Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4235 and EX28DRAFT_4236 overlap by 8 nucleotides EX28DRAFT_4236 and EX28DRAFT_4237 are separated by 102 nucleotides EX28DRAFT_4237 and EX28DRAFT_4238 are separated by 76 nucleotides
EX28DRAFT_4235: EX28DRAFT_4235 - Putative effector of murein hydrolase, at 41,791 to 42,480
_4235
EX28DRAFT_4236: EX28DRAFT_4236 - Putative effector of murein hydrolase LrgA, at 42,473 to 42,883
_4236
EX28DRAFT_4237: EX28DRAFT_4237 - Transcriptional regulator, at 42,986 to 43,873
_4237
EX28DRAFT_4238: EX28DRAFT_4238 - Na+/H+ antiporter, bacterial form, at 43,950 to 45,596
_4238
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 42.225 kb on + strand, within EX28DRAFT_4235 at 42.311 kb on + strand, within EX28DRAFT_4235 at 42.311 kb on + strand, within EX28DRAFT_4235 at 42.328 kb on - strand, within EX28DRAFT_4235 at 42.429 kb on - strand at 42.433 kb on - strand at 42.433 kb on - strand at 42.436 kb on + strand at 42.508 kb on - strand at 42.609 kb on + strand, within EX28DRAFT_4236 at 42.610 kb on - strand, within EX28DRAFT_4236 at 42.716 kb on - strand, within EX28DRAFT_4236 at 42.783 kb on + strand, within EX28DRAFT_4236 at 42.784 kb on - strand, within EX28DRAFT_4236 at 42.918 kb on + strand at 42.919 kb on - strand at 42.920 kb on + strand at 42.920 kb on + strand at 42.921 kb on - strand at 42.921 kb on - strand at 42.952 kb on - strand at 42.966 kb on + strand at 42.966 kb on + strand at 42.969 kb on - strand at 42.993 kb on + strand at 43.040 kb on - strand at 43.565 kb on + strand, within EX28DRAFT_4237 at 43.566 kb on - strand, within EX28DRAFT_4237 at 43.618 kb on + strand, within EX28DRAFT_4237 at 43.715 kb on - strand, within EX28DRAFT_4237 at 43.715 kb on - strand, within EX28DRAFT_4237 at 43.809 kb on - strand at 43.809 kb on - strand at 43.812 kb on + strand at 43.910 kb on + strand at 43.911 kb on - strand at 43.911 kb on - strand at 44.048 kb on - strand at 44.288 kb on + strand, within EX28DRAFT_4238 at 44.330 kb on + strand, within EX28DRAFT_4238 at 44.330 kb on + strand, within EX28DRAFT_4238 at 44.331 kb on - strand, within EX28DRAFT_4238 at 44.331 kb on - strand, within EX28DRAFT_4238 at 44.354 kb on + strand, within EX28DRAFT_4238 at 44.355 kb on - strand, within EX28DRAFT_4238 at 44.355 kb on - strand, within EX28DRAFT_4238 at 44.626 kb on + strand, within EX28DRAFT_4238
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 42,225 + EX28DRAFT_4235 0.63 +1.0 42,311 + EX28DRAFT_4235 0.75 -1.8 42,311 + EX28DRAFT_4235 0.75 -0.4 42,328 - EX28DRAFT_4235 0.78 -0.5 42,429 - -0.7 42,433 - -0.5 42,433 - -0.2 42,436 + +0.8 42,508 - +2.7 42,609 + EX28DRAFT_4236 0.33 -0.9 42,610 - EX28DRAFT_4236 0.33 +0.2 42,716 - EX28DRAFT_4236 0.59 -0.2 42,783 + EX28DRAFT_4236 0.75 +1.0 42,784 - EX28DRAFT_4236 0.76 -1.1 42,918 + -1.6 42,919 - +1.1 42,920 + +4.0 42,920 + +0.3 42,921 - -0.5 42,921 - -0.1 42,952 - -0.4 42,966 + +0.1 42,966 + +2.7 42,969 - -0.0 42,993 + -1.1 43,040 - -0.2 43,565 + EX28DRAFT_4237 0.65 +1.5 43,566 - EX28DRAFT_4237 0.65 -0.7 43,618 + EX28DRAFT_4237 0.71 -1.7 43,715 - EX28DRAFT_4237 0.82 -0.5 43,715 - EX28DRAFT_4237 0.82 -0.4 43,809 - +0.5 43,809 - -0.1 43,812 + +2.0 43,910 + -1.1 43,911 - +0.8 43,911 - -0.3 44,048 - -0.5 44,288 + EX28DRAFT_4238 0.21 -0.8 44,330 + EX28DRAFT_4238 0.23 -0.0 44,330 + EX28DRAFT_4238 0.23 +0.8 44,331 - EX28DRAFT_4238 0.23 -0.9 44,331 - EX28DRAFT_4238 0.23 +0.0 44,354 + EX28DRAFT_4238 0.25 +1.3 44,355 - EX28DRAFT_4238 0.25 -1.7 44,355 - EX28DRAFT_4238 0.25 +0.2 44,626 + EX28DRAFT_4238 0.41 -0.1
Or see this region's nucleotide sequence