Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3880

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3879 and EX28DRAFT_3880 are separated by 2 nucleotidesEX28DRAFT_3880 and EX28DRAFT_3881 are separated by 11 nucleotides EX28DRAFT_3879: EX28DRAFT_3879 - Glycosyltransferase, at 89,381 to 90,508 _3879 EX28DRAFT_3880: EX28DRAFT_3880 - Glycosyltransferase, at 90,511 to 91,611 _3880 EX28DRAFT_3881: EX28DRAFT_3881 - Glycosyltransferases involved in cell wall biogenesis, at 91,623 to 92,612 _3881 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.675 kb on + strand, within EX28DRAFT_3879at 89.676 kb on - strand, within EX28DRAFT_3879at 89.760 kb on - strand, within EX28DRAFT_3879at 89.805 kb on - strand, within EX28DRAFT_3879at 90.230 kb on + strand, within EX28DRAFT_3879at 90.231 kb on - strand, within EX28DRAFT_3879at 90.521 kb on + strandat 90.528 kb on + strandat 90.528 kb on + strandat 90.529 kb on - strandat 90.529 kb on - strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.588 kb on - strandat 90.590 kb on + strandat 90.590 kb on + strandat 90.590 kb on + strandat 90.614 kb on + strandat 90.614 kb on + strandat 90.615 kb on - strandat 90.615 kb on - strandat 90.687 kb on + strand, within EX28DRAFT_3880at 90.687 kb on + strand, within EX28DRAFT_3880at 90.687 kb on + strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.887 kb on - strand, within EX28DRAFT_3880at 90.921 kb on + strand, within EX28DRAFT_3880at 90.922 kb on - strand, within EX28DRAFT_3880at 90.930 kb on + strand, within EX28DRAFT_3880at 90.931 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.946 kb on + strand, within EX28DRAFT_3880at 91.042 kb on - strand, within EX28DRAFT_3880at 91.108 kb on + strand, within EX28DRAFT_3880at 91.108 kb on + strand, within EX28DRAFT_3880at 91.109 kb on - strand, within EX28DRAFT_3880at 91.113 kb on + strand, within EX28DRAFT_3880at 91.113 kb on + strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.160 kb on + strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.334 kb on + strand, within EX28DRAFT_3880at 91.335 kb on - strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.366 kb on - strand, within EX28DRAFT_3880at 91.386 kb on + strand, within EX28DRAFT_3880at 91.386 kb on + strand, within EX28DRAFT_3880at 91.411 kb on - strand, within EX28DRAFT_3880at 91.411 kb on - strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.476 kb on - strand, within EX28DRAFT_3880at 91.476 kb on - strand, within EX28DRAFT_3880at 91.509 kb on + strandat 91.510 kb on - strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.513 kb on + strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.514 kb on - strandat 91.516 kb on - strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.582 kb on + strandat 91.583 kb on - strandat 91.583 kb on - strandat 91.583 kb on - strandat 91.584 kb on + strandat 91.584 kb on + strandat 91.585 kb on - strandat 91.585 kb on - strandat 91.585 kb on - strandat 91.610 kb on - strandat 91.623 kb on - strandat 91.645 kb on + strandat 91.665 kb on + strandat 91.698 kb on - strandat 91.817 kb on + strand, within EX28DRAFT_3881at 91.819 kb on + strand, within EX28DRAFT_3881at 91.820 kb on - strand, within EX28DRAFT_3881at 91.884 kb on + strand, within EX28DRAFT_3881at 91.929 kb on + strand, within EX28DRAFT_3881at 91.930 kb on - strand, within EX28DRAFT_3881at 91.993 kb on - strand, within EX28DRAFT_3881at 92.105 kb on + strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.106 kb on - strand, within EX28DRAFT_3881at 92.271 kb on + strand, within EX28DRAFT_3881at 92.298 kb on - strand, within EX28DRAFT_3881at 92.340 kb on + strand, within EX28DRAFT_3881at 92.340 kb on + strand, within EX28DRAFT_3881at 92.341 kb on - strand, within EX28DRAFT_3881at 92.395 kb on + strand, within EX28DRAFT_3881at 92.584 kb on - strandat 92.610 kb on + strandat 92.611 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
