Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3949 and EX28DRAFT_3950 are separated by 140 nucleotides EX28DRAFT_3950 and EX28DRAFT_3951 overlap by 8 nucleotides
EX28DRAFT_3949: EX28DRAFT_3949 - phosphoglycerate transporter family protein, at 158,695 to 160,086
_3949
EX28DRAFT_3950: EX28DRAFT_3950 - phosphoglycerate transporter family protein, at 160,227 to 161,546
_3950
EX28DRAFT_3951: EX28DRAFT_3951 - Signal transduction histidine kinase, glucose-6-phosphate specific, at 161,539 to 163,044
_3951
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 159.273 kb on - strand, within EX28DRAFT_3949 at 159.273 kb on - strand, within EX28DRAFT_3949 at 159.326 kb on + strand, within EX28DRAFT_3949 at 159.327 kb on - strand, within EX28DRAFT_3949 at 159.418 kb on - strand, within EX28DRAFT_3949 at 159.672 kb on + strand, within EX28DRAFT_3949 at 159.762 kb on + strand, within EX28DRAFT_3949 at 159.762 kb on + strand, within EX28DRAFT_3949 at 159.763 kb on - strand, within EX28DRAFT_3949 at 159.824 kb on + strand, within EX28DRAFT_3949 at 159.825 kb on - strand, within EX28DRAFT_3949 at 159.843 kb on + strand, within EX28DRAFT_3949 at 159.854 kb on + strand, within EX28DRAFT_3949 at 159.854 kb on + strand, within EX28DRAFT_3949 at 159.854 kb on + strand, within EX28DRAFT_3949 at 159.908 kb on + strand, within EX28DRAFT_3949 at 159.908 kb on + strand, within EX28DRAFT_3949 at 160.109 kb on + strand at 160.388 kb on - strand, within EX28DRAFT_3950 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.729 kb on + strand, within EX28DRAFT_3950 at 160.730 kb on - strand, within EX28DRAFT_3950 at 160.730 kb on - strand, within EX28DRAFT_3950 at 160.768 kb on + strand, within EX28DRAFT_3950 at 160.769 kb on - strand, within EX28DRAFT_3950 at 160.781 kb on - strand, within EX28DRAFT_3950 at 160.805 kb on - strand, within EX28DRAFT_3950 at 160.822 kb on + strand, within EX28DRAFT_3950 at 160.823 kb on - strand, within EX28DRAFT_3950 at 161.014 kb on + strand, within EX28DRAFT_3950 at 161.067 kb on - strand, within EX28DRAFT_3950 at 161.116 kb on + strand, within EX28DRAFT_3950 at 161.269 kb on + strand, within EX28DRAFT_3950 at 161.270 kb on - strand, within EX28DRAFT_3950 at 161.270 kb on - strand, within EX28DRAFT_3950 at 161.323 kb on + strand, within EX28DRAFT_3950 at 161.324 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.333 kb on - strand, within EX28DRAFT_3950 at 161.429 kb on - strand at 161.540 kb on + strand at 161.549 kb on + strand at 161.549 kb on + strand at 161.550 kb on - strand at 161.550 kb on - strand at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.847 kb on + strand, within EX28DRAFT_3951 at 161.928 kb on + strand, within EX28DRAFT_3951 at 161.929 kb on - strand, within EX28DRAFT_3951 at 161.984 kb on + strand, within EX28DRAFT_3951 at 161.985 kb on - strand, within EX28DRAFT_3951 at 162.229 kb on + strand, within EX28DRAFT_3951 at 162.284 kb on - strand, within EX28DRAFT_3951 at 162.372 kb on - strand, within EX28DRAFT_3951
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 159,273 - EX28DRAFT_3949 0.42 +0.6 159,273 - EX28DRAFT_3949 0.42 -0.3 159,326 + EX28DRAFT_3949 0.45 -0.3 159,327 - EX28DRAFT_3949 0.45 -0.5 159,418 - EX28DRAFT_3949 0.52 +0.7 159,672 + EX28DRAFT_3949 0.70 -1.1 159,762 + EX28DRAFT_3949 0.77 +0.8 159,762 + EX28DRAFT_3949 0.77 -0.1 159,763 - EX28DRAFT_3949 0.77 +0.8 159,824 + EX28DRAFT_3949 0.81 +0.1 159,825 - EX28DRAFT_3949 0.81 -0.1 159,843 + EX28DRAFT_3949 0.82 -0.9 159,854 + EX28DRAFT_3949 0.83 +0.5 159,854 + EX28DRAFT_3949 0.83 +0.2 159,854 + EX28DRAFT_3949 0.83 +0.6 159,908 + EX28DRAFT_3949 0.87 -0.7 159,908 + EX28DRAFT_3949 0.87 +1.0 160,109 + +0.4 160,388 - EX28DRAFT_3950 0.12 -0.9 160,729 + EX28DRAFT_3950 0.38 +4.2 160,729 + EX28DRAFT_3950 0.38 +0.2 160,729 + EX28DRAFT_3950 0.38 +1.1 160,730 - EX28DRAFT_3950 0.38 +1.2 160,730 - EX28DRAFT_3950 0.38 +0.9 160,768 + EX28DRAFT_3950 0.41 -0.7 160,769 - EX28DRAFT_3950 0.41 -0.4 160,781 - EX28DRAFT_3950 0.42 +0.7 160,805 - EX28DRAFT_3950 0.44 -0.1 160,822 + EX28DRAFT_3950 0.45 +0.2 160,823 - EX28DRAFT_3950 0.45 +1.9 161,014 + EX28DRAFT_3950 0.60 +2.1 161,067 - EX28DRAFT_3950 0.64 +0.7 161,116 + EX28DRAFT_3950 0.67 -0.1 161,269 + EX28DRAFT_3950 0.79 +1.9 161,270 - EX28DRAFT_3950 0.79 -2.5 161,270 - EX28DRAFT_3950 0.79 -2.0 161,323 + EX28DRAFT_3950 0.83 -0.6 161,324 - EX28DRAFT_3950 0.83 -0.1 161,333 - EX28DRAFT_3950 0.84 +0.1 161,333 - EX28DRAFT_3950 0.84 +1.0 161,333 - EX28DRAFT_3950 0.84 +0.6 161,429 - +0.4 161,540 + -1.1 161,549 + +0.8 161,549 + +0.5 161,550 - +0.1 161,550 - +0.7 161,847 + EX28DRAFT_3951 0.20 +0.2 161,847 + EX28DRAFT_3951 0.20 -0.2 161,847 + EX28DRAFT_3951 0.20 -1.7 161,847 + EX28DRAFT_3951 0.20 +0.1 161,928 + EX28DRAFT_3951 0.26 +0.4 161,929 - EX28DRAFT_3951 0.26 +0.3 161,984 + EX28DRAFT_3951 0.30 -0.1 161,985 - EX28DRAFT_3951 0.30 -0.3 162,229 + EX28DRAFT_3951 0.46 -1.2 162,284 - EX28DRAFT_3951 0.49 +0.1 162,372 - EX28DRAFT_3951 0.55 -0.0
Or see this region's nucleotide sequence