Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3856

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3855 and EX28DRAFT_3856 are separated by 181 nucleotidesEX28DRAFT_3856 and EX28DRAFT_3857 are separated by 45 nucleotidesEX28DRAFT_3857 and EX28DRAFT_3858 overlap by 4 nucleotides EX28DRAFT_3855: EX28DRAFT_3855 - L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases, at 65,007 to 66,194 _3855 EX28DRAFT_3856: EX28DRAFT_3856 - Arabinose efflux permease, at 66,376 to 67,716 _3856 EX28DRAFT_3857: EX28DRAFT_3857 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 67,762 to 68,235 _3857 EX28DRAFT_3858: EX28DRAFT_3858 - serine O-acetyltransferase, at 68,232 to 69,053 _3858 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1at 65.392 kb on - strand, within EX28DRAFT_3855at 65.415 kb on - strand, within EX28DRAFT_3855at 65.664 kb on + strand, within EX28DRAFT_3855at 65.665 kb on - strand, within EX28DRAFT_3855at 65.957 kb on + strand, within EX28DRAFT_3855at 65.958 kb on - strand, within EX28DRAFT_3855at 65.983 kb on + strand, within EX28DRAFT_3855at 65.984 kb on - strand, within EX28DRAFT_3855at 66.000 kb on + strand, within EX28DRAFT_3855at 66.001 kb on - strand, within EX28DRAFT_3855at 66.001 kb on - strand, within EX28DRAFT_3855at 66.120 kb on - strandat 66.142 kb on + strandat 66.274 kb on + strandat 66.323 kb on - strandat 66.323 kb on - strandat 66.375 kb on + strandat 66.376 kb on - strandat 66.382 kb on + strandat 66.508 kb on + strandat 66.829 kb on - strand, within EX28DRAFT_3856at 66.829 kb on - strand, within EX28DRAFT_3856at 66.829 kb on - strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.835 kb on + strand, within EX28DRAFT_3856at 66.889 kb on - strand, within EX28DRAFT_3856at 66.947 kb on + strand, within EX28DRAFT_3856at 67.175 kb on - strand, within EX28DRAFT_3856at 67.180 kb on - strand, within EX28DRAFT_3856at 67.195 kb on + strand, within EX28DRAFT_3856at 67.196 kb on - strand, within EX28DRAFT_3856at 67.198 kb on + strand, within EX28DRAFT_3856at 67.198 kb on + strand, within EX28DRAFT_3856at 67.198 kb on + strand, within EX28DRAFT_3856at 67.199 kb on - strand, within EX28DRAFT_3856at 67.208 kb on + strand, within EX28DRAFT_3856at 67.408 kb on - strand, within EX28DRAFT_3856at 67.684 kb on + strandat 67.685 kb on - strandat 67.714 kb on + strandat 67.714 kb on + strandat 67.715 kb on - strandat 67.715 kb on - strandat 67.751 kb on - strandat 67.812 kb on + strand, within EX28DRAFT_3857at 67.813 kb on - strand, within EX28DRAFT_3857at 67.872 kb on + strand, within EX28DRAFT_3857at 67.873 kb on - strand, within EX28DRAFT_3857at 68.019 kb on + strand, within EX28DRAFT_3857at 68.047 kb on + strand, within EX28DRAFT_3857at 68.047 kb on + strand, within EX28DRAFT_3857at 68.048 kb on - strand, within EX28DRAFT_3857at 68.186 kb on - strand, within EX28DRAFT_3857at 68.186 kb on - strand, within EX28DRAFT_3857at 68.186 kb on - strand, within EX28DRAFT_3857at 68.233 kb on + strandat 68.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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65,392 - EX28DRAFT_3855 0.32 +0.5
65,415 - EX28DRAFT_3855 0.34 +0.7
65,664 + EX28DRAFT_3855 0.55 -2.9
65,665 - EX28DRAFT_3855 0.55 +0.3
65,957 + EX28DRAFT_3855 0.80 +0.7
65,958 - EX28DRAFT_3855 0.80 -0.3
65,983 + EX28DRAFT_3855 0.82 -1.3
65,984 - EX28DRAFT_3855 0.82 +0.6
66,000 + EX28DRAFT_3855 0.84 +0.1
66,001 - EX28DRAFT_3855 0.84 +0.3
66,001 - EX28DRAFT_3855 0.84 +0.1
66,120 - +1.0
66,142 + +1.4
66,274 + +0.2
66,323 - +0.6
66,323 - +0.1
66,375 + -0.3
66,376 - +0.0
66,382 + +0.9
66,508 + +0.0
66,829 - EX28DRAFT_3856 0.34 +1.2
66,829 - EX28DRAFT_3856 0.34 +0.6
66,829 - EX28DRAFT_3856 0.34 +0.3
66,835 + EX28DRAFT_3856 0.34 -0.0
66,835 + EX28DRAFT_3856 0.34 -0.0
66,835 + EX28DRAFT_3856 0.34 -0.5
66,835 + EX28DRAFT_3856 0.34 +0.2
66,889 - EX28DRAFT_3856 0.38 +0.8
66,947 + EX28DRAFT_3856 0.43 -0.5
67,175 - EX28DRAFT_3856 0.60 +0.8
67,180 - EX28DRAFT_3856 0.60 +0.1
67,195 + EX28DRAFT_3856 0.61 -0.2
67,196 - EX28DRAFT_3856 0.61 -0.6
67,198 + EX28DRAFT_3856 0.61 +0.1
67,198 + EX28DRAFT_3856 0.61 +0.6
67,198 + EX28DRAFT_3856 0.61 +1.2
67,199 - EX28DRAFT_3856 0.61 +0.5
67,208 + EX28DRAFT_3856 0.62 +0.3
67,408 - EX28DRAFT_3856 0.77 +0.4
67,684 + +0.2
67,685 - -0.0
67,714 + -1.8
67,714 + -0.2
67,715 - +0.3
67,715 - -0.0
67,751 - -1.4
67,812 + EX28DRAFT_3857 0.11 +0.9
67,813 - EX28DRAFT_3857 0.11 -0.5
67,872 + EX28DRAFT_3857 0.23 -0.2
67,873 - EX28DRAFT_3857 0.23 -0.8
68,019 + EX28DRAFT_3857 0.54 -0.8
68,047 + EX28DRAFT_3857 0.60 +0.5
68,047 + EX28DRAFT_3857 0.60 +0.7
68,048 - EX28DRAFT_3857 0.60 -0.0
68,186 - EX28DRAFT_3857 0.89 +0.3
68,186 - EX28DRAFT_3857 0.89 -0.4
68,186 - EX28DRAFT_3857 0.89 +0.4
68,233 + +0.3
68,259 - -1.3

Or see this region's nucleotide sequence