89,675 + EX28DRAFT_3879 0.26 +0.1
89,676 - EX28DRAFT_3879 0.26 +1.6
89,760 - EX28DRAFT_3879 0.34 +1.7
89,805 - EX28DRAFT_3879 0.38 +0.8
90,230 + EX28DRAFT_3879 0.75 +0.3
90,231 - EX28DRAFT_3879 0.75 +0.8
90,521 + +1.3
90,528 + +0.8
90,528 + +1.1
90,529 - +1.7
90,529 - +1.0
90,570 + +1.0
90,570 + +1.4
90,570 + +1.9
90,570 + +0.8
90,570 + +2.0
90,570 + +1.7
90,570 + +1.3
90,571 - +0.7
90,571 - +1.6
90,571 - +1.2
90,571 - +1.2
90,571 - +0.7
90,571 - +1.1
90,571 - +0.8
90,571 - +0.5
90,588 - +1.4
90,590 + +1.1
90,590 + +1.2
90,590 + +0.8
90,614 + +1.4
90,614 + +0.9
90,615 - +1.7
90,615 - +0.6
90,687 + EX28DRAFT_3880 0.16 -0.1
90,687 + EX28DRAFT_3880 0.16 +1.0
90,687 + EX28DRAFT_3880 0.16 +1.3
90,688 - EX28DRAFT_3880 0.16 +1.2
90,688 - EX28DRAFT_3880 0.16 +0.1
90,688 - EX28DRAFT_3880 0.16 +1.8
90,887 - EX28DRAFT_3880 0.34 +2.0
90,921 + EX28DRAFT_3880 0.37 +0.8
90,922 - EX28DRAFT_3880 0.37 +1.2
90,930 + EX28DRAFT_3880 0.38 +1.2
90,931 - EX28DRAFT_3880 0.38 +1.4
90,943 - EX28DRAFT_3880 0.39 +1.9
90,943 - EX28DRAFT_3880 0.39 +1.4
90,943 - EX28DRAFT_3880 0.39 +1.2
90,946 + EX28DRAFT_3880 0.40 -0.3
91,042 - EX28DRAFT_3880 0.48 +1.5
91,108 + EX28DRAFT_3880 0.54 +1.4
91,108 + EX28DRAFT_3880 0.54 +1.9
91,109 - EX28DRAFT_3880 0.54 +1.4
91,113 + EX28DRAFT_3880 0.55 +1.5
91,113 + EX28DRAFT_3880 0.55 +1.2
91,114 - EX28DRAFT_3880 0.55 +0.6
91,114 - EX28DRAFT_3880 0.55 +1.6
91,114 - EX28DRAFT_3880 0.55 +1.5
91,114 - EX28DRAFT_3880 0.55 +1.1
91,160 + EX28DRAFT_3880 0.59 +1.5
91,161 - EX28DRAFT_3880 0.59 +2.4
91,161 - EX28DRAFT_3880 0.59 +0.9
91,161 - EX28DRAFT_3880 0.59 +1.4
91,334 + EX28DRAFT_3880 0.75 +1.4
91,335 - EX28DRAFT_3880 0.75 +1.1
91,340 + EX28DRAFT_3880 0.75 +1.2
91,340 + EX28DRAFT_3880 0.75 +1.4
91,340 + EX28DRAFT_3880 0.75 +1.1
91,340 + EX28DRAFT_3880 0.75 +1.7
91,341 - EX28DRAFT_3880 0.75 +0.6
91,341 - EX28DRAFT_3880 0.75 +1.2
91,341 - EX28DRAFT_3880 0.75 +1.1
91,366 - EX28DRAFT_3880 0.78 +0.6
91,386 + EX28DRAFT_3880 0.79 +1.6
91,386 + EX28DRAFT_3880 0.79 +1.5
91,411 - EX28DRAFT_3880 0.82 +0.9
91,411 - EX28DRAFT_3880 0.82 +1.3
91,475 + EX28DRAFT_3880 0.88 +1.8
91,475 + EX28DRAFT_3880 0.88 +1.4
91,475 + EX28DRAFT_3880 0.88 +1.6
91,476 - EX28DRAFT_3880 0.88 +1.3
91,476 - EX28DRAFT_3880 0.88 +1.1
91,509 + +1.4
91,510 - +2.1
91,513 + +1.9
91,513 + +2.1
91,513 + +1.7
91,513 + +2.2
91,514 - +0.5
91,514 - +1.3
91,514 - +1.8
91,514 - +1.6
91,516 - +1.1
91,582 + +1.5
91,582 + +1.4
91,582 + +1.6
91,582 + +1.2
91,582 + -0.7
91,583 - +1.0
91,583 - +1.1
91,583 - +1.4
91,584 + +0.2
91,584 + -0.6
91,585 - -0.4
91,585 - +0.7
91,585 - +1.1
91,610 - +1.2
91,623 - -0.0
91,645 + -0.3
91,665 + +0.1
91,698 - -0.6
91,817 + EX28DRAFT_3881 0.20 -1.9
91,819 + EX28DRAFT_3881 0.20 +0.5
91,820 - EX28DRAFT_3881 0.20 +0.4
91,884 + EX28DRAFT_3881 0.26 -2.7
91,929 + EX28DRAFT_3881 0.31 -0.9
91,930 - EX28DRAFT_3881 0.31 +0.2
91,993 - EX28DRAFT_3881 0.37 +1.3
92,105 + EX28DRAFT_3881 0.49 -0.4
92,106 - EX28DRAFT_3881 0.49 -1.8
92,106 - EX28DRAFT_3881 0.49 +0.5
92,106 - EX28DRAFT_3881 0.49 -0.4
92,106 - EX28DRAFT_3881 0.49 -2.3
92,271 + EX28DRAFT_3881 0.65 +0.0
92,298 - EX28DRAFT_3881 0.68 -0.8
92,340 + EX28DRAFT_3881 0.72 -0.2
92,340 + EX28DRAFT_3881 0.72 +1.3
92,341 - EX28DRAFT_3881 0.73 -0.4
92,395 + EX28DRAFT_3881 0.78 -0.1
92,584 - -1.1
92,610 + +0.4
92,611 - +0.1

Or see this region's nucleotide sequence