Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4453 and EX28DRAFT_4454 are separated by 241 nucleotides EX28DRAFT_4454 and EX28DRAFT_4455 are separated by 13 nucleotides
EX28DRAFT_4453: EX28DRAFT_4453 - transcription termination factor Rho, at 19,269 to 20,528
_4453
EX28DRAFT_4454: EX28DRAFT_4454 - undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase, at 20,770 to 21,873
_4454
EX28DRAFT_4455: EX28DRAFT_4455 - Chain length determinant protein, at 21,887 to 22,933
_4455
Position (kb) 20
21
22 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 20.526 kb on + strand at 20.585 kb on - strand at 20.586 kb on + strand at 20.586 kb on + strand at 20.587 kb on - strand at 20.587 kb on - strand at 20.587 kb on - strand at 20.587 kb on - strand at 20.587 kb on - strand at 20.592 kb on - strand at 20.594 kb on + strand at 20.595 kb on - strand at 20.595 kb on - strand at 20.637 kb on + strand at 20.638 kb on - strand at 20.659 kb on - strand at 20.674 kb on - strand at 20.703 kb on + strand at 20.706 kb on - strand at 20.706 kb on - strand at 20.732 kb on + strand at 20.734 kb on + strand at 20.735 kb on - strand at 20.735 kb on - strand at 20.735 kb on - strand at 20.735 kb on - strand at 20.746 kb on + strand at 20.777 kb on + strand at 20.777 kb on + strand at 20.778 kb on - strand at 20.778 kb on - strand at 20.778 kb on - strand at 20.784 kb on + strand at 20.806 kb on - strand at 20.817 kb on + strand at 20.844 kb on + strand at 20.845 kb on - strand at 20.905 kb on - strand, within EX28DRAFT_4454 at 20.974 kb on + strand, within EX28DRAFT_4454 at 20.974 kb on + strand, within EX28DRAFT_4454 at 20.975 kb on - strand, within EX28DRAFT_4454 at 20.975 kb on - strand, within EX28DRAFT_4454 at 20.976 kb on + strand, within EX28DRAFT_4454 at 20.995 kb on + strand, within EX28DRAFT_4454 at 21.051 kb on + strand, within EX28DRAFT_4454 at 21.051 kb on + strand, within EX28DRAFT_4454 at 21.051 kb on + strand, within EX28DRAFT_4454 at 21.052 kb on - strand, within EX28DRAFT_4454 at 21.089 kb on + strand, within EX28DRAFT_4454 at 21.089 kb on + strand, within EX28DRAFT_4454 at 21.090 kb on - strand, within EX28DRAFT_4454 at 21.090 kb on - strand, within EX28DRAFT_4454 at 21.090 kb on - strand, within EX28DRAFT_4454 at 21.093 kb on + strand, within EX28DRAFT_4454 at 21.093 kb on + strand, within EX28DRAFT_4454 at 21.129 kb on + strand, within EX28DRAFT_4454 at 21.217 kb on - strand, within EX28DRAFT_4454 at 21.300 kb on - strand, within EX28DRAFT_4454 at 21.316 kb on + strand, within EX28DRAFT_4454 at 21.316 kb on + strand, within EX28DRAFT_4454 at 21.317 kb on - strand, within EX28DRAFT_4454 at 21.318 kb on + strand, within EX28DRAFT_4454 at 21.318 kb on + strand, within EX28DRAFT_4454 at 21.319 kb on - strand, within EX28DRAFT_4454 at 21.319 kb on - strand, within EX28DRAFT_4454 at 21.319 kb on - strand, within EX28DRAFT_4454 at 21.327 kb on + strand, within EX28DRAFT_4454 at 21.327 kb on + strand, within EX28DRAFT_4454 at 21.327 kb on + strand, within EX28DRAFT_4454 at 21.328 kb on - strand, within EX28DRAFT_4454 at 21.364 kb on + strand, within EX28DRAFT_4454 at 21.364 kb on + strand, within EX28DRAFT_4454 at 21.364 kb on + strand, within EX28DRAFT_4454 at 21.366 kb on + strand, within EX28DRAFT_4454 at 21.403 kb on - strand, within EX28DRAFT_4454 at 21.403 kb on - strand, within