Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3843 and EX28DRAFT_3844 are separated by 85 nucleotides EX28DRAFT_3844 and EX28DRAFT_3845 overlap by 4 nucleotides
EX28DRAFT_3843: EX28DRAFT_3843 - NAD-dependent aldehyde dehydrogenases, at 50,273 to 51,811
_3843
EX28DRAFT_3844: EX28DRAFT_3844 - selenocysteine-specific elongation factor SelB, at 51,897 to 53,744
_3844
EX28DRAFT_3845: EX28DRAFT_3845 - L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1), at 53,741 to 55,126
_3845
Position (kb) 51
52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 51.042 kb on + strand, within EX28DRAFT_3843 at 51.050 kb on - strand, within EX28DRAFT_3843 at 51.117 kb on + strand, within EX28DRAFT_3843 at 51.368 kb on + strand, within EX28DRAFT_3843 at 51.378 kb on - strand, within EX28DRAFT_3843 at 51.547 kb on + strand, within EX28DRAFT_3843 at 51.572 kb on - strand, within EX28DRAFT_3843 at 51.583 kb on + strand, within EX28DRAFT_3843 at 51.584 kb on - strand, within EX28DRAFT_3843 at 51.687 kb on + strand at 51.688 kb on - strand at 51.690 kb on + strand at 51.728 kb on - strand at 51.835 kb on - strand at 51.845 kb on + strand at 51.845 kb on + strand at 51.846 kb on - strand at 51.887 kb on - strand at 51.933 kb on + strand at 51.980 kb on - strand at 52.167 kb on + strand, within EX28DRAFT_3844 at 52.476 kb on + strand, within EX28DRAFT_3844 at 52.477 kb on - strand, within EX28DRAFT_3844 at 52.482 kb on - strand, within EX28DRAFT_3844 at 52.563 kb on + strand, within EX28DRAFT_3844 at 52.769 kb on + strand, within EX28DRAFT_3844 at 52.769 kb on + strand, within EX28DRAFT_3844 at 53.082 kb on + strand, within EX28DRAFT_3844 at 53.082 kb on + strand, within EX28DRAFT_3844 at 53.082 kb on + strand, within EX28DRAFT_3844 at 53.083 kb on - strand, within EX28DRAFT_3844 at 53.083 kb on - strand, within EX28DRAFT_3844 at 53.129 kb on + strand, within EX28DRAFT_3844 at 53.136 kb on + strand, within EX28DRAFT_3844 at 53.136 kb on + strand, within EX28DRAFT_3844 at 53.196 kb on - strand, within EX28DRAFT_3844 at 53.262 kb on + strand, within EX28DRAFT_3844 at 53.338 kb on + strand, within EX28DRAFT_3844 at 53.339 kb on - strand, within EX28DRAFT_3844 at 53.579 kb on + strand at 53.579 kb on + strand at 53.580 kb on - strand at 53.615 kb on - strand at 53.615 kb on - strand at 53.738 kb on + strand at 53.738 kb on + strand at 53.739 kb on - strand at 53.814 kb on + strand at 53.815 kb on - strand at 53.815 kb on - strand at 53.995 kb on - strand, within EX28DRAFT_3845 at 54.020 kb on + strand, within EX28DRAFT_3845 at 54.020 kb on + strand, within EX28DRAFT_3845 at 54.021 kb on - strand, within EX28DRAFT_3845 at 54.021 kb on - strand, within EX28DRAFT_3845 at 54.021 kb on - strand, within