Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3816 and EX28DRAFT_3817 are separated by 26 nucleotides EX28DRAFT_3817 and EX28DRAFT_3818 are separated by 2 nucleotides EX28DRAFT_3818 and EX28DRAFT_3819 overlap by 370 nucleotides EX28DRAFT_3819 and EX28DRAFT_3820 are separated by 246 nucleotides
EX28DRAFT_3816: EX28DRAFT_3816 - Sugar phosphate permease, at 20,588 to 21,868
_3816
EX28DRAFT_3817: EX28DRAFT_3817 - Lactate dehydrogenase and related dehydrogenases, at 21,895 to 22,869
_3817
EX28DRAFT_3818: EX28DRAFT_3818 - RNA, at 22,872 to 23,297
_3818
EX28DRAFT_3819: EX28DRAFT_3819 - Cold shock proteins, at 22,928 to 23,140
_3819
EX28DRAFT_3820: EX28DRAFT_3820 - Protein of unknown function (DUF3053), at 23,387 to 24,097
_3820
Position (kb) 21
22
23 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 20.963 kb on + strand, within EX28DRAFT_3816 at 20.963 kb on + strand, within EX28DRAFT_3816 at 20.964 kb on - strand, within EX28DRAFT_3816 at 20.964 kb on - strand, within EX28DRAFT_3816 at 20.981 kb on - strand, within EX28DRAFT_3816 at 21.007 kb on + strand, within EX28DRAFT_3816 at 21.258 kb on - strand, within EX28DRAFT_3816 at 21.306 kb on - strand, within EX28DRAFT_3816 at 21.306 kb on - strand, within EX28DRAFT_3816 at 21.310 kb on + strand, within EX28DRAFT_3816 at 21.390 kb on + strand, within EX28DRAFT_3816 at 21.420 kb on - strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.570 kb on - strand, within EX28DRAFT_3816 at 21.571 kb on + strand, within EX28DRAFT_3816 at 21.571 kb on + strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.603 kb on - strand, within EX28DRAFT_3816 at 21.603 kb on - strand, within EX28DRAFT_3816 at 21.688 kb on + strand, within EX28DRAFT_3816 at 21.767 kb on + strand at 21.767 kb on + strand at 21.767 kb on + strand at 21.767 kb on + strand at 21.916 kb on + strand at 22.101 kb on + strand, within EX28DRAFT_3817 at 22.124 kb on - strand, within EX28DRAFT_3817 at 22.176 kb on + strand, within EX28DRAFT_3817 at 22.176 kb on + strand, within EX28DRAFT_3817 at 22.226 kb on + strand, within EX28DRAFT_3817 at 22.398 kb on + strand, within EX28DRAFT_3817 at 22.838 kb on + strand at 22.839 kb on - strand at 22.868 kb on - strand at 22.929 kb on + strand at 22.930 kb on - strand at 22.938 kb on - strand at 22.946 kb on - strand at 23.046 kb on - strand at 23.140 kb on + strand at 23.141 kb on - strand at 23.141 kb on - strand at 23.152 kb on + strand at 23.162 kb on + strand at 23.162 kb on + strand at 23.165 kb on - strand at 23.205 kb on - strand at 23.205 kb on - strand at 23.236 kb on - strand at 23.239 kb on + strand at 23.240 kb on - strand at 23.264 kb on - strand at 23.276 kb on + strand at 23.277 kb on - strand at 23.303 kb on + strand at 23.307 kb on + strand at 23.307 kb on + strand at 23.338 kb on + strand at 23.389 kb on - strand at 23.470 kb on - strand, within EX28DRAFT_3820 at 23.641 kb on - strand, within EX28DRAFT_3820 at 23.785 kb on + strand, within EX28DRAFT_3820 at 23.785 kb on + strand, within EX28DRAFT_3820 at 23.785 kb on + strand, within EX28DRAFT_3820 at 23.785 kb on + strand, within EX28DRAFT_3820 at 23.786 kb on - strand, within EX28DRAFT_3820 at 23.786 kb on - strand, within EX28DRAFT_3820 at 23.787 kb on + strand, within EX28DRAFT_3820 at 23.787 kb on + strand, within EX28DRAFT_3820 at 23.787 kb on + strand, within EX28DRAFT_3820 at 23.787 kb on + strand, within EX28DRAFT_3820 at 23.788 kb on - strand, within EX28DRAFT_3820 at 23.825 kb on + strand, within EX28DRAFT_3820
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 20,963 + EX28DRAFT_3816 0.29 +0.4 20,963 + EX28DRAFT_3816 0.29 +0.4 20,964 - EX28DRAFT_3816 0.29 +0.0 20,964 - EX28DRAFT_3816 0.29 +0.6 20,981 - EX28DRAFT_3816 0.31 -2.3 21,007 + EX28DRAFT_3816 0.33 +0.7 21,258 - EX28DRAFT_3816 0.52 +1.2 21,306 - EX28DRAFT_3816 0.56 +0.2 21,306 - EX28DRAFT_3816 0.56 -0.0 21,310 + EX28DRAFT_3816 0.56 +0.0 21,390 + EX28DRAFT_3816 0.63 -0.8 21,420 - EX28DRAFT_3816 0.65 -1.7 21,569 + EX28DRAFT_3816 0.77 -2.3 21,569 + EX28DRAFT_3816 0.77 -0.1 21,569 + EX28DRAFT_3816 0.77 -1.4 21,569 + EX28DRAFT_3816 0.77 +2.8 21,570 - EX28DRAFT_3816 0.77 +0.2 21,571 + EX28DRAFT_3816 0.77 -0.4 21,571 + EX28DRAFT_3816 0.77 +0.1 21,572 - EX28DRAFT_3816 0.77 -0.7 21,572 - EX28DRAFT_3816 0.77 +0.1 21,572 - EX28DRAFT_3816 0.77 -0.2 21,602 + EX28DRAFT_3816 0.79 +0.5 21,602 + EX28DRAFT_3816 0.79 -0.2 21,602 + EX28DRAFT_3816 0.79 -1.1 21,602 + EX28DRAFT_3816 0.79 -0.3 21,602 + EX28DRAFT_3816 0.79 +0.4 21,602 + EX28DRAFT_3816 0.79 +0.2 21,602 + EX28DRAFT_3816 0.79 -2.3 21,603 - EX28DRAFT_3816 0.79 -0.8 21,603 - EX28DRAFT_3816 0.79 +0.4 21,688 + EX28DRAFT_3816 0.86 -0.6 21,767 + -0.3 21,767 + -1.6 21,767 + +0.6 21,767 + -1.7 21,916 + -0.3 22,101 + EX28DRAFT_3817 0.21 -1.0 22,124 - EX28DRAFT_3817 0.23 +0.3 22,176 + EX28DRAFT_3817 0.29 +0.9 22,176 + EX28DRAFT_3817 0.29 +0.7 22,226 + EX28DRAFT_3817 0.34 -0.6 22,398 + EX28DRAFT_3817 0.52 +0.6 22,838 + +0.5 22,839 - +0.3 22,868 - +2.3 22,929 + -1.2 22,930 - -0.5 22,938 - +0.2 22,946 - +2.5 23,046 - -2.0 23,140 + +0.8 23,141 - -0.3 23,141 - -0.4 23,152 + -1.3 23,162 + +1.9 23,162 + -0.4 23,165 - -0.5 23,205 - -1.0 23,205 - +1.7 23,236 - -0.3 23,239 + +1.9 23,240 - -0.7 23,264 - +0.3 23,276 + +0.3 23,277 - -0.9 23,303 + -0.1 23,307 + +1.0 23,307 + -1.4 23,338 + -0.4 23,389 - -0.4 23,470 - EX28DRAFT_3820 0.12 +0.9 23,641 - EX28DRAFT_3820 0.36 -1.1 23,785 + EX28DRAFT_3820 0.56 +0.0 23,785 + EX28DRAFT_3820 0.56 +1.3 23,785 + EX28DRAFT_3820 0.56 -1.6 23,785 + EX28DRAFT_3820 0.56 +0.1 23,786 - EX28DRAFT_3820 0.56 +0.1 23,786 - EX28DRAFT_3820 0.56 -1.1 23,787 + EX28DRAFT_3820 0.56 +1.9 23,787 + EX28DRAFT_3820 0.56 +0.1 23,787 + EX28DRAFT_3820 0.56 -2.4 23,787 + EX28DRAFT_3820 0.56 -0.2 23,788 - EX28DRAFT_3820 0.56 -0.4 23,825 + EX28DRAFT_3820 0.62 +0.3
Or see this region's nucleotide sequence