,872,006 + +0.4
1,872,006 + +0.1
1,872,007 - +0.6
1,872,007 - +0.4
1,872,007 - -0.7
1,872,007 - -0.3
1,872,007 - +0.0
1,872,007 - -0.0
1,872,007 - -0.5
1,872,041 + -0.2
1,872,042 - -0.0
1,872,047 + -0.6
1,872,050 + +0.7
1,872,051 - -0.5
1,872,051 - -0.2
1,872,091 + -0.9
1,872,092 - +0.5
1,872,104 + +0.2
1,872,104 + -0.4
1,872,104 + -0.5
1,872,104 + -0.3
1,872,104 + -0.2
1,872,104 + +0.5
1,872,104 + +0.3
1,872,104 + +0.3
1,872,104 + -0.2
1,872,104 + -0.2
1,872,105 - +0.1
1,872,105 - -0.1
1,872,105 - +0.8
1,872,105 - -0.4
1,872,105 - +0.0
1,872,105 - -0.0
1,872,109 + -0.1
1,872,109 + +0.1
1,872,109 + -0.9
1,872,109 + -0.1
1,872,109 + +0.0
1,872,110 - +0.8
1,872,110 - -0.8
1,872,110 - -0.6
1,872,110 - -0.0
1,872,110 - +0.1
1,872,110 - +0.5
1,872,110 - +0.3
1,872,112 + +0.5
1,872,112 + -0.4
1,872,112 + +0.3
1,872,113 - -2.2
1,872,113 - -0.4
1,872,113 - -1.8
1,872,160 + +0.3
1,872,160 + -0.3
1,872,160 + -0.3
1,872,161 - -0.6
1,872,161 - -0.4
1,872,164 + +0.1
1,872,164 + -0.2
1,872,165 - -0.1
1,872,165 - +0.4
1,872,165 - -1.6
1,872,279 + +0.4
1,872,280 - -0.1
1,872,332 + -0.1
1,872,332 + +0.4
1,872,332 + +0.5
1,872,333 - +0.1
1,872,466 + +0.0
1,872,466 + -0.8
1,872,467 - -0.3
1,872,494 - +0.6
1,872,511 - -0.5
1,872,663 + -0.1
1,872,677 - -0.8
1,872,777 + +0.2
1,872,781 + +1.4
1,872,856 - -0.3
1,872,923 + OH686_09175 0.11 -0.9
1,872,926 + OH686_09175 0.11 +0.1
1,872,927 - OH686_09175 0.11 +0.2
1,872,950 + OH686_09175 0.14 +0.1
1,872,950 + OH686_09175 0.14 +0.4
1,872,950 + OH686_09175 0.14 -0.4
1,872,951 - OH686_09175 0.14 +0.2
1,872,951 - OH686_09175 0.14 -0.0
1,872,951 - OH686_09175 0.14 -0.5
1,873,006 + OH686_09175 0.19 +0.1
1,873,070 + OH686_09175 0.26 +0.2
1,873,070 + OH686_09175 0.26 +0.3
1,873,070 + OH686_09175 0.26 -0.8
1,873,070 + OH686_09175 0.26 +0.1
1,873,071 - OH686_09175 0.26 +0.4
1,873,100 + OH686_09175 0.29 -0.2
1,873,101 - OH686_09175 0.29 -0.3
1,873,143 + OH686_09175 0.33 -0.9
1,873,143 + OH686_09175 0.33 -0.1
1,873,144 - OH686_09175 0.33 +0.1
1,873,144 - OH686_09175 0.33 -1.4
1,873,147 + OH686_09175 0.33 -0.4
1,873,148 - OH686_09175 0.33 +0.5
1,873,148 - OH686_09175 0.33 +0.6
1,873,148 - OH686_09175 0.33 -0.4
1,873,172 - OH686_09175 0.36 -0.4
1,873,210 - OH686_09175 0.39 +0.4
1,873,220 - OH686_09175 0.40 +0.7
1,873,260 + OH686_09175 0.44 -0.0
1,873,312 + OH686_09175 0.50 -0.9
1,873,445 + OH686_09175 0.63 -0.5
1,873,450 - OH686_09175 0.63 -1.7
1,873,455 - OH686_09175 0.64 +0.1
1,873,550 + OH686_09175 0.73 -0.5
1,873,702 + OH686_09175 0.88 +0.2
1,873,702 + OH686_09175 0.88 +0.1
1,873,703 - OH686_09175 0.88 +0.1
1,873,703 - OH686_09175 0.88 -0.8
1,873,737 + +0.2
1,873,771 + +0.1
1,873,771 + +0.2
1,873,771 + -0.4
1,873,776 - +0.2
1,873,804 + -0.1
1,873,804 + -0.2
1,873,804 + +0.4
1,873,805 - +0.8
1,873,805 - -0.1
1,873,805 - +0.4
1,873,805 - +0.2
1,873,805 - -1.2
1,873,805 - +0.6
1,873,805 - +0.2
1,873,805 - -1.7
1,873,810 + -0.4
1,873,810 + +0.7
1,873,810 + +0.2
1,873,810 + -0.1
1,873,810 + -1.4
1,873,810 + -1.6
1,873,810 + -0.1
1,873,810 + -0.3
1,873,810 + -0.3
1,873,810 + -0.2
1,873,810 + +0.4
1,873,811 - +0.6
1,873,811 - -0.0
1,873,811 - -1.3
1,873,811 - +0.9
1,873,811 - -0.3
1,873,811 - -1.4
1,873,833 + +0.3
1,873,895 - +0.3
1,873,917 + -0.4
1,873,972 + +0.2
1,873,973 - +0.1
1,873,973 - -0.8
1,873,983 + -0.4
1,873,983 + +0.2
1,873,984 - +0.9
1,873,996 + +1.2
1,873,996 + +0.7
1,874,053 + +0.6
1,874,108 + +0.4
1,874,108 + +0.5
1,874,108 + +0.7
1,874,108 + +0.2
1,874,108 + +0.8
1,874,108 + +0.4
1,874,108 + +0.4
1,874,108 + +0.4
1,874,108 + +0.8
1,874,108 + -0.0
1,874,108 + +0.3
1,874,108 + +0.7
1,874,108 + +0.3
1,874,109 - +0.2
1,874,109 - +0.5
1,874,109 - +0.4
1,874,109 - +0.3
1,874,109 - +0.2
1,874,109 - +0.3
1,874,109 - +0.4
1,874,109 - +0.5
1,874,109 - +0.1
1,874,645 + OH686_09180 0.26 +0.7
1,874,646 - OH686_09180 0.26 -0.1
1,874,795 + OH686_09180 0.32 +0.3
1,874,795 + OH686_09180 0.32 -0.3
1,874,796 - OH686_09180 0.32 +0.3
1,874,796 - OH686_09180 0.32 -0.1

Or see this region's nucleotide sequence