EX28DRAFT_3845 at 54.073 kb on + strand, within EX28DRAFT_3845 at 54.073 kb on + strand, within EX28DRAFT_3845 at 54.074 kb on - strand, within EX28DRAFT_3845 at 54.310 kb on + strand, within EX28DRAFT_3845 at 54.436 kb on + strand, within EX28DRAFT_3845 at 54.441 kb on + strand, within EX28DRAFT_3845 at 54.441 kb on + strand, within EX28DRAFT_3845 at 54.441 kb on + strand, within EX28DRAFT_3845 at 54.442 kb on - strand, within EX28DRAFT_3845 at 54.442 kb on - strand, within EX28DRAFT_3845 at 54.442 kb on - strand, within EX28DRAFT_3845 at 54.442 kb on - strand, within EX28DRAFT_3845 at 54.498 kb on + strand, within EX28DRAFT_3845 at 54.545 kb on - strand, within EX28DRAFT_3845
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 51,042 + EX28DRAFT_3843 0.50 -0.9 51,050 - EX28DRAFT_3843 0.50 -1.1 51,117 + EX28DRAFT_3843 0.55 +2.3 51,368 + EX28DRAFT_3843 0.71 -0.7 51,378 - EX28DRAFT_3843 0.72 +0.1 51,547 + EX28DRAFT_3843 0.83 +0.4 51,572 - EX28DRAFT_3843 0.84 +1.4 51,583 + EX28DRAFT_3843 0.85 -1.2 51,584 - EX28DRAFT_3843 0.85 -1.0 51,687 + -0.6 51,688 - -0.4 51,690 + -0.2 51,728 - -0.9 51,835 - -1.4 51,845 + +1.3 51,845 + -0.4 51,846 - -0.6 51,887 - -1.7 51,933 + +0.5 51,980 - +1.7 52,167 + EX28DRAFT_3844 0.15 -0.7 52,476 + EX28DRAFT_3844 0.31 +4.2 52,477 - EX28DRAFT_3844 0.31 -0.3 52,482 - EX28DRAFT_3844 0.32 -0.8 52,563 + EX28DRAFT_3844 0.36 +0.3 52,769 + EX28DRAFT_3844 0.47 -0.3 52,769 + EX28DRAFT_3844 0.47 -0.2 53,082 + EX28DRAFT_3844 0.64 +0.0 53,082 + EX28DRAFT_3844 0.64 -0.0 53,082 + EX28DRAFT_3844 0.64 +0.3 53,083 - EX28DRAFT_3844 0.64 +1.3 53,083 - EX28DRAFT_3844 0.64 -0.5 53,129 + EX28DRAFT_3844 0.67 -3.3 53,136 + EX28DRAFT_3844 0.67 +0.1 53,136 + EX28DRAFT_3844 0.67 -1.4 53,196 - EX28DRAFT_3844 0.70 -1.3 53,262 + EX28DRAFT_3844 0.74 +0.2 53,338 + EX28DRAFT_3844 0.78 -1.2 53,339 - EX28DRAFT_3844 0.78 +0.1 53,579 + +0.1 53,579 + -0.9 53,580 - -1.3 53,615 - -0.4 53,615 - +1.2 53,738 + -1.6 53,738 + -0.2 53,739 - -0.4 53,814 + -1.2 53,815 - -0.1 53,815 - +1.4 53,995 - EX28DRAFT_3845 0.18 -0.5 54,020 + EX28DRAFT_3845 0.20 -0.4 54,020 + EX28DRAFT_3845 0.20 +0.6 54,021 - EX28DRAFT_3845 0.20 -0.5 54,021 - EX28DRAFT_3845 0.20 -0.1 54,021 - EX28DRAFT_3845 0.20 -0.6 54,073 + EX28DRAFT_3845 0.24 -0.0 54,073 + EX28DRAFT_3845 0.24 -0.3 54,074 - EX28DRAFT_3845 0.24 -2.1 54,310 + EX28DRAFT_3845 0.41 +0.0 54,436 + EX28DRAFT_3845 0.50 -0.1 54,441 + EX28DRAFT_3845 0.51 -0.1 54,441 + EX28DRAFT_3845 0.51 -1.6 54,441 + EX28DRAFT_3845 0.51 -0.3 54,442 - EX28DRAFT_3845 0.51 -0.4 54,442 - EX28DRAFT_3845 0.51 -2.7 54,442 - EX28DRAFT_3845 0.51 -1.6 54,442 - EX28DRAFT_3845 0.51 -0.4 54,498 + EX28DRAFT_3845 0.55 +1.0 54,545 - EX28DRAFT_3845 0.58 -0.4
Or see this region's nucleotide sequence