Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4406 and EX28DRAFT_4407 are separated by 198 nucleotides EX28DRAFT_4407 and EX28DRAFT_4408 are separated by 119 nucleotides
EX28DRAFT_4406: EX28DRAFT_4406 - cell division protein FtsN, at 68,172 to 69,065
_4406
EX28DRAFT_4407: EX28DRAFT_4407 - Transcriptional regulators, at 69,264 to 70,289
_4407
EX28DRAFT_4408: EX28DRAFT_4408 - replication restart DNA helicase PriA, at 70,409 to 72,604
_4408
Position (kb) 69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 68.300 kb on + strand, within EX28DRAFT_4406 at 68.300 kb on + strand, within EX28DRAFT_4406 at 68.301 kb on - strand, within EX28DRAFT_4406 at 68.301 kb on - strand, within EX28DRAFT_4406 at 68.486 kb on + strand, within EX28DRAFT_4406 at 68.600 kb on - strand, within EX28DRAFT_4406 at 69.185 kb on - strand at 69.189 kb on - strand at 69.213 kb on - strand at 69.216 kb on + strand at 69.217 kb on - strand at 69.261 kb on - strand at 69.261 kb on - strand at 69.265 kb on + strand at 69.443 kb on + strand, within EX28DRAFT_4407 at 69.443 kb on + strand, within EX28DRAFT_4407 at 69.444 kb on - strand, within EX28DRAFT_4407 at 69.507 kb on + strand, within EX28DRAFT_4407 at 69.608 kb on + strand, within EX28DRAFT_4407 at 69.608 kb on + strand, within EX28DRAFT_4407 at 69.608 kb on + strand, within EX28DRAFT_4407 at 69.628 kb on + strand, within EX28DRAFT_4407 at 69.628 kb on + strand, within EX28DRAFT_4407 at 69.737 kb on + strand, within EX28DRAFT_4407 at 69.738 kb on - strand, within EX28DRAFT_4407 at 69.738 kb on - strand, within EX28DRAFT_4407 at 70.132 kb on + strand, within EX28DRAFT_4407 at 70.200 kb on + strand at 70.201 kb on - strand at 70.345 kb on + strand at 70.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 68,300 + EX28DRAFT_4406 0.14 +2.2 68,300 + EX28DRAFT_4406 0.14 +3.1 68,301 - EX28DRAFT_4406 0.14 +1.3 68,301 - EX28DRAFT_4406 0.14 +1.3 68,486 + EX28DRAFT_4406 0.35 -0.9 68,600 - EX28DRAFT_4406 0.48 +0.0 69,185 - +0.3 69,189 - +0.2 69,213 - -0.1 69,216 + +0.4 69,217 - +0.0 69,261 - +3.5 69,261 - +0.5 69,265 + +0.2 69,443 + EX28DRAFT_4407 0.17 -1.4 69,443 + EX28DRAFT_4407 0.17 -0.7 69,444 - EX28DRAFT_4407 0.18 -1.6 69,507 + EX28DRAFT_4407 0.24 -0.4 69,608 + EX28DRAFT_4407 0.34 +0.3 69,608 + EX28DRAFT_4407 0.34 -1.5 69,608 + EX28DRAFT_4407 0.34 -1.5 69,628 + EX28DRAFT_4407 0.35 -3.3 69,628 + EX28DRAFT_4407 0.35 -1.9 69,737 + EX28DRAFT_4407 0.46 -1.5 69,738 - EX28DRAFT_4407 0.46 -1.2 69,738 - EX28DRAFT_4407 0.46 -2.0 70,132 + EX28DRAFT_4407 0.85 -2.6 70,200 + -1.4 70,201 - -1.2 70,345 + -0.9 70,345 + -0.9
Or see this region's nucleotide sequence