Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3494 and EX28DRAFT_3495 are separated by 50 nucleotides EX28DRAFT_3495 and EX28DRAFT_3496 are separated by 41 nucleotides EX28DRAFT_3496 and EX28DRAFT_3497 are separated by 87 nucleotides
EX28DRAFT_3494: EX28DRAFT_3494 - Sugar-binding cellulase-like, at 156,884 to 157,972
_3494
EX28DRAFT_3495: EX28DRAFT_3495 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 158,023 to 159,417
_3495
EX28DRAFT_3496: EX28DRAFT_3496 - Alpha/beta hydrolase family, at 159,459 to 159,659
_3496
EX28DRAFT_3497: EX28DRAFT_3497 - hypothetical protein, at 159,747 to 160,988
_3497
Position (kb) 158
159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 157.218 kb on - strand, within EX28DRAFT_3494 at 157.328 kb on + strand, within EX28DRAFT_3494 at 157.328 kb on + strand, within EX28DRAFT_3494 at 157.329 kb on - strand, within EX28DRAFT_3494 at 157.389 kb on - strand, within EX28DRAFT_3494 at 157.930 kb on - strand at 157.970 kb on + strand at 157.973 kb on + strand at 157.973 kb on + strand at 157.974 kb on - strand at 157.976 kb on + strand at 158.016 kb on + strand at 158.016 kb on + strand at 158.017 kb on - strand at 158.017 kb on - strand at 158.017 kb on - strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.018 kb on + strand at 158.019 kb on - strand at 158.019 kb on - strand at 158.019 kb on - strand at 158.095 kb on - strand at 158.118 kb on + strand at 158.119 kb on - strand at 158.122 kb on - strand at 158.125 kb on + strand at 158.126 kb on - strand at 158.131 kb on + strand at 158.323 kb on - strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.371 kb on + strand, within EX28DRAFT_3495 at 158.372 kb on - strand, within EX28DRAFT_3495 at 158.392 kb on + strand, within EX28DRAFT_3495 at 158.392 kb on + strand, within EX28DRAFT_3495 at 158.552 kb on - strand, within EX28DRAFT_3495 at 158.569 kb on + strand, within EX28DRAFT_3495 at 158.575 kb on - strand, within EX28DRAFT_3495 at 158.575 kb on - strand, within EX28DRAFT_3495 at 158.628 kb on + strand, within EX28DRAFT_3495 at 158.779 kb on - strand, within EX28DRAFT_3495 at 158.907 kb on + strand, within EX28DRAFT_3495 at 158.908 kb on - strand, within EX28DRAFT_3495 at 158.908 kb on - strand, within EX28DRAFT_3495 at 158.985 kb on + strand, within EX28DRAFT_3495 at 159.073 kb on + strand, within EX28DRAFT_3495 at 159.073 kb on + strand, within EX28DRAFT_3495 at 159.288 kb on + strand at 159.300 kb on + strand at 159.416 kb on - strand at 159.424 kb on + strand at 159.712 kb on - strand at 159.716 kb on - strand at 159.771 kb on + strand at 159.775 kb on - strand at 159.826 kb on - strand at 159.846 kb on + strand at 159.984 kb on - strand, within EX28DRAFT_3497 at 160.044 kb on - strand, within EX28DRAFT_3497 at 160.055 kb on - strand, within EX28DRAFT_3497 at 160.111 kb on - strand, within EX28DRAFT_3497 at 160.241 kb on - strand, within EX28DRAFT_3497 at 160.364 kb on + strand, within EX28DRAFT_3497
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 157,218 - EX28DRAFT_3494 0.31 +0.2 157,328 + EX28DRAFT_3494 0.41 -0.6 157,328 + EX28DRAFT_3494 0.41 -0.2 157,329 - EX28DRAFT_3494 0.41 +1.5 157,389 - EX28DRAFT_3494 0.46 +0.3 157,930 - +1.8 157,970 + -4.0 157,973 + -0.7 157,973 + +1.7 157,974 - -0.0 157,976 + -0.6 158,016 + +0.2 158,016 + +0.2 158,017 - +0.2 158,017 - +1.7 158,017 - +1.0 158,018 + +0.0 158,018 + -0.6 158,018 + +0.1 158,018 + -1.8 158,018 + +0.9 158,018 + -0.1 158,019 - -0.6 158,019 - -0.2 158,019 - -0.9 158,095 - +0.7 158,118 + +0.6 158,119 - +0.9 158,122 - +0.1 158,125 + +0.6 158,126 - +0.5 158,131 + -0.3 158,323 - EX28DRAFT_3495 0.22 +0.3 158,371 + EX28DRAFT_3495 0.25 +0.6 158,371 + EX28DRAFT_3495 0.25 +0.4 158,371 + EX28DRAFT_3495 0.25 -0.2 158,371 + EX28DRAFT_3495 0.25 -0.4 158,371 + EX28DRAFT_3495 0.25 +0.8 158,371 + EX28DRAFT_3495 0.25 -0.2 158,371 + EX28DRAFT_3495 0.25 -0.9 158,371 + EX28DRAFT_3495 0.25 +0.3 158,371 + EX28DRAFT_3495 0.25 -0.7 158,372 - EX28DRAFT_3495 0.25 +0.7 158,392 + EX28DRAFT_3495 0.26 -1.6 158,392 + EX28DRAFT_3495 0.26 -0.9 158,552 - EX28DRAFT_3495 0.38 -0.7 158,569 + EX28DRAFT_3495 0.39 +1.0 158,575 - EX28DRAFT_3495 0.40 -0.2 158,575 - EX28DRAFT_3495 0.40 -0.1 158,628 + EX28DRAFT_3495 0.43 -1.0 158,779 - EX28DRAFT_3495 0.54 +0.2 158,907 + EX28DRAFT_3495 0.63 +0.2 158,908 - EX28DRAFT_3495 0.63 +0.7 158,908 - EX28DRAFT_3495 0.63 -0.7 158,985 + EX28DRAFT_3495 0.69 -0.9 159,073 + EX28DRAFT_3495 0.75 -0.6 159,073 + EX28DRAFT_3495 0.75 +0.5 159,288 + +0.0 159,300 + +1.3 159,416 - +3.4 159,424 + +0.3 159,712 - -0.3 159,716 - -0.6 159,771 + +0.2 159,775 - -0.0 159,826 - +0.3 159,846 + +0.3 159,984 - EX28DRAFT_3497 0.19 -0.2 160,044 - EX28DRAFT_3497 0.24 -0.7 160,055 - EX28DRAFT_3497 0.25 -0.6 160,111 - EX28DRAFT_3497 0.29 +0.2 160,241 - EX28DRAFT_3497 0.40 -0.8 160,364 + EX28DRAFT_3497 0.50 -0.5
Or see this region's nucleotide sequence