Strain Fitness in Pseudomonas sp. S08-1 around OH686_04295

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_04285 and OH686_04290 overlap by 4 nucleotidesOH686_04290 and OH686_04295 are separated by 1 nucleotidesOH686_04295 and OH686_04300 are separated by 83 nucleotides OH686_04285: OH686_04285 - Rhomboid protease GlpG , at 889,006 to 889,866 _04285 OH686_04290: OH686_04290 - ase-related protein, at 889,863 to 890,837 _04290 OH686_04295: OH686_04295 - NAD kinase , at 890,839 to 891,726 _04295 OH686_04300: OH686_04300 - hypothetical protein, at 891,810 to 892,739 _04300 Position (kb) 890 891 892Strain fitness (log2 ratio) -2 -1 0 1at 889.887 kb on + strandat 889.888 kb on - strandat 889.888 kb on - strandat 889.888 kb on - strandat 889.888 kb on - strandat 889.943 kb on - strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.960 kb on + strandat 889.961 kb on - strand, within OH686_04290at 889.961 kb on - strand, within OH686_04290at 889.975 kb on + strand, within OH686_04290at 889.975 kb on + strand, within OH686_04290at 889.975 kb on + strand, within OH686_04290at 889.975 kb on + strand, within OH686_04290at 889.976 kb on - strand, within OH686_04290at 889.976 kb on - strand, within OH686_04290at 890.065 kb on + strand, within OH686_04290at 890.065 kb on + strand, within OH686_04290at 890.066 kb on - strand, within OH686_04290at 890.142 kb on + strand, within OH686_04290at 890.142 kb on + strand, within OH686_04290at 890.142 kb on + strand, within OH686_04290at 890.155 kb on + strand, within OH686_04290at 890.155 kb on + strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.156 kb on - strand, within OH686_04290at 890.194 kb on + strand, within OH686_04290at 890.194 kb on + strand, within OH686_04290at 890.194 kb on + strand, within OH686_04290at 890.194 kb on + strand, within OH686_04290at 890.195 kb on - strand, within OH686_04290at 890.195 kb on - strand, within OH686_04290at 890.195 kb on - strand, within OH686_04290at 890.195 kb on - strand, within OH686_04290at 890.572 kb on + strand, within OH686_04290at 890.572 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.590 kb on + strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 890.591 kb on - strand, within OH686_04290at 891.760 kb on - strandat 891.760 kb on - strandat 891.798 kb on + strandat 892.050 kb on + strand, within OH686_04300at 892.050 kb on + strand, within OH686_04300at 892.051 kb on - strand, within OH686_04300at 892.053 kb on + strand, within OH686_04300at 892.053 kb on + strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.054 kb on - strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.139 kb on + strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.140 kb on - strand, within OH686_04300at 892.212 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.404 kb on + strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.405 kb on - strand, within OH686_04300at 892.413 kb on + strand, within OH686_04300at 892.413 kb on + strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.414 kb on - strand, within OH686_04300at 892.539 kb on - strand, within OH686_04300

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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889,887 + +0.1
889,888 - +0.1
889,888 - -0.2
889,888 - -0.9
889,888 - -0.4
889,943 - -1.3
889,960 + -0.7
889,960 + -0.6
889,960 + -0.8
889,960 + +0.5
889,960 + -1.4
889,960 + -1.3
889,960 + +0.8
889,960 + -0.3
889,961 - OH686_04290 0.10 +0.4
889,961 - OH686_04290 0.10 -0.1
889,975 + OH686_04290 0.11 +0.1
889,975 + OH686_04290 0.11 -0.6
889,975 + OH686_04290 0.11 +0.1
889,975 + OH686_04290 0.11 +0.0
889,976 - OH686_04290 0.12 -0.6
889,976 - OH686_04290 0.12 +0.6
890,065 + OH686_04290 0.21 -0.2
890,065 + OH686_04290 0.21 -0.8
890,066 - OH686_04290 0.21 -0.0
890,142 + OH686_04290 0.29 +0.4
890,142 + OH686_04290 0.29 +0.1
890,142 + OH686_04290 0.29 -0.0
890,155 + OH686_04290 0.30 -0.1
890,155 + OH686_04290 0.30 +0.2
890,156 - OH686_04290 0.30 +0.2
890,156 - OH686_04290 0.30 +0.2
890,156 - OH686_04290 0.30 -0.3
890,156 - OH686_04290 0.30 +0.0
890,156 - OH686_04290 0.30 -0.4
890,156 - OH686_04290 0.30 +0.7
890,156 - OH686_04290 0.30 -1.2
890,194 + OH686_04290 0.34 -0.3
890,194 + OH686_04290 0.34 -0.7
890,194 + OH686_04290 0.34 +0.2
890,194 + OH686_04290 0.34 -0.3
890,195 - OH686_04290 0.34 -0.1
890,195 - OH686_04290 0.34 -0.3
890,195 - OH686_04290 0.34 -0.4
890,195 - OH686_04290 0.34 -0.2
890,572 + OH686_04290 0.73 -0.2
890,572 + OH686_04290 0.73 +0.6
890,590 + OH686_04290 0.75 -0.6
890,590 + OH686_04290 0.75 -0.0
890,590 + OH686_04290 0.75 -0.5
890,590 + OH686_04290 0.75 -0.1
890,590 + OH686_04290 0.75 -0.4
890,590 + OH686_04290 0.75 -0.4
890,591 - OH686_04290 0.75 -0.9
890,591 - OH686_04290 0.75 -0.5
890,591 - OH686_04290 0.75 +0.3
890,591 - OH686_04290 0.75 -0.0
890,591 - OH686_04290 0.75 -0.5
891,760 - -0.9
891,760 - +0.2
891,798 + -0.0
892,050 + OH686_04300 0.26 +0.1
892,050 + OH686_04300 0.26 -0.3
892,051 - OH686_04300 0.26 +0.7
892,053 + OH686_04300 0.26 +0.7
892,053 + OH686_04300 0.26 +1.1
892,054 - OH686_04300 0.26 +0.3
892,054 - OH686_04300 0.26 -1.2
892,054 - OH686_04300 0.26 -2.0
892,139 + OH686_04300 0.35 +0.1
892,139 + OH686_04300 0.35 +0.3
892,139 + OH686_04300 0.35 -0.2
892,140 - OH686_04300 0.35 +0.1
892,140 - OH686_04300 0.35 -0.5
892,140 - OH686_04300 0.35 +0.4
892,212 + OH686_04300 0.43 -0.6
892,404 + OH686_04300 0.64 +0.2
892,404 + OH686_04300 0.64 -0.1
892,404 + OH686_04300 0.64 +0.2
892,405 - OH686_04300 0.64 -1.0
892,405 - OH686_04300 0.64 +0.6
892,405 - OH686_04300 0.64 -0.4
892,413 + OH686_04300 0.65 -0.3
892,413 + OH686_04300 0.65 -0.7
892,414 - OH686_04300 0.65 -0.8
892,414 - OH686_04300 0.65 +0.0
892,414 - OH686_04300 0.65 +0.2
892,414 - OH686_04300 0.65 +0.3
892,539 - OH686_04300 0.78 -1.1

Or see this region's nucleotide sequence