Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3807 and EX28DRAFT_3808 are separated by 238 nucleotides EX28DRAFT_3808 and EX28DRAFT_3809 are separated by 154 nucleotides EX28DRAFT_3809 and EX28DRAFT_3810 overlap by 23 nucleotides
EX28DRAFT_3807: EX28DRAFT_3807 - oxalate/formate antiporter family transporter, at 11,103 to 12,305
_3807
EX28DRAFT_3808: EX28DRAFT_3808 - Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion, at 12,544 to 13,242
_3808
EX28DRAFT_3809: EX28DRAFT_3809 - DNA-3-methyladenine glycosylase I (EC 3.2.2.20), at 13,397 to 13,978
_3809
EX28DRAFT_3810: EX28DRAFT_3810 - Acetyltransferase (GNAT) domain, at 13,956 to 14,402
_3810
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 11.611 kb on + strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.612 kb on - strand, within EX28DRAFT_3807 at 11.670 kb on - strand, within EX28DRAFT_3807 at 11.801 kb on + strand, within EX28DRAFT_3807 at 11.801 kb on + strand, within EX28DRAFT_3807 at 11.802 kb on - strand, within EX28DRAFT_3807 at 11.875 kb on + strand, within EX28DRAFT_3807 at 11.875 kb on + strand, within EX28DRAFT_3807 at 12.206 kb on + strand at 12.206 kb on + strand at 12.224 kb on - strand at 12.270 kb on - strand at 12.287 kb on + strand at 12.290 kb on - strand at 12.290 kb on - strand at 12.290 kb on - strand at 12.329 kb on + strand at 12.366 kb on + strand at 12.366 kb on + strand at 12.575 kb on - strand at 12.575 kb on - strand at 12.758 kb on + strand, within EX28DRAFT_3808 at 12.763 kb on - strand, within EX28DRAFT_3808 at 13.006 kb on + strand, within EX28DRAFT_3808 at 13.006 kb on + strand, within EX28DRAFT_3808 at 13.007 kb on - strand, within EX28DRAFT_3808 at 13.007 kb on - strand, within EX28DRAFT_3808 at 13.007 kb on - strand, within EX28DRAFT_3808 at 13.008 kb on + strand, within EX28DRAFT_3808 at 13.009 kb on - strand, within EX28DRAFT_3808 at 13.009 kb on - strand, within EX28DRAFT_3808 at 13.009 kb on - strand, within EX28DRAFT_3808 at 13.048 kb on - strand, within EX28DRAFT_3808 at 13.063 kb on - strand, within EX28DRAFT_3808 at 13.063 kb on - strand, within EX28DRAFT_3808 at 13.098 kb on + strand, within EX28DRAFT_3808 at 13.098 kb on + strand, within EX28DRAFT_3808 at 13.099 kb on - strand, within EX28DRAFT_3808 at 13.099 kb on - strand, within EX28DRAFT_3808 at 13.099 kb on - strand, within EX28DRAFT_3808 at 13.099 kb on - strand, within EX28DRAFT_3808 at 13.116 kb on + strand, within EX28DRAFT_3808 at 13.137 kb on + strand, within EX28DRAFT_3808 at 13.138 kb on - strand, within EX28DRAFT_3808 at 13.139 kb on + strand, within EX28DRAFT_3808 at 13.139 kb on + strand, within EX28DRAFT_3808 at 13.139 kb on + strand, within EX28DRAFT_3808 at 13.139 kb on + strand, within EX28DRAFT_3808 at 13.140 kb on - strand, within EX28DRAFT_3808 at 13.165 kb on - strand, within EX28DRAFT_3808 at 13.165 kb on - strand, within EX28DRAFT_3808 at 13.235 kb on - strand at 13.276 kb on + strand at 13.304 kb on - strand at 13.312 kb on + strand at 13.312 kb on + strand at 13.316 kb on - strand at 13.316 kb on - strand at 13.319 kb on + strand at 13.319 kb on + strand at 13.319 kb on + strand at 13.320 kb on - strand at 13.320 kb on - strand at 13.320 kb on - strand at 13.331 kb on - strand at 13.331 kb on - strand at 13.334 kb on - strand at 13.334 kb on - strand at 13.382 kb on + strand at 13.433 kb on + strand at 13.433 kb on + strand at 13.434 kb on - strand at 13.434 kb on - strand at 13.435 kb on + strand at 13.537 kb on + strand, within EX28DRAFT_3809 at 13.538 kb on - strand, within EX28DRAFT_3809 at 13.892 kb on - strand, within EX28DRAFT_3809 at 14.142 kb on - strand, within EX28DRAFT_3810
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 11,611 + EX28DRAFT_3807 0.42 -0.0 11,612 - EX28DRAFT_3807 0.42 +0.1 11,612 - EX28DRAFT_3807 0.42 +0.1 11,612 - EX28DRAFT_3807 0.42 -0.3 11,612 - EX28DRAFT_3807 0.42 -0.8 11,612 - EX28DRAFT_3807 0.42 +0.4 11,612 - EX28DRAFT_3807 0.42 -1.0 11,670 - EX28DRAFT_3807 0.47 -0.2 11,801 + EX28DRAFT_3807 0.58 -0.0 11,801 + EX28DRAFT_3807 0.58 -0.5 11,802 - EX28DRAFT_3807 0.58 -0.0 11,875 + EX28DRAFT_3807 0.64 -0.4 11,875 + EX28DRAFT_3807 0.64 -0.1 12,206 + +0.5 12,206 + -0.6 12,224 - -0.0 12,270 - -1.1 12,287 + +0.4 12,290 - -0.6 12,290 - +0.4 12,290 - +0.5 12,329 + +0.7 12,366 + +0.3 12,366 + -1.4 12,575 - +0.2 12,575 - +0.0 12,758 + EX28DRAFT_3808 0.31 -0.1 12,763 - EX28DRAFT_3808 0.31 +0.2 13,006 + EX28DRAFT_3808 0.66 -0.2 13,006 + EX28DRAFT_3808 0.66 +0.4 13,007 - EX28DRAFT_3808 0.66 +0.2 13,007 - EX28DRAFT_3808 0.66 -1.3 13,007 - EX28DRAFT_3808 0.66 -0.3 13,008 + EX28DRAFT_3808 0.66 +1.5 13,009 - EX28DRAFT_3808 0.67 -0.2 13,009 - EX28DRAFT_3808 0.67 +0.1 13,009 - EX28DRAFT_3808 0.67 -0.4 13,048 - EX28DRAFT_3808 0.72 -0.8 13,063 - EX28DRAFT_3808 0.74 +0.3 13,063 - EX28DRAFT_3808 0.74 +0.9 13,098 + EX28DRAFT_3808 0.79 +0.3 13,098 + EX28DRAFT_3808 0.79 +0.5 13,099 - EX28DRAFT_3808 0.79 -0.1 13,099 - EX28DRAFT_3808 0.79 -0.8 13,099 - EX28DRAFT_3808 0.79 -0.3 13,099 - EX28DRAFT_3808 0.79 -2.9 13,116 + EX28DRAFT_3808 0.82 -0.8 13,137 + EX28DRAFT_3808 0.85 +0.3 13,138 - EX28DRAFT_3808 0.85 -0.7 13,139 + EX28DRAFT_3808 0.85 -0.8 13,139 + EX28DRAFT_3808 0.85 +0.4 13,139 + EX28DRAFT_3808 0.85 -0.9 13,139 + EX28DRAFT_3808 0.85 +0.1 13,140 - EX28DRAFT_3808 0.85 -2.1 13,165 - EX28DRAFT_3808 0.89 +0.3 13,165 - EX28DRAFT_3808 0.89 -0.7 13,235 - -0.8 13,276 + -0.3 13,304 - -1.1 13,312 + -0.3 13,312 + -0.1 13,316 - -0.3 13,316 - +0.2 13,319 + -0.2 13,319 + -1.1 13,319 + -0.8 13,320 - +1.1 13,320 - +0.2 13,320 - -1.0 13,331 - +0.8 13,331 - +0.4 13,334 - +0.0 13,334 - -0.5 13,382 + -2.4 13,433 + -1.0 13,433 + +0.8 13,434 - -0.7 13,434 - -0.8 13,435 + +0.6 13,537 + EX28DRAFT_3809 0.24 +0.2 13,538 - EX28DRAFT_3809 0.24 +0.3 13,892 - EX28DRAFT_3809 0.85 +1.3 14,142 - EX28DRAFT_3810 0.42 -1.6
Or see this region's nucleotide sequence