Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4128 and EX28DRAFT_4129 are separated by 61 nucleotides EX28DRAFT_4129 and EX28DRAFT_4130 are separated by 36 nucleotides EX28DRAFT_4130 and EX28DRAFT_4131 are separated by 111 nucleotides
EX28DRAFT_4128: EX28DRAFT_4128 - IscR-regulated protein YhgI, at 108,911 to 109,486
_4128
EX28DRAFT_4129: EX28DRAFT_4129 - Predicted amidophosphoribosyltransferases, at 109,548 to 110,231
_4129
EX28DRAFT_4130: EX28DRAFT_4130 - pimelyl-[acyl-carrier protein] methyl ester esterase, at 110,268 to 111,041
_4130
EX28DRAFT_4131: EX28DRAFT_4131 - Protein of unknown function (DUF1471), at 111,153 to 111,422
_4131
Position (kb) 109
110
111 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 108.759 kb on + strand at 108.761 kb on + strand at 108.762 kb on - strand at 108.762 kb on - strand at 108.817 kb on + strand at 108.912 kb on + strand at 108.913 kb on - strand at 108.916 kb on - strand at 108.919 kb on - strand at 108.919 kb on - strand at 109.360 kb on - strand, within EX28DRAFT_4128 at 109.478 kb on - strand at 109.487 kb on - strand at 109.556 kb on + strand at 109.572 kb on + strand at 109.573 kb on - strand at 109.573 kb on - strand at 109.573 kb on - strand at 109.770 kb on - strand, within EX28DRAFT_4129 at 109.770 kb on - strand, within EX28DRAFT_4129 at 109.868 kb on - strand, within EX28DRAFT_4129 at 109.870 kb on - strand, within EX28DRAFT_4129 at 110.023 kb on + strand, within EX28DRAFT_4129 at 110.024 kb on - strand, within EX28DRAFT_4129 at 110.024 kb on - strand, within EX28DRAFT_4129 at 110.262 kb on + strand at 110.262 kb on + strand at 110.262 kb on + strand at 110.263 kb on - strand at 110.350 kb on + strand, within EX28DRAFT_4130 at 110.350 kb on + strand, within EX28DRAFT_4130 at 110.351 kb on - strand, within EX28DRAFT_4130 at 110.362 kb on + strand, within EX28DRAFT_4130 at 110.362 kb on + strand, within EX28DRAFT_4130 at 110.362 kb on + strand, within EX28DRAFT_4130 at 110.363 kb on - strand, within EX28DRAFT_4130 at 110.363 kb on - strand, within EX28DRAFT_4130 at 110.363 kb on - strand, within EX28DRAFT_4130 at 110.687 kb on - strand, within EX28DRAFT_4130 at 110.870 kb on + strand, within EX28DRAFT_4130 at 110.874 kb on + strand, within EX28DRAFT_4130 at 110.874 kb on + strand, within EX28DRAFT_4130 at 110.875 kb on - strand, within EX28DRAFT_4130 at 110.875 kb on - strand, within EX28DRAFT_4130 at 110.875 kb on - strand, within EX28DRAFT_4130 at 110.875 kb on - strand, within EX28DRAFT_4130 at 110.981 kb on + strand at 110.981 kb on + strand at 110.982 kb on - strand at 111.085 kb on - strand at 111.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 108,759 + +1.1 108,761 + +0.4 108,762 - -1.7 108,762 - -1.6 108,817 + -1.4 108,912 + +3.5 108,913 - +0.6 108,916 - -2.1 108,919 - +1.2 108,919 - -0.3 109,360 - EX28DRAFT_4128 0.78 -2.4 109,478 - -3.9 109,487 - -2.2 109,556 + +0.6 109,572 + +0.3 109,573 - +1.2 109,573 - +0.2 109,573 - -0.6 109,770 - EX28DRAFT_4129 0.32 -0.0 109,770 - EX28DRAFT_4129 0.32 -0.3 109,868 - EX28DRAFT_4129 0.47 +0.6 109,870 - EX28DRAFT_4129 0.47 +0.8 110,023 + EX28DRAFT_4129 0.69 +0.2 110,024 - EX28DRAFT_4129 0.70 +0.1 110,024 - EX28DRAFT_4129 0.70 +1.4 110,262 + -0.8 110,262 + +0.0 110,262 + +0.8 110,263 - +0.0 110,350 + EX28DRAFT_4130 0.11 -0.0 110,350 + EX28DRAFT_4130 0.11 +2.7 110,351 - EX28DRAFT_4130 0.11 +0.4 110,362 + EX28DRAFT_4130 0.12 +0.1 110,362 + EX28DRAFT_4130 0.12 -0.3 110,362 + EX28DRAFT_4130 0.12 -0.3 110,363 - EX28DRAFT_4130 0.12 +0.2 110,363 - EX28DRAFT_4130 0.12 +0.6 110,363 - EX28DRAFT_4130 0.12 +0.9 110,687 - EX28DRAFT_4130 0.54 -0.1 110,870 + EX28DRAFT_4130 0.78 -0.1 110,874 + EX28DRAFT_4130 0.78 -0.7 110,874 + EX28DRAFT_4130 0.78 -1.2 110,875 - EX28DRAFT_4130 0.78 +0.5 110,875 - EX28DRAFT_4130 0.78 -0.8 110,875 - EX28DRAFT_4130 0.78 -0.3 110,875 - EX28DRAFT_4130 0.78 -1.0 110,981 + +0.7 110,981 + -0.2 110,982 - -1.9 111,085 - +0.2 111,114 + +0.1
Or see this region's nucleotide sequence