Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3485 and EX28DRAFT_3486 are separated by 146 nucleotides EX28DRAFT_3486 and EX28DRAFT_3487 are separated by 54 nucleotides EX28DRAFT_3487 and EX28DRAFT_3488 are separated by 90 nucleotides
EX28DRAFT_3485: EX28DRAFT_3485 - hypothetical protein, at 148,263 to 150,107
_3485
EX28DRAFT_3486: EX28DRAFT_3486 - hypothetical protein, at 150,254 to 150,382
_3486
EX28DRAFT_3487: EX28DRAFT_3487 - hypothetical protein, at 150,437 to 150,904
_3487
EX28DRAFT_3488: EX28DRAFT_3488 - Integrase, at 150,995 to 152,245
_3488
Position (kb) 150
151 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 149.328 kb on + strand, within EX28DRAFT_3485 at 149.328 kb on + strand, within EX28DRAFT_3485 at 149.363 kb on + strand, within EX28DRAFT_3485 at 149.364 kb on - strand, within EX28DRAFT_3485 at 149.419 kb on + strand, within EX28DRAFT_3485 at 149.420 kb on - strand, within EX28DRAFT_3485 at 149.437 kb on - strand, within EX28DRAFT_3485 at 149.453 kb on - strand, within EX28DRAFT_3485 at 149.462 kb on + strand, within EX28DRAFT_3485 at 149.522 kb on + strand, within EX28DRAFT_3485 at 149.576 kb on - strand, within EX28DRAFT_3485 at 149.576 kb on - strand, within EX28DRAFT_3485 at 149.591 kb on - strand, within EX28DRAFT_3485 at 149.725 kb on - strand, within EX28DRAFT_3485 at 149.738 kb on + strand, within EX28DRAFT_3485 at 149.868 kb on + strand, within EX28DRAFT_3485 at 149.869 kb on - strand, within EX28DRAFT_3485 at 149.869 kb on - strand, within EX28DRAFT_3485 at 149.869 kb on - strand, within EX28DRAFT_3485 at 149.869 kb on - strand, within EX28DRAFT_3485 at 149.932 kb on - strand at 149.933 kb on + strand at 149.933 kb on + strand at 149.934 kb on - strand at 149.980 kb on + strand at 149.980 kb on + strand at 149.981 kb on - strand at 149.984 kb on + strand at 149.985 kb on - strand at 150.016 kb on - strand at 150.032 kb on + strand at 150.033 kb on - strand at 150.115 kb on + strand at 150.153 kb on - strand at 150.162 kb on + strand at 150.162 kb on + strand at 150.197 kb on + strand at 150.202 kb on - strand at 150.216 kb on + strand at 150.226 kb on + strand at 150.260 kb on - strand at 150.472 kb on + strand at 150.472 kb on + strand at 150.473 kb on - strand at 150.473 kb on - strand at 150.473 kb on - strand at 150.473 kb on - strand at 150.478 kb on - strand at 150.512 kb on - strand, within EX28DRAFT_3487 at 150.649 kb on - strand, within EX28DRAFT_3487 at 150.769 kb on - strand, within EX28DRAFT_3487 at 150.770 kb on + strand, within EX28DRAFT_3487 at 150.956 kb on + strand at 150.997 kb on - strand at 151.023 kb on - strand at 151.035 kb on + strand at 151.074 kb on + strand at 151.075 kb on - strand at 151.115 kb on + strand at 151.115 kb on + strand at 151.116 kb on - strand at 151.285 kb on + strand, within EX28DRAFT_3488 at 151.331 kb on + strand, within EX28DRAFT_3488 at 151.332 kb on - strand, within EX28DRAFT_3488 at 151.332 kb on - strand, within EX28DRAFT_3488 at 151.344 kb on + strand, within EX28DRAFT_3488 at 151.344 kb on + strand, within EX28DRAFT_3488
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 149,328 + EX28DRAFT_3485 0.58 +2.8 149,328 + EX28DRAFT_3485 0.58 +0.2 149,363 + EX28DRAFT_3485 0.60 +0.0 149,364 - EX28DRAFT_3485 0.60 -0.0 149,419 + EX28DRAFT_3485 0.63 -0.1 149,420 - EX28DRAFT_3485 0.63 +1.3 149,437 - EX28DRAFT_3485 0.64 -1.0 149,453 - EX28DRAFT_3485 0.64 +0.3 149,462 + EX28DRAFT_3485 0.65 -1.7 149,522 + EX28DRAFT_3485 0.68 -0.5 149,576 - EX28DRAFT_3485 0.71 +0.4 149,576 - EX28DRAFT_3485 0.71 -0.5 149,591 - EX28DRAFT_3485 0.72 +0.6 149,725 - EX28DRAFT_3485 0.79 -1.3 149,738 + EX28DRAFT_3485 0.80 -1.2 149,868 + EX28DRAFT_3485 0.87 +0.4 149,869 - EX28DRAFT_3485 0.87 +0.4 149,869 - EX28DRAFT_3485 0.87 +0.8 149,869 - EX28DRAFT_3485 0.87 -0.4 149,869 - EX28DRAFT_3485 0.87 -0.0 149,932 - -0.3 149,933 + -3.8 149,933 + -1.0 149,934 - +0.4 149,980 + -0.9 149,980 + -0.4 149,981 - +1.7 149,984 + -0.4 149,985 - -0.5 150,016 - +0.4 150,032 + +0.1 150,033 - -1.1 150,115 + +0.5 150,153 - -1.0 150,162 + -3.6 150,162 + +0.2 150,197 + -0.1 150,202 - -0.7 150,216 + +0.3 150,226 + +0.9 150,260 - -0.2 150,472 + -0.8 150,472 + +0.9 150,473 - +0.6 150,473 - -0.2 150,473 - +0.3 150,473 - +0.8 150,478 - +2.1 150,512 - EX28DRAFT_3487 0.16 +1.3 150,649 - EX28DRAFT_3487 0.45 -1.5 150,769 - EX28DRAFT_3487 0.71 +0.7 150,770 + EX28DRAFT_3487 0.71 -1.6 150,956 + +1.3 150,997 - +0.2 151,023 - -1.2 151,035 + +0.6 151,074 + -0.7 151,075 - -0.8 151,115 + +0.4 151,115 + -1.5 151,116 - +0.5 151,285 + EX28DRAFT_3488 0.23 -0.9 151,331 + EX28DRAFT_3488 0.27 -1.4 151,332 - EX28DRAFT_3488 0.27 -1.4 151,332 - EX28DRAFT_3488 0.27 +0.4 151,344 + EX28DRAFT_3488 0.28 -0.7 151,344 + EX28DRAFT_3488 0.28 -0.2
Or see this region's nucleotide sequence