EX28DRAFT_4454 at 21.408 kb on - strand, within EX28DRAFT_4454 at 21.408 kb on - strand, within EX28DRAFT_4454 at 21.408 kb on - strand, within EX28DRAFT_4454 at 21.408 kb on - strand, within EX28DRAFT_4454 at 21.435 kb on + strand, within EX28DRAFT_4454 at 21.444 kb on + strand, within EX28DRAFT_4454 at 21.444 kb on + strand, within EX28DRAFT_4454 at 21.447 kb on + strand, within EX28DRAFT_4454 at 21.448 kb on - strand, within EX28DRAFT_4454 at 21.485 kb on + strand, within EX28DRAFT_4454 at 21.485 kb on + strand, within EX28DRAFT_4454 at 21.485 kb on + strand, within EX28DRAFT_4454 at 21.485 kb on + strand, within EX28DRAFT_4454 at 21.486 kb on - strand, within EX28DRAFT_4454 at 21.553 kb on - strand, within EX28DRAFT_4454 at 21.553 kb on - strand, within EX28DRAFT_4454 at 21.557 kb on - strand, within EX28DRAFT_4454 at 21.660 kb on + strand, within EX28DRAFT_4454 at 21.660 kb on + strand, within EX28DRAFT_4454 at 21.663 kb on + strand, within EX28DRAFT_4454 at 21.679 kb on - strand, within EX28DRAFT_4454 at 21.711 kb on + strand, within EX28DRAFT_4454 at 21.711 kb on + strand, within EX28DRAFT_4454 at 21.735 kb on + strand, within EX28DRAFT_4454 at 21.801 kb on - strand at 21.820 kb on - strand at 21.822 kb on + strand at 21.840 kb on + strand at 21.840 kb on + strand at 21.841 kb on - strand at 21.841 kb on - strand at 21.855 kb on + strand at 21.855 kb on + strand at 21.855 kb on + strand at 21.855 kb on + strand at 21.856 kb on - strand at 21.863 kb on + strand at 21.863 kb on + strand at 21.863 kb on + strand at 21.863 kb on + strand at 21.864 kb on - strand at 21.867 kb on + strand at 21.867 kb on + strand at 21.867 kb on + strand at 21.868 kb on - strand at 21.883 kb on + strand at 21.883 kb on + strand at 21.883 kb on + strand at 22.025 kb on + strand, within EX28DRAFT_4455 at 22.025 kb on + strand, within EX28DRAFT_4455 at 22.025 kb on + strand, within EX28DRAFT_4455 at 22.027 kb on + strand, within EX28DRAFT_4455 at 22.027 kb on + strand, within EX28DRAFT_4455 at 22.028 kb on - strand, within EX28DRAFT_4455 at 22.101 kb on - strand, within EX28DRAFT_4455 at 22.104 kb on - strand, within EX28DRAFT_4455 at 22.256 kb on + strand, within EX28DRAFT_4455 at 22.257 kb on - strand, within EX28DRAFT_4455 at 22.257 kb on - strand, within EX28DRAFT_4455 at 22.276 kb on + strand, within EX28DRAFT_4455 at 22.276 kb on + strand, within EX28DRAFT_4455 at 22.418 kb on + strand, within EX28DRAFT_4455 at 22.418 kb on + strand, within EX28DRAFT_4455 at 22.456 kb on + strand, within EX28DRAFT_4455 at 22.600 kb on + strand, within EX28DRAFT_4455 at 22.730 kb on + strand, within EX28DRAFT_4455 at 22.762 kb on + strand, within EX28DRAFT_4455 at 22.799 kb on + strand, within EX28DRAFT_4455 at 22.800 kb on - strand, within EX28DRAFT_4455 at 22.800 kb on - strand, within EX28DRAFT_4455
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 20,526 + -0.4 20,585 - +0.5 20,586 + -0.2 20,586 + +1.0 20,587 - +0.0 20,587 - +1.5 20,587 - +0.2 20,587 - -3.0 20,587 - +1.3 20,592 - -1.2 20,594 + +0.5 20,595 - +0.6 20,595 - -0.1 20,637 + -0.6 20,638 - +1.5 20,659 - -1.6 20,674 - -0.8 20,703 + +0.0 20,706 - +0.0 20,706 - -0.5 20,732 + +0.8 20,734 + -0.1 20,735 - -0.7 20,735 - -1.2 20,735 - -0.9 20,735 - -1.2 20,746 + +0.3 20,777 + -3.2 20,777 + -1.9 20,778 - -0.7 20,778 - -1.0 20,778 - -0.8 20,784 + -1.0 20,806 - -2.4 20,817 + -1.6 20,844 + -3.2 20,845 - -1.3 20,905 - EX28DRAFT_4454 0.12 -1.1 20,974 + EX28DRAFT_4454 0.18 -1.4 20,974 + EX28DRAFT_4454 0.18 +0.2 20,975 - EX28DRAFT_4454 0.19 +0.1 20,975 - EX28DRAFT_4454 0.19 -0.4 20,976 + EX28DRAFT_4454 0.19 -1.8 20,995 + EX28DRAFT_4454 0.20 -1.9 21,051 + EX28DRAFT_4454 0.25 -1.2 21,051 + EX28DRAFT_4454 0.25 -1.0 21,051 + EX28DRAFT_4454 0.25 -0.4 21,052 - EX28DRAFT_4454 0.26 -1.3 21,089 + EX28DRAFT_4454 0.29 -1.3 21,089 + EX28DRAFT_4454 0.29 -0.1 21,090 - EX28DRAFT_4454 0.29 -2.6 21,090 - EX28DRAFT_4454 0.29 -2.5 21,090 - EX28DRAFT_4454 0.29 -1.0 21,093 + EX28DRAFT_4454 0.29 -1.2 21,093 + EX28DRAFT_4454 0.29 -1.7 21,129 + EX28DRAFT_4454 0.33 -0.3 21,217 - EX28DRAFT_4454 0.40 -2.4 21,300 - EX28DRAFT_4454 0.48 -2.0 21,316 + EX28DRAFT_4454 0.49 -1.9 21,316 + EX28DRAFT_4454 0.49 -1.4 21,317 - EX28DRAFT_4454 0.50 -1.9 21,318 + EX28DRAFT_4454 0.50 -0.2 21,318 + EX28DRAFT_4454 0.50 -1.7 21,319 - EX28DRAFT_4454 0.50 -1.5 21,319 - EX28DRAFT_4454 0.50 -0.7 21,319 - EX28DRAFT_4454 0.50 -1.0 21,327 + EX28DRAFT_4454 0.50 -2.2 21,327 + EX28DRAFT_4454 0.50 -0.7 21,327 + EX28DRAFT_4454 0.50 -1.5 21,328 - EX28DRAFT_4454 0.51 -1.2 21,364 + EX28DRAFT_4454 0.54 -0.9 21,364 + EX28DRAFT_4454 0.54 -0.6 21,364 + EX28DRAFT_4454 0.54 -1.8 21,366 + EX28DRAFT_4454 0.54 -1.4 21,403 - EX28DRAFT_4454 0.57 -2.0 21,403 - EX28DRAFT_4454 0.57 -1.4 21,408 - EX28DRAFT_4454 0.58 -0.1 21,408 - EX28DRAFT_4454 0.58 -3.0 21,408 - EX28DRAFT_4454 0.58 -1.2 21,408 - EX28DRAFT_4454 0.58 -1.6 21,435 + EX28DRAFT_4454 0.60 -1.2 21,444 + EX28DRAFT_4454 0.61 -0.8 21,444 + EX28DRAFT_4454 0.61 -0.8 21,447 + EX28DRAFT_4454 0.61 -3.9 21,448 - EX28DRAFT_4454 0.61 -0.6 21,485 + EX28DRAFT_4454 0.65 -1.1 21,485 + EX28DRAFT_4454 0.65 -3.0 21,485 + EX28DRAFT_4454 0.65 -1.8 21,485 + EX28DRAFT_4454 0.65 -1.8 21,486 - EX28DRAFT_4454 0.65 -2.3 21,553 - EX28DRAFT_4454 0.71 -0.6 21,553 - EX28DRAFT_4454 0.71 -2.2 21,557 - EX28DRAFT_4454 0.71 -0.3 21,660 + EX28DRAFT_4454 0.81 -1.7 21,660 + EX28DRAFT_4454 0.81 -2.1 21,663 + EX28DRAFT_4454 0.81 -1.7 21,679 - EX28DRAFT_4454 0.82 -1.5 21,711 + EX28DRAFT_4454 0.85 -2.0 21,711 + EX28DRAFT_4454 0.85 -0.6 21,735 + EX28DRAFT_4454 0.87 -0.6 21,801 - -1.5 21,820 - -2.4 21,822 + -0.9 21,840 + -0.1 21,840 + +0.5 21,841 - -1.4 21,841 - -1.7 21,855 + -0.5 21,855 + -0.7 21,855 + -0.5 21,855 + +0.2 21,856 - -1.7 21,863 + -0.8 21,863 + -0.2 21,863 + +2.3 21,863 + +0.3 21,864 - -1.7 21,867 + -0.1 21,867 + -0.2 21,867 + +0.4 21,868 - -1.9 21,883 + +1.5 21,883 + -0.4 21,883 + +1.2 22,025 + EX28DRAFT_4455 0.13 +1.8 22,025 + EX28DRAFT_4455 0.13 +0.1 22,025 + EX28DRAFT_4455 0.13 +0.3 22,027 + EX28DRAFT_4455 0.13 +0.3 22,027 + EX28DRAFT_4455 0.13 +2.3 22,028 - EX28DRAFT_4455 0.13 -2.9 22,101 - EX28DRAFT_4455 0.20 -2.3 22,104 - EX28DRAFT_4455 0.21 -1.5 22,256 + EX28DRAFT_4455 0.35 +0.8 22,257 - EX28DRAFT_4455 0.35 -2.3 22,257 - EX28DRAFT_4455 0.35 -0.7 22,276 + EX28DRAFT_4455 0.37 +0.6 22,276 + EX28DRAFT_4455 0.37 +0.7 22,418 + EX28DRAFT_4455 0.51 +0.6 22,418 + EX28DRAFT_4455 0.51 +0.2 22,456 + EX28DRAFT_4455 0.54 +0.6 22,600 + EX28DRAFT_4455 0.68 +0.6 22,730 + EX28DRAFT_4455 0.81 +0.8 22,762 + EX28DRAFT_4455 0.84 -1.0 22,799 + EX28DRAFT_4455 0.87 -0.0 22,800 - EX28DRAFT_4455 0.87 -0.8 22,800 - EX28DRAFT_4455 0.87 -1.2
Or see this region's nucleotide sequence