Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3712 and EX28DRAFT_3713 are separated by 53 nucleotides EX28DRAFT_3713 and EX28DRAFT_3714 overlap by 38 nucleotides EX28DRAFT_3714 and EX28DRAFT_3715 are separated by 248 nucleotides
EX28DRAFT_3712: EX28DRAFT_3712 - dihydrolipoamide dehydrogenase, at 384,996 to 386,420
_3712
EX28DRAFT_3713: EX28DRAFT_3713 - Protein of unknown function (DUF2950), at 386,474 to 387,313
_3713
EX28DRAFT_3714: EX28DRAFT_3714 - Protein of unknown function (DUF3300), at 387,276 to 388,835
_3714
EX28DRAFT_3715: EX28DRAFT_3715 - aconitase (EC 4.2.1.3), at 389,084 to 391,832
_3715
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.418 kb on + strand at 386.501 kb on - strand at 386.510 kb on - strand at 386.565 kb on + strand, within EX28DRAFT_3713 at 386.565 kb on + strand, within EX28DRAFT_3713 at 386.566 kb on - strand, within EX28DRAFT_3713 at 386.566 kb on - strand, within EX28DRAFT_3713 at 386.847 kb on + strand, within EX28DRAFT_3713 at 386.848 kb on - strand, within EX28DRAFT_3713 at 386.855 kb on + strand, within EX28DRAFT_3713 at 386.855 kb on + strand, within EX28DRAFT_3713 at 386.856 kb on - strand, within EX28DRAFT_3713 at 386.856 kb on - strand, within EX28DRAFT_3713 at 386.856 kb on - strand, within EX28DRAFT_3713 at 387.256 kb on + strand at 387.560 kb on + strand, within EX28DRAFT_3714 at 387.577 kb on + strand, within EX28DRAFT_3714 at 387.909 kb on - strand, within EX28DRAFT_3714 at 388.013 kb on - strand, within EX28DRAFT_3714 at 388.083 kb on - strand, within EX28DRAFT_3714 at 388.093 kb on + strand, within EX28DRAFT_3714 at 388.094 kb on - strand, within EX28DRAFT_3714 at 388.147 kb on + strand, within EX28DRAFT_3714 at 388.147 kb on + strand, within EX28DRAFT_3714 at 388.148 kb on - strand, within EX28DRAFT_3714 at 388.148 kb on - strand, within EX28DRAFT_3714 at 388.148 kb on - strand, within EX28DRAFT_3714 at 388.148 kb on - strand, within EX28DRAFT_3714 at 388.148 kb on - strand, within EX28DRAFT_3714 at 388.148 kb on - strand, within EX28DRAFT_3714 at 388.160 kb on - strand, within EX28DRAFT_3714 at 388.302 kb on + strand, within EX28DRAFT_3714 at 388.427 kb on + strand, within EX28DRAFT_3714 at 388.427 kb on + strand, within EX28DRAFT_3714 at 388.427 kb on + strand, within EX28DRAFT_3714 at 388.428 kb on - strand, within EX28DRAFT_3714 at 388.428 kb on - strand, within EX28DRAFT_3714 at 388.428 kb on - strand, within EX28DRAFT_3714 at 388.428 kb on - strand, within EX28DRAFT_3714 at 388.649 kb on - strand, within EX28DRAFT_3714 at 388.649 kb on - strand, within EX28DRAFT_3714 at 388.820 kb on + strand at 388.891 kb on + strand at 388.892 kb on - strand at 388.892 kb on - strand at 388.895 kb on - strand at 388.895 kb on - strand at 388.952 kb on - strand at 388.964 kb on + strand at 388.965 kb on - strand at 388.969 kb on - strand at 388.969 kb on - strand at 388.979 kb on + strand at 388.979 kb on + strand at 388.979 kb on + strand at 388.979 kb on + strand at 388.980 kb on - strand at 388.980 kb on - strand at 388.980 kb on - strand at 389.083 kb on - strand at 389.299 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 386,418 + -3.1 386,501 - -0.0 386,510 - -1.0 386,565 + EX28DRAFT_3713 0.11 -0.2 386,565 + EX28DRAFT_3713 0.11 -0.4 386,566 - EX28DRAFT_3713 0.11 +2.6 386,566 - EX28DRAFT_3713 0.11 -0.4 386,847 + EX28DRAFT_3713 0.44 +0.2 386,848 - EX28DRAFT_3713 0.45 -0.8 386,855 + EX28DRAFT_3713 0.45 +0.1 386,855 + EX28DRAFT_3713 0.45 +0.3 386,856 - EX28DRAFT_3713 0.45 +0.8 386,856 - EX28DRAFT_3713 0.45 +0.1 386,856 - EX28DRAFT_3713 0.45 -0.3 387,256 + -0.5 387,560 + EX28DRAFT_3714 0.18 +0.2 387,577 + EX28DRAFT_3714 0.19 +0.1 387,909 - EX28DRAFT_3714 0.41 +2.3 388,013 - EX28DRAFT_3714 0.47 +0.2 388,083 - EX28DRAFT_3714 0.52 -0.1 388,093 + EX28DRAFT_3714 0.52 -0.8 388,094 - EX28DRAFT_3714 0.52 -0.9 388,147 + EX28DRAFT_3714 0.56 -0.6 388,147 + EX28DRAFT_3714 0.56 -0.0 388,148 - EX28DRAFT_3714 0.56 -0.3 388,148 - EX28DRAFT_3714 0.56 +0.7 388,148 - EX28DRAFT_3714 0.56 -0.3 388,148 - EX28DRAFT_3714 0.56 -1.9 388,148 - EX28DRAFT_3714 0.56 -0.2 388,148 - EX28DRAFT_3714 0.56 -0.0 388,160 - EX28DRAFT_3714 0.57 -0.0 388,302 + EX28DRAFT_3714 0.66 +0.1 388,427 + EX28DRAFT_3714 0.74 -1.3 388,427 + EX28DRAFT_3714 0.74 +0.2 388,427 + EX28DRAFT_3714 0.74 +0.1 388,428 - EX28DRAFT_3714 0.74 +0.3 388,428 - EX28DRAFT_3714 0.74 -1.3 388,428 - EX28DRAFT_3714 0.74 +1.7 388,428 - EX28DRAFT_3714 0.74 -0.8 388,649 - EX28DRAFT_3714 0.88 -1.7 388,649 - EX28DRAFT_3714 0.88 +0.8 388,820 + -0.0 388,891 + -1.7 388,892 - -0.7 388,892 - -0.2 388,895 - +0.9 388,895 - -0.4 388,952 - -0.2 388,964 + -0.7 388,965 - -0.7 388,969 - -0.1 388,969 - -0.3 388,979 + -0.8 388,979 + -0.7 388,979 + -2.1 388,979 + -1.2 388,980 - -2.3 388,980 - -0.1 388,980 - +0.5 389,083 - -0.0 389,299 + -0.5
Or see this region's nucleotide